ID:

dsi_30362

 Coordinate:

2r:5815794-5815859 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATATCGGATGACATAGGTAATCGCTCCACACGCAAACTTTTAAATTGTTTTGCCATTAATCAAGTTTTTCGGCCATTATCAGAACTTATCTCGGACGACGCCAAGCCAGTAAAGAGGGATTTGTCCCCAGCA
**************************************************(((((.(((....((((((((.........)).))))..........)).....))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR902008
ovaries
...........................TGAGGTTATATCGGATGACATAGAAC................................................................................................................. 26 3 1 6.00 6 3 1 0 2 0 0 0 0 0
............................................................................................................................TAGGACGTCGCCAAGC.......................... 16 2 16 3.19 51 29 22 0 0 0 0 0 0 0
..........................TTGAGGTTATATCGGATGACATAGAAC................................................................................................................. 27 3 1 3.00 3 1 1 0 0 0 0 1 0 0
...........................................................................................................................CTCGGACGACGCCAAGCCA........................ 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0
......................................................................................................................................CCAAGCCAGTAAAGA................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................GTTGAGGTTATATCGGATGAC........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................ATCTCGGACGACGCCAAGCCAGTAAAG.................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................CATAGAACTTATCTCGGACGACGCCA............................. 26 3 1 1.00 1 0 0 0 0 0 0 0 0 1
..................................ATATCGGATGACATAGGGAATCGCTC.......................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................AACTTATCTCGGACGACGCCAAGC.......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................CGGATGACATAGGTAATCGC............................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.................................................................................................................CAGAACTTATCACGGACC................................... 18 2 6 0.33 2 0 0 0 0 2 0 0 0 0
...............................GTTATATCGTATACCATAGG................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
..............CCGCCCATATGGTTGAGG...................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................CTAGGACGTCGCCAAGC.......................... 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................GCCAAGCTAGTAAAGG................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................ATATCGGATGACATAGAAC................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
................................TGATATCGGATGACGT...................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................................................................................TCGGTCGCCGCCAAGCCT........................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ATGCGGAAGTTTCGGGCGGGTTTTCCAACTCCAATATAGCCTACTGTATCCATTAGCGAGGTGTGCGTTTGAAAATTTAACAAAACGGTAATTAGTTCAAAAAGCCGGTAATAGTCTTGAATAGAGCCTGCTGCGGTTCGGTCATTTCTCCCTAAACAGGGGTCGT
**************************************************(((((.(((....((((((((.........)).))))..........)).....))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
......................................................AGCGCTGGGTGCGTTTGAAAA........................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
....CGAAGTTTCGGGCTGGTT................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0
....AGAAGTTTCGGGCTGGT................................................................................................................................................. 17 2 7 0.14 1 1 0 0 0 0 0
..........................................................................................................................AGAGCCTGCTGCGTT............................. 15 1 7 0.14 1 1 0 0 0 0 0
..........................................ACTCTAACCAGTAGCGAGGT........................................................................................................ 20 3 7 0.14 1 0 0 1 0 0 0
.....................................................................................................................TGAATTGAGCCTGCT.................................. 15 1 7 0.14 1 0 0 0 0 1 0
................CGGGTATTCCAAGTCCAA.................................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0
....CGAAGTTTCGGGCTGGTTA............................................................................................................................................... 19 3 20 0.10 2 0 1 0 0 0 1
......AAGTTTCGGATGGGTTT............................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0
....GGAAGTTTCGGACTGGT................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 12:19 AM