ID:

dsi_30348

 Coordinate:

3r:10806495-10806644 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10806645_10806919_-]; five_prime_UTR [3r_10806645_10806919_-]; intron [3r_10801237_10806644_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATCGAGATTGGATCAACAAGATTAGCGCGCCACCTAGCGGTCGGATTGGGTGAGTTCTAATGGGATTTGTTTTCCCTAGTTTTTTGTAAAAAAAAAGCCCATTTATGGCATTGCAAAAATCCACTGAAAACTGAAAACAAGTGAAAAGTAACCGCCGTCCTTTCGACAGGCGGCGACGACATAAAATGTCAAACTGTCGATCAACATCAAGGCGAAATATGCAAGATGCGTGTCTTAAATGCAAAGAGG
**************************************************...((((.....((((.......))))..(((((((......)))))))(((....))).............((((..............))))....((..((((((((.....))).)))))..))(((((...))))).))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
....................................................................................................................................................................................................GTCGATCAACATCAA....................................... 15 0 1 1.00 1 1 0 0 0 0 0
.............................................................TGGGATTTGTAGTCCCTA........................................................................................................................................................................... 18 2 5 0.40 2 0 2 0 0 0 0
...................................................................................................................................................................................................GGTCGATCAACATCAA....................................... 16 1 4 0.25 1 1 0 0 0 0 0
.............................GCTACCTAGCGATAGGAT........................................................................................................................................................................................................... 18 3 20 0.15 3 1 0 1 1 0 0
...................................................................................................................................................................................................GGTCGATCAACATCAAGA..................................... 18 2 7 0.14 1 1 0 0 0 0 0
............................................................................................................................................................................................................................TGCTAGATGCGTCTCTT............. 17 2 8 0.13 1 0 1 0 0 0 0
..........................................................TAATGGGATTAGTTTTC............................................................................................................................................................................... 17 1 8 0.13 1 0 0 1 0 0 0
....................................................................................................................................TGAAAGCAAGTGACAAGTGA.................................................................................................. 20 3 16 0.06 1 0 0 1 0 0 0
..........................................................TAATGGGATTAGTTTTAGCT............................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................TCTAACCGCCGTCCT........................................................................................ 15 2 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................CAAGATGGGTGTCGTA............ 16 2 20 0.05 1 1 0 0 0 0 0
....................................AGCGGTCTGACTGGGTGGG................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TTAGCTCTAACCTAGTTGTTCTAATCGCGCGGTGGATCGCCAGCCTAACCCACTCAAGATTACCCTAAACAAAAGGGATCAAAAAACATTTTTTTTTCGGGTAAATACCGTAACGTTTTTAGGTGACTTTTGACTTTTGTTCACTTTTCATTGGCGGCAGGAAAGCTGTCCGCCGCTGCTGTATTTTACAGTTTGACAGCTAGTTGTAGTTCCGCTTTATACGTTCTACGCACAGAATTTACGTTTCTCC
**************************************************...((((.....((((.......))))..(((((((......)))))))(((....))).............((((..............))))....((..((((((((.....))).)))))..))(((((...))))).))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 M053
female body
...................................................................................................................TTTTTAGAAGACTTTTGACTTT................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................................GAAAGCTGTCCGCCGGT......................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................................................GGAAAGCGGTCCGCCGC.......................................................................... 17 1 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................................................................GGAAAGCTATCCGCC............................................................................ 15 1 10 0.30 3 1 0 2 0 0 0 0
....................................................................................................................................................................GCTGCCCGCCGCTGTTGTACT................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................AAAGCTGTCCGCCGGT......................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................GTATGACAGCTAGTAGTA.......................................... 18 2 5 0.20 1 0 0 0 1 0 0 0
................................................................................................................ACGTTTTTAGGGGATTTTTGAT.................................................................................................................... 22 3 5 0.20 1 0 0 1 0 0 0 0
.........................................ATCGGAACCCACTCAAGATT............................................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0
..................................................................................................................................................TTCATTGGCAGGAGGAA....................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................AGTTTGACAGGTAGTTTTA.......................................... 19 2 9 0.11 1 0 0 1 0 0 0 0
.......................................................................................ATTTTTTTTTAGGGTAA.................................................................................................................................................. 17 1 10 0.10 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................AGTTTGAGAGGTAGTTGT........................................... 18 2 11 0.09 1 0 0 1 0 0 0 0
TCAGGTCTAACCTAGTTG........................................................................................................................................................................................................................................ 18 2 12 0.08 1 0 0 0 1 0 0 0
.........ACCTAGTTGTTCTTA.................................................................................................................................................................................................................................. 15 1 13 0.08 1 0 0 0 1 0 0 0
....................................................CTCAAGACTACCCTA....................................................................................................................................................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0
...............................................................................................................................................................GGAAAGCGGTCCGCCGCG......................................................................... 18 2 14 0.07 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................CAGCTAGTCGTTGTTACGC................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
.................................................................................................................................................................AAAGCGGTCCGCCGC.......................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................TCTGGGCCGCTGCTGTAT.................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0
......................................................................................CATGAGTTTTTCGGGTAAA................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0
................................................................................AAAAAACATTTTTTTT.......................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0
.......................ATCGCGCGGTGGCTCCGC................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:49 AM