ID:

dsi_30342

Coordinate:

2r:5814148-5814297 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.6 -15.3 -15.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTGATATTTTTCAGCATAAAGCCGCACAAGACATACGCATGTGTACATATGTGCGAAAACGCGATATTTGCATATAGAGCGCGCTTGTGTGTGTGTTCGTGCGGACGCTTGGTGCTAAGTCCCGCTATTTGGACATAGACACCTTCCCAATTTTCCGAAATACATTTTCATTGTTCGCCATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAAT
*******************************************************************((((((...((((((((......)))))))))))))).............*************************************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
O001
Testis
SRR553486
Makindu_3 day-old ovaries
SRR902008
ovaries
SRR553485
Chicharo_3 day-old ovaries
SRR618934
dsim w501 ovaries
M023
head
SRR553487
NRT_0-2 hours eggs
M053
female body
M024
male body
O002
Head
GSM343915
embryo
.................................................................................................................................................................................................TCTTCAGGAATGTGAGCAAATGGTGCAGA............................ 29 0 1 5.00 5 0 0 2 1 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGATTCGTGTGGTCGAGCGGCA...... 22 3 1 3.00 3 0 0 0 0 0 0 0 3 0 0 0 0
...................................................................................................................................................................................................TCTAGGAATGTGAGCAAATGGTGCAGA............................ 27 2 1 3.00 3 0 0 0 2 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGAATGTGAGCAAATGGT................................. 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
...................................................................TTGCATATAGAGCGCGCTTGT.................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TAGTGGTCGAGCTGAAAAA... 19 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGAATGTGAGCAAATGGTG................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CGTGCGGACGCTTGGTGCTA..................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTCAGGAATGTGAGCAAATGGTGCA.............................. 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGAATGTGAGCAAATGGTGT............................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGAATGTGAGCAAATGGTG................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTCAGGAATGTGAGCAAATGGTG................................ 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGAATGTGAGCAAATGGTGCAGA............................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................TCGTGCGGACGCTTGGTGTAA..................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCGTGCGGACGCTTGGTGTT...................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGAATGTGAGCAAATGGTGA............................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCGCCATGCCATTTCCGTCTCT...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGAATGTGAGCAAATGGTGTT.............................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GATGCTTCGAGTGGTCG............. 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................AAGTCCCGCTATTAGGACCTG................................................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................TTTGCATATAGAGCGCGC...................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AATGTGAGCAAATGGTGCAGTT........................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GATGCTTCGAGTGGTCGAGCT......... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............AGCATAAAGCCGCACAAGACA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TATTTGGACATAGACACC........................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TAGGAATGTGAGCAAATGGTGCAGA............................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GTGTGTGTGTTCGTGCGGA................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TCGTGCGGACGCTTGGTTTTA..................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TCGTGCGGACGCTTGGTGTT...................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCAGGAATGTGAGCAAATGGTGCA.............................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGAATGTGAGCAAATGG.................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................GCGCTTGTGTGTGTGTTCGTG..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTGCAGATGCTTCGAGTGG................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ACGCTTGGTGCTAAGTCCCGT............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGAGTGGTCGAGCTGC....... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGAATGTGAGCAAATGG.................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTTGGACATAGACACCTTCCC...................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGTGTGTTCGTGCGGACGCTT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTGTGTGTGTTCGTGCGGAC................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGCGGACGCTTGGTGCTATTTT................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGCGGACGCTTGGTGCTATTA.................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCATTGTTCGCCATGCCATTTC............................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................CTTGTGTGTGTGTTCGTG..................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATGGTGCAGATGCTTCGAGTG................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GTGTGTGTTCGTGCGGACGCTT............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................AAGACATACGCATGTGTACA........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGCTAAGTCCCGCTATTT........................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GCAAATGGTGCAGATGCTTCGAGTG................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................TGTGTGTGTTCGTGCGGACGTT............................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCCCGCTATTTGGACATAGACACC........................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............CATAAAGCCGCACAAGACAT........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GTGTGTGTGTTCGTGCGGACG............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTCGGGAATGTGAGCAAATGGTGCAGA............................ 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................CGCTATTTGGACATAGACACCG.......................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TGGTGCAGATGCTTCGAGTGGTCGAGC.......... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................TGCAGATGCTTCGAGTGGTCGAGCTG........ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCAGATGCTTCGAGTGGTC.............. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................CCATGCCATTTCCGTCTCTTCAG.................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TGGTCGAGCTGAAAAAA.. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCGAGTGGTCGAGCTGCATT.... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GATTCGGGTGGTCGAGCGGCA...... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................CGCTTGTGTGTGTGTTCGTGT.................................................................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGATTCGTGTGGTCGAGCGG........ 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................TGCCAATTCCTTCTCTTCAGA................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGTTTGAGTGGTCTAGCTGC....... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TCTAGTGGTCGAGCT......... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GACTATAAAAAGTCGTATTTCGGCGTGTTCTGTATGCGTACACATGTATACACGCTTTTGCGCTATAAACGTATATCTCGCGCGAACACACACACAAGCACGCCTGCGAACCACGATTCAGGGCGATAAACCTGTATCTGTGGAAGGGTTAAAAGGCTTTATGTAAAAGTAACAAGCGGTACGGTAAAGGCAGAGAAGTCCTTACACTCGTTTACCACGTCTACGAAGCTCACCAGCTCGACGTTTTTTA
*************************************************************************************************************************************((((((...((((((((......)))))))))))))).............*******************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
O001
Testis
SRR618934
dsim w501 ovaries
M025
embryo
...........................................................................................................................................ATGGAAGGGTTAAAAGGCTTT.......................................................................................... 21 1 1 15.00 15 15 0 0 0
..........................................................................................................................................TATGGAAGGGTTAAAAGGCTT........................................................................................... 21 1 1 7.00 7 7 0 0 0
.........................................................................................................................................CTATGGAAGGGTTAAAAGGCT............................................................................................ 21 1 1 7.00 7 7 0 0 0
..........................................................................................................................................TATGGAAGGGTTAAAAGGCT............................................................................................ 20 1 1 5.00 5 5 0 0 0
.........................................................................................................................................CTATGGAAGGGTTAAAAGGCTT........................................................................................... 22 1 1 3.00 3 3 0 0 0
..................................................................................................................................................................................GTACGGTAAAGGCAGAGAAGT................................................... 21 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................................AAGCGGTACGGTAAAGGCAGA........................................................ 21 0 1 2.00 2 2 0 0 0
...................................................................................................................................................................................TACGGTAAAGGCAGAGAAGTC.................................................. 21 0 1 2.00 2 2 0 0 0
.................................................................................................................................................................................GGTACGGTAAAGGCAGAGA...................................................... 19 0 1 2.00 2 2 0 0 0
............................................................................TTTGCGCGAACACACACACAAGC....................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0
.............................................................................................................................................................................TAGCGGTACGGTAAAGGCAGAG....................................................... 22 1 1 1.00 1 1 0 0 0
...........................................................................................................................................ATGGAAGGGTTAAAAGGCTT........................................................................................... 20 1 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................CTTACACTCGTTTACCACGT.............................. 20 0 1 1.00 1 0 1 0 0
...............................................................................................................................................................................GCGGTACGGTAAAGGCAGAGA...................................................... 21 0 1 1.00 1 1 0 0 0
.........................................................................................................................................TTATGGAAGGGTTAAAAGGCT............................................................................................ 21 2 1 1.00 1 1 0 0 0
..........................................................................................................................................AATGGAAGGGTTAAAAGGCT............................................................................................ 20 2 1 1.00 1 1 0 0 0
..........................................................................................................................................TATGGAAGGGTTAAAAGGC............................................................................................. 19 1 1 1.00 1 1 0 0 0
.......................................................................TATATCTCGCGCGAACACACA.............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...........................................................................................................................................ATGGAAGGGTTAAAAGGCT............................................................................................ 19 1 1 1.00 1 1 0 0 0
..............GTATTTCGGCGTGTTCTGTA........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
..............................................................................CGCGCGAACACACACACAAGC....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................................TATGGAAGGGTTAAAAGGCTTT.......................................................................................... 22 1 1 1.00 1 1 0 0 0
............................................................................................................................................AGGAAGGGTTAAAAGGCTTTA......................................................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................................................................................................AATGGAAGGGTTAAAAGGCTT........................................................................................... 21 2 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................ACGTCTACGAAGCTCACCAGC............. 21 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................AGCGGTACGGTAAAGGCAGA........................................................ 20 0 1 1.00 1 1 0 0 0
...................................................................AACGTATATCTCGCGCGAACAC................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................CGTTTACCACGTCTACGAAGC..................... 21 0 1 1.00 1 0 1 0 0
...............................................................................................................................................................................GCGGTGCGGTAAAGGCAGAGA...................................................... 21 1 1 1.00 1 1 0 0 0
...............................................................................................................TACGATTCAGGGCGATAAACCT..................................................................................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................................................................................................AAGCGGTACGGTAAAGGCAG......................................................... 20 0 1 1.00 1 1 0 0 0
..............GTATTTCGGCGTGTTCTGTAT....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................TTCGGTACGGTAAAGGCAGA........................................................ 20 2 1 1.00 1 1 0 0 0
..........................................................................................................................................ATTGGAAGGGTTAAAAGGCTTT.......................................................................................... 22 2 1 1.00 1 1 0 0 0
.................................................................................................................................................................................TTTACGGTAAAGGCAGAGAAGT................................................... 22 2 1 1.00 1 1 0 0 0
.........................................................................................................................................TTTTGGAAGGGTTAAAAGGCTT........................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................................................................................................................TTAAAAGGCTTTATGTAAAA.................................................................................. 20 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................TTACGGTAAAGGCAGAGAAGTC.................................................. 22 1 1 1.00 1 1 0 0 0
......................................TACACATGTATACACGCTTTT............................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.........................................................................................................................................TTATGGAAGGGTTAAAAGGCTT........................................................................................... 22 2 1 1.00 1 1 0 0 0
..........................................................................................................................................TAAGGAAGGGTTAAAAGGCTT........................................................................................... 21 2 2 0.50 1 1 0 0 0
............................................................................................................................................................................ATTGCGGTACGGTAAAGGCAGA........................................................ 22 3 2 0.50 1 1 0 0 0
......................................................................................CACACACACAAGTACGCCT................................................................................................................................................. 19 1 4 0.25 1 0 0 0 1
................................................................................................................................................AGGGTTAAAAGGCTT........................................................................................... 15 0 4 0.25 1 0 0 1 0
.................................................................................................................................................................................................................................AAGCTCAGCAGCTCGA......... 16 1 5 0.20 1 0 0 1 0
.........................................................................................................................................AAATGGAAGGGTTAAAAGGCT............................................................................................ 21 3 7 0.14 1 1 0 0 0
.................................................ACACGCTTTTGCGCCCT........................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 12:16 AM