ID:

dsi_30335

 Coordinate:

2r:6990010-6990291 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.5 -30.3 -30.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
mature
  1. 2l:11470870-11470887 -
  2. dsi_30335  2r:6990093-6990110 -
  3. 2r:19929167-19929184 -
star

Sense Strand Reads

GAGACTGGCTTGGAATTTAAGAATATATCATCAATGTAAATTTGATCGAATTGGAAAACCGGAAAAGGGGCTGGGGGAAACTAGTGCAGAGTTTCCATTATGTAGACCACATAAACCCTCGTTTTATCCTTTTATGTTATGTATGAATGTCGTCTAAGTACAACAATAACAATAAACTACATCATCGACTATGACAACAGCCAACCCAACAACAACAATAACAACAACAGTACAAGCAACAACAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCTCAACCGCCGCAGCCGCACCACCACCAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACAGTCCC
**************************************************.........(((...((((((((..(((((((.......))))))).((((((.....))))))....................((((((((((((.(((.((......................)).)))))))..)).)))))).)))))...................................................................................................(((........)))..)))...)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
..............................................................................................................................................ACGAATGTCGTCGCAGTACAA........................................................................................................................................................................................................................... 21 3 5 0.80 4 4 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACAAGCAACAACAACAAC..................................................................................................................................... 18 0 3 0.67 2 0 2 0 0 0 0 0
....................................TAATTTTGATCGAAATGGAAGAC................................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CCGTCTGTTAGAGTGC................. 16 2 20 0.30 6 0 0 0 0 6 0 0
................................................................................................................................................TAATGTCGTCTAAGTATAAAAA........................................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 1 0
.........................................................................................................ACCACGAAAACCCTCGT.................................................................................................................................................................................................................................................................... 17 2 12 0.17 2 0 0 0 2 0 0 0
..................................................................................................................................................................................................................................................................................................................................................CTCCACCAGAGCCGTTTGTT........................ 20 3 10 0.10 1 0 0 0 1 0 0 0
.....................................................................................GCAGAGTTTTCAATATGTA...................................................................................................................................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 1 0 0 0
......................................ACTTTGATCGAATTG......................................................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0
............................................................................................TTCCATCATGTAGGCCTCA............................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................AGCACCACCTTGACA.................................................................................................................. 15 1 15 0.07 1 0 0 0 0 1 0 0
.............................................................................GCACTAGTGCAGAGTTT................................................................................................................................................................................................................................................................................................ 17 2 18 0.06 1 0 0 0 1 0 0 0
........................................TTTGATCCAATTGGA....................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TAGCACCACCTTGACAAAA............................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0
......................................ACTCTGATCGAATTGGA....................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CTCTGACCGAACCTTAAATTCTTATATAGTAGTTACATTTAAACTAGCTTAACCTTTTGGCCTTTTCCCCGACCCCCTTTGATCACGTCTCAAAGGTAATACATCTGGTGTATTTGGGAGCAAAATAGGAAAATACAATACATACTTACAGCAGATTCATGTTGTTATTGTTATTTGATGTAGTAGCTGATACTGTTGTCGGTTGGGTTGTTGTTGTTATTGTTGTTGTCATGTTCGTTGTTGTTGTTGTTAATCGTGGTGGAAGTGTAGTAGTTGTAATGATAGTCGTAGTTGTTGTTGTCGTTGTTATTTACGTTGGAGTTGGCGGCGTCGGCGTGGTGGTGGTCACGGCAGACAAACACACGCACACGGGGTGTCAGGG
**************************************************.........(((...((((((((..(((((((.......))))))).((((((.....))))))....................((((((((((((.(((.((......................)).)))))))..)).)))))).)))))...................................................................................................(((........)))..)))...)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................................................................................................................................................TGTCATGTTGGTTGTTGGTATT...................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................TCGGTAGGGTTGTTGTT....................................................................................................................................................................... 17 1 4 0.25 1 1 0 0 0 0 0 0
................................................................................................................................................................................................CAGTTGTCGGTCGAGTTGTTGT........................................................................................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................GTTATTGTTGTTGTTAAGCGTTGT.......................................................................................................................... 24 3 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GAGCTGGCGGCGTCG................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GTTTTTCTCATGTTGGTTGTTGT.......................................................................................................................................... 23 3 7 0.14 1 0 1 0 0 0 0 0
................................................................................................................CTTGGGAGCAAAATA............................................................................................................................................................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGTTATTGTTGTTGTCGTGT.................................................................................................................................................... 21 1 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................AGGAGCTGGCGGCGTCG................................................. 17 2 20 0.10 2 0 0 0 2 0 0 0
........................................................................................................................................................................................AACTGATACTGTTGT....................................................................................................................................................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0
...TGACAGAACCTTAAA............................................................................................................................................................................................................................................................................................................................................................................ 15 1 16 0.06 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................GTTGTTGTTATTGTTGTTGT......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................AATAGTTGTTGTTATCGTTGTTAT........................................................................ 24 3 20 0.05 1 0 1 0 0 0 0 0
.............................TAGGTACATTTAAACTAA............................................................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1
...............................................................................................................................................................................................................TTGATGTTGTTATAGTTGTTGT......................................................................................................................................................... 22 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6989960-6990341 - dsi_30335 GAGA---CTGGCTTG--------------G----AATTTAAGAATATAT---------------------CATCAATG-----T-----AAA--------------------------TTTGAT-CGAATTGG----------AAAACCGG-AAAAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAAACT----------------------A----GT-GCAG-AGTTTCCATT-------------------------------ATGTAGA-CCACAT------------AAAC-C----CTCGTTTTATCCTTTTATGTTATG----TATGAATGTCGTCTAAGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--ACAGCCAACCCAAC---------------------AAC------AACAAT---AACAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droSec2 scaffold_1:3828107-3828481 - GAGA---CTGGCTTG--------------G----AATTTAAGAA----TAAGAAAG--------------AATCAATG-----T-----AAA--------------------------TTTGAT-CTAATTGG----------AAAACCGG-AAAAGGGG-----------------------------------------------------------------GCTG--GGG-----------------------------------------------------------------------------------------------------------AG-AGTTTCCACT-------------------------------ATGTAGA-CCACAT------------AAAC-C----GTCGTTTTATCCTTTTATGTTATG----TGTGAATGTCGTCTAAGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--TCAGCCAACCCGAC---------------------AAC------AACAAT---AACAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
dm3 chr2R:6221268-6221631 - ATGA---TT-----------------------------CAAGAA----T---------------------CATCAATG-----T-----AAG--------------------------CTTGAT-CGACTTGG----------AAAAGCGG-AAGAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAAACT----------------------A----GT-GCAG-AGTTTCCATT-------------------------------ATGTAGA-CCACAT------------AAAC-C----CTAGTTTTATCCTTTTATGTTATG----TATGAATGTC---TAAGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--ACAGCCAACCCAAC---------------------AAC------AACAAT---AACAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droEre2 scaffold_4929:8153229-8153610 + GAGA---TTGGCTTG--------------G----AAG-------TAGAT---------------------CATTAATC-----T-----AAA--------------------------CTTGAT-CAAATCGG----------AAAACCGG-AAAAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAAACT----------------------A----GT-ACA----------CT-------------------------------ATGTAGC-CCACAT------------AAAT-C----CTCGTTTTATCGTTTAATGTTATG----AATGAATGTCGTC--AGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--ACAGCCAACGCAACAAAAACAAC---------------------AACAAT------------AATAACAACAACAGCTAC------AACAACAGTACAAGCAACA---------------ACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droYak3 2L:18846156-18846518 - ACTT---AA--------------------------------AAATGTAT---------------------CATTAATG-----T-----AAA--------------------------CTTGAT-CGAATTGG----------AAAATCAG-AAAGG-TG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAA-CT----------------------A----GT-GCAG-AGT---------------------------------------TGTAGA-AAACAT------------AAGCCC----CTTGTTTTATCGTTTAATGTTATG----TATGAATGTCGTCTAAGTACAACATTAAC-----AATAA----------------A--------------------------CTACTTCATC-GACTATGACA--ACAGCCAACCCAACAAAAACAAC---------------------AACAGTAACAACAACAACA------------------------------GTACAAGCAA------------------CAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTCCGTGTGCCCCACA-------GTCCC
droEug1 scf7180000409462:3665146-3665531 + GATA---ATAGATTTAACAC-------CAGA---ACTCT-------------------------------------TG-----C-----ACA--------------------------TTTGAT-TGAACTCG----------GAAA-TAGTAAACATGG-----------------------------------------------------------------GTTA-AGGG---------------------------------------------------------------------GAAACC----------------------T----CC-ACAA-AGTCTCCACA------------------------------CATGTAGT-CCACAT------------AAAC-A----CTCATTTGATCGTTAAATGTAATG----TATGAATGTCGCCTAAGTACAACAATATA-----AGTAA----------------A-C----------------------TACTACATCATC-AACTATGACA--ACAGCCAATCCAAC---------------------AAT------AA------CAACAACAACA------------------------------GTACAAGCAACAA---TAACAACAACAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droBia1 scf7180000301754:100531-100924 + ATAT---TTTATTTG--------------A----AGTCTTAAAA----T---------------------CA------------------TA--------------------------TTTGATTCGAATTCGATCAAAAAAAGAAAACAG-AAAAG-GG-----------------------------------------------------------------GCCGAAGGG---------------------------------------------------------------------GAAACC----------------------TA---TC-TCAT-AGTTTCCTCT-------------------------------GAACACA-CCACAT------------AAAC-A----CTAGTTTGATCGTTTAATGTTATG----TATGAATGTCGCCTAAGTACAACAATGAA-----AGTAA----------------A-------------------------ACTGCATCATC-AACTACGACA--ACAGCCAATCCAACAACAACAAC---------------------AACAGT---AACAACAACA------------------------------GTACAAGCAACAA---------CAACTACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCTCA-------GTCCC
droTak1 scf7180000415683:256806-257180 + GAGATGTTTTATTCA--------------G----AATTTTGAAA----TAAGATATAAAGGATTTTATATT----------GCT-----TAA--------------------------TTTGAT-CGAAATTG----------GAAA-TA---AAAGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-CCACAT------------AAAC-ATAGACTAGCTTGTTCCTTTAATGTTATG----TATGAATGTCGCCTAAGTACAACAATAATGTTTAAAAAA----------------A--------------------------ATACATCATC-AACTATGACA--ACAGCCAATCCAAC---------------------AAC------AACAATAACAACAGCAACA------------------------------GTACAAGCAACAA---------CAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCGGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droEle1 scf7180000491057:27541-27944 - AAGA---ATTGTTTTAAG-C-------CAAAATGA--------ATATAT-----ATAAAACAT---ATATTGTA-------GCT-----AAAAC------------------------TTTGAT-CGGATTTG----------GAAA-CAG-AGAGG-AG-----------------------------------------------------------------TGTA--AGG---------------------------------------------------------------------GAAATC----------------------G----CT-GCAG-GATTTCTATT-------------------------------GTGTAGTCCCACAT------------AAAC-A----CTCGTTTGATCGTTTTATGTAATG----TGTGAATGTCGCCTAAGTACAAGAATAAC-----AAACA----------------AAA----------------------AACTACATCATC-AACTATGACA--ACAGCAAATCCAAC---------------------AAT------AA------CAACAACAACA------------------------------GTACAAGCAACAA------CAACAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droRho1 scf7180000769355:16203-16589 + AAAA---C-----------------------------------------------------AT---ACATTGGTTATAATAGCTTTCTTAAGGCTTTATCAGCTATACATCCGCTACTTTTGAT-CAAATTCG----------AAAA-CAG-AAAGG-GG-----------------------------------------------------------------GTTA--AGG---------------------------------------------------------------------GAAAGC----------------------C----CT-GCAG-G----------------------------------------ATGTAGTCCCACGT------------AAAC-A----CTCGTTTGATCGTTTAATGTAATG----TGTGAATGTCGCCTAAGTACAACAATTAC-----AATCA----------------AAA----------------------AACTACATCATC-AACTATGACA--ACAGCAAATCCAAC---------------------AA------------------CAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCTACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCTGCACCACCAC---------------------------CAGTGCCGTCTGTCTGTGTGCGTGTGCCCCACA-------GTCCC
droFic1 scf7180000454066:1487266-1487700 + AACC---TTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG--GGGGATTAAATAAGATAATATTTATAACTGTTCATAATTGAAAGTTTATTATTGCCATATTGAATCGGCTTAGAAATCGGTGTAGGGCATAGGAAAAATCT----TT-AAAG-AGTTTTTACT-------------------------------CCGTAGT-ACACAT------------AAAC-A----CTTGTTTGATCGTTAAATGTAATG----TGTGAATGTCGCCTAAGTACAACAATAAC-----AAAAACCAAAAAAAAAAAATAA--------------------------CTGAATCATC-AACTATGACA--ACAGCAAATCCAAC---------------------AAT------AA------CAACAACAACA------------------------------GTACAAGCAACAATAACAACAACAACAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droKik1 scf7180000302817:558343-558777 - AGGA---CTC-------------------------------------------------------------------------------------------------------------------------------------------------AGGGCACTCAGGAGTCTTTCTTTAACAAATCCAAATACCATTCAGTTCAAAACTCTTAAATCGAAATCCGACTG--AAA---------------------------------------------------------------------GAAATTATTTTAGGGTG-----------A-CTCCTGACAGTAGCTT--------------------------------------------CCAAATAAAATTAAAAAAAAAC-A----CTTGCAATATTGTTTAAAGTAATGTTTGTGTGAATGTCT--TAAATACAA--ATAAC-----AAAA----------------------------------------------TCATCATCCAACTATGACAAAACAGCTATTCCAACAACTACAACAACTACTC---------------CAATAACAACAACAAC------------AACTCCAATTAAAACAACAATACAAGCAA------------------CAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACAT------TA----------------------------AA---------TGCAGCAGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droAna3 scaffold_13266:4685454-4685690 - AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAAC-----ATCCA----------------ACT----------------------ATATACGTCATC-AACTACAACA--ACAGCAGTTCCAAC---------------------AAC------AA------TATCTACAACA------------------------------ATACAACCAACAA---CTACAACAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACAT------CC----------------------------GC------------AGCAGCGGCCGCACCACCACCGC---------------------CGTCTGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCC
droBip1 scf7180000395751:493368-493602 - AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAAC-----ATCCA----------------ACT----------------------AA--ACGTCATC-AACTACAACA--ACAGCAGTACCAAC---------------------AAC------AA------CAGCAACAACA------------------------------ATACAAGCAACAG---CTACAACAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACAT------CC----------------------------GC------------AGCAGCGGCCGCACCACCACCAC---------------------AGTCTGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCT
dp5 3:7222511-7222879 + GAGA---GCTCTCTGGGG-CGGACACTCGGGGTGA--------ATGTGT---------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------G----CTGGCAG-AGCTTCCACCGTACAGCCACCCACACACACATTACCTATACAC---GC-CCACGT------------AAA-------CTCGTTTAATCGTCTAATGTTATG----TGTGAATGTAGCC--AATAAAACAATAAC-----CA-GA----------------A--------------------------CTACATCATC-GACTACAACA--AC---------------------------------------------------AGCAACAACA------------------------------GTACAAGCAACAA---------CAACAGCAACAATAAGCACTACTTTCACATCATCAACATTATTATCAGCATCTACTACAACAGCAACAATAAACGCTGGATCTGCCCCG----------------------------TA------------TGCAGCAGCAGGGGCAG------GGGCAGGCGCCTCCATTGCAC---CAGTGCCGTCTGTTTGTGTTCGTGTGCCCCATA-------GTCCC
droPer2 scaffold_2:7422281-7422504 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAAC-----CA-GA----------------A--------------------------CTACATCATC-GACT-TGACA--ACAG---------------------------------------------------CAACAACA------------------------------GTACAAGCAACAA---------CAACAGCAACAATAAGCACTACTTTCACATCATCAACATTATTATCAGCATCTACTACAACAGCAACAATAAACGCTGGATCTGCCCCG----------------------------TA------------TGCAGCAGCAGGGGCAG------GGGCAGGCGCCTCCATTGCAC---CAGTGCCGTCTGTTTGTGTTCGTGTGCCCCATA-------GTCCC
droWil2 scf2_1100000004590:1606752-1607016 + dwi_1792 GATG---AGGAACAGGCG-GAGGTTGGCGTAATAG--------ATCCAT---------------------CATTTATG-----C-----GAG--------------------------CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------CTATGTTCAACC--------------A----------------CCGATGCATCACCACATGCAAGATGATAGTGGGCTGC-AACTGCAACA--TCAACATCATCAAC---AACATC------AAC---ATC------AT------CAACAACATCA------------------------------GCTTCAACAA------------------CATCAGCATCAACAACATCAGCATCAACAACATCAGCATCAACAACATCAGCATCAACAACAACAACAACAGCTG------CA----------------------------AC------------TGCAGCAGCAGCAACAACAA---------------------------CAGC-----------------------------------------
droVir3 scaffold_12875:16130407-16130629 - TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATATCGTATAATG----TATG--TGT--------------------------------------------------------------------------------------------------AGCCAATACAACAACATCAACAACAATACAATCAAC------AACTAA---AACAACAACA------------------------------AC---AACAA------------AAACTACAACAATTAGCACGACTTTCACATCATCAACATTATTATCAGCATCAGCATCAACAACAACAACA---------G------CA----------------------------ACCGCTTTGAATCA---AGCGGCC---ATTGCAC---------------------------CAGTGCCGTCTGTTTGTGTTCGTGTGCCCCACA-------GTCCC
droMoj3 scaffold_6540:27478683-27478883 - ATGA---ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-----CAGCA----------------A-C----------------------AGCAACAGCAGC-AGCTGCAGCA--CCAGCAACACCAAC---------------------AGC------AGCAGC---AGCAACAGCA------------------------------GC---AACAA------------CAACAGCAACAACAACAGCAGCATCAACAACAACAACAGACACAGCAGCAACAGCAACAGCAACAACAACAGCTGCGACAG------AC----------------------------AC------------CGCCGC--CCACA--ACCAC---------------------------AA-C------A-----------ATGGCCA-T--GTCCACAG--CC
droGri2 scaffold_14830:2581255-2581487 - CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAT---------------------------------------------------------CAGCAAC-AACACCAACA--ACAGCAACACCAAC---------------------AGCAGCAGCAACAAC---AACAACAACA------------------------------ACACCTACAACAA------------CAGCAGCAACAACAGCAACACCAACAACAACAGCAACACTATCAACAACATGCACTACAACAACAACACCAACAACTG------CCTGGCAAAATCTCATATCGCGGCATTTTCAC------------CACCAC--------------------------------------AGGCAACAACAACAGCAACAACATGAGCGCCGCACA-------G---C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAGA---CTGGCTTG--------------G----AATTTAAGAATATAT---------------------CATCAATG-----T-----AAA--------------------------TTTGAT-CGAATTGG----------AAAACCGG-AAAAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAAACT----------------------A----GT-GCAG-AGTTTCCATT-------------------------------ATGTAGA-CCACAT------------AAAC-C----CTCGTTTTATCCTTTTATGTTATG----TATGAATGTCGTCTAAGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--ACAGCCAACCCAAC---------------------AAC------AACAAT---AACAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCAACAA------------CAACAAC.....................................................................................................................................................................................................................1830.67200002000000000000
droSec2
GAGA---CTGGCTTG--------------G----AATTTAAGAA----TAAGAAAG--------------AATCAATG-----T-----AAA--------------------------TTTGAT-CTAATTGG----------AAAACCGG-AAAAGGGG-----------------------------------------------------------------GCTG--GGG-----------------------------------------------------------------------------------------------------------AG-AGTTTCCACT-------------------------------ATGTAGA-CCACAT------------AAAC-C----GTCGTTTTATCCTTTTATGTTATG----TGTGAATGTCGTCTAAGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--TCAGCCAACCCGAC---------------------AAC------AACAAT---AACAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATGA---TT-----------------------------CAAGAA----T---------------------CATCAATG-----T-----AAG--------------------------CTTGAT-CGACTTGG----------AAAAGCGG-AAGAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAAACT----------------------A----GT-GCAG-AGTTTCCATT-------------------------------ATGTAGA-CCACAT------------AAAC-C----CTAGTTTTATCCTTTTATGTTATG----TATGAATGTC---TAAGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--ACAGCCAACCCAAC---------------------AAC------AACAAT---AACAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAC---------------------------CAGTGCCGTCTGTTTGTGTGC........................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCTGTTTGTGTGCGTGTGCCC................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCAGCCGCACCACCAC---------------------------C............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCGTCTGTTTGTGTGC........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......TT-----------------------------CAAGAA----T---------------------CATCAATG-----T-----A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................T-GCAG-AGTTTCCATT-------------------------------ATGTAGA-CCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACT----------------------A----GT-GCAG-AGTTTCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------AACAAT---AACAACAACA------------------------------GT...................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CGG-AAGAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAACAGCAAC............................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................G----------AAAAGCGG-AAGAG-GG-----------------------------------------------------------------GAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAGA---TTGGCTTG--------------G----AAG-------TAGAT---------------------CATTAATC-----T-----AAA--------------------------CTTGAT-CAAATCGG----------AAAACCGG-AAAAG-GG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAAACT----------------------A----GT-ACA----------CT-------------------------------ATGTAGC-CCACAT------------AAAT-C----CTCGTTTTATCGTTTAATGTTATG----AATGAATGTCGTC--AGTACAACAATAAC-----AATAA----------------A--------------------------CTACATCATC-GACTATGACA--ACAGCCAACGCAACAAAAACAAC---------------------AACAAT------------AATAACAACAACAGCTAC------AACAACAGTACAAGCAACA---------------ACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAACAAC---------------------AACAAT------------....................................................................................................................................................................................................................................................................................1920.5010001000
droYak3
ACTT---AA--------------------------------AAATGTAT---------------------CATTAATG-----T-----AAA--------------------------CTTGAT-CGAATTGG----------AAAATCAG-AAAGG-TG-----------------------------------------------------------------GCTG--GGG---------------------------------------------------------------------GAA-CT----------------------A----GT-GCAG-AGT---------------------------------------TGTAGA-AAACAT------------AAGCCC----CTTGTTTTATCGTTTAATGTTATG----TATGAATGTCGTCTAAGTACAACATTAAC-----AATAA----------------A--------------------------CTACTTCATC-GACTATGACA--ACAGCCAACCCAACAAAAACAAC---------------------AACAGTAACAACAACAACA------------------------------GTACAAGCAA------------------CAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTCCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAACAACAACAGCA..............................................................................................................................................................1930.33101000000000
droEug1
GATA---ATAGATTTAACAC-------CAGA---ACTCT-------------------------------------TG-----C-----ACA--------------------------TTTGAT-TGAACTCG----------GAAA-TAGTAAACATGG-----------------------------------------------------------------GTTA-AGGG---------------------------------------------------------------------GAAACC----------------------T----CC-ACAA-AGTCTCCACA------------------------------CATGTAGT-CCACAT------------AAAC-A----CTCATTTGATCGTTAAATGTAATG----TATGAATGTCGCCTAAGTACAACAATATA-----AGTAA----------------A-C----------------------TACTACATCATC-AACTATGACA--ACAGCCAATCCAAC---------------------AAT------AA------CAACAACAACA------------------------------GTACAAGCAACAA---TAACAACAACAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droBia1
ATAT---TTTATTTG--------------A----AGTCTTAAAA----T---------------------CA------------------TA--------------------------TTTGATTCGAATTCGATCAAAAAAAGAAAACAG-AAAAG-GG-----------------------------------------------------------------GCCGAAGGG---------------------------------------------------------------------GAAACC----------------------TA---TC-TCAT-AGTTTCCTCT-------------------------------GAACACA-CCACAT------------AAAC-A----CTAGTTTGATCGTTTAATGTTATG----TATGAATGTCGCCTAAGTACAACAATGAA-----AGTAA----------------A-------------------------ACTGCATCATC-AACTACGACA--ACAGCCAATCCAACAACAACAAC---------------------AACAGT---AACAACAACA------------------------------GTACAAGCAACAA---------CAACTACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCTCA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droTak1
GAGATGTTTTATTCA--------------G----AATTTTGAAA----TAAGATATAAAGGATTTTATATT----------GCT-----TAA--------------------------TTTGAT-CGAAATTG----------GAAA-TA---AAAGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-CCACAT------------AAAC-ATAGACTAGCTTGTTCCTTTAATGTTATG----TATGAATGTCGCCTAAGTACAACAATAATGTTTAAAAAA----------------A--------------------------ATACATCATC-AACTATGACA--ACAGCCAATCCAAC---------------------AAC------AACAATAACAACAGCAACA------------------------------GTACAAGCAACAA---------CAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCGGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droEle1
AAGA---ATTGTTTTAAG-C-------CAAAATGA--------ATATAT-----ATAAAACAT---ATATTGTA-------GCT-----AAAAC------------------------TTTGAT-CGGATTTG----------GAAA-CAG-AGAGG-AG-----------------------------------------------------------------TGTA--AGG---------------------------------------------------------------------GAAATC----------------------G----CT-GCAG-GATTTCTATT-------------------------------GTGTAGTCCCACAT------------AAAC-A----CTCGTTTGATCGTTTTATGTAATG----TGTGAATGTCGCCTAAGTACAAGAATAAC-----AAACA----------------AAA----------------------AACTACATCATC-AACTATGACA--ACAGCAAATCCAAC---------------------AAT------AA------CAACAACAACA------------------------------GTACAAGCAACAA------CAACAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droRho1
AAAA---C-----------------------------------------------------AT---ACATTGGTTATAATAGCTTTCTTAAGGCTTTATCAGCTATACATCCGCTACTTTTGAT-CAAATTCG----------AAAA-CAG-AAAGG-GG-----------------------------------------------------------------GTTA--AGG---------------------------------------------------------------------GAAAGC----------------------C----CT-GCAG-G----------------------------------------ATGTAGTCCCACGT------------AAAC-A----CTCGTTTGATCGTTTAATGTAATG----TGTGAATGTCGCCTAAGTACAACAATTAC-----AATCA----------------AAA----------------------AACTACATCATC-AACTATGACA--ACAGCAAATCCAAC---------------------AA------------------CAACAACA------------------------------GTACAAGCAACAA------------CAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCTACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCTGCACCACCAC---------------------------CAGTGCCGTCTGTCTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droFic1
AACC---TTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG--GGGGATTAAATAAGATAATATTTATAACTGTTCATAATTGAAAGTTTATTATTGCCATATTGAATCGGCTTAGAAATCGGTGTAGGGCATAGGAAAAATCT----TT-AAAG-AGTTTTTACT-------------------------------CCGTAGT-ACACAT------------AAAC-A----CTTGTTTGATCGTTAAATGTAATG----TGTGAATGTCGCCTAAGTACAACAATAAC-----AAAAACCAAAAAAAAAAAATAA--------------------------CTGAATCATC-AACTATGACA--ACAGCAAATCCAAC---------------------AAT------AA------CAACAACAACA------------------------------GTACAAGCAACAATAACAACAACAACAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCT------CA----------------------------AC------------CGCCGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droKik1
AGGA---CTC-------------------------------------------------------------------------------------------------------------------------------------------------AGGGCACTCAGGAGTCTTTCTTTAACAAATCCAAATACCATTCAGTTCAAAACTCTTAAATCGAAATCCGACTG--AAA---------------------------------------------------------------------GAAATTATTTTAGGGTG-----------A-CTCCTGACAGTAGCTT--------------------------------------------CCAAATAAAATTAAAAAAAAAC-A----CTTGCAATATTGTTTAAAGTAATGTTTGTGTGAATGTCT--TAAATACAA--ATAAC-----AAAA----------------------------------------------TCATCATCCAACTATGACAAAACAGCTATTCCAACAACTACAACAACTACTC---------------CAATAACAACAACAAC------------AACTCCAATTAAAACAACAATACAAGCAA------------------CAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACAT------TA----------------------------AA---------TGCAGCAGCAGCCGCACCACCAC---------------------------CAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotal
No Reads
droAna3
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAAC-----ATCCA----------------ACT----------------------ATATACGTCATC-AACTACAACA--ACAGCAGTTCCAAC---------------------AAC------AA------TATCTACAACA------------------------------ATACAACCAACAA---CTACAACAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACAT------CC----------------------------GC------------AGCAGCGGCCGCACCACCACCGC---------------------CGTCTGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTATCAGCATCAACAACAACAGC...............................................................................................................................................................2711.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAA---CTACAACAACAACA.......................................................................................................................................................................................................................2121.002110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CTACAACAACAACAACAA...................................................................................................................................................................................................................2270.141010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CTACAACAACAACAAC.....................................................................................................................................................................................................................20120.081010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAACAACAACAAT..................................................................................................................................................................................................................18130.081010000
droBip1
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAAC-----ATCCA----------------ACT----------------------AA--ACGTCATC-AACTACAACA--ACAGCAGTACCAAC---------------------AAC------AA------CAGCAACAACA------------------------------ATACAAGCAACAG---CTACAACAACAACAACAATTAGCACAACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACAT------CC----------------------------GC------------AGCAGCGGCCGCACCACCACCAC---------------------AGTCTGTGCCGTCTGTTTGTGTGCGTGTGCCCCACA-------GTCCTSizeHit CountTotal NormTotal
No Reads
dp5
GAGA---GCTCTCTGGGG-CGGACACTCGGGGTGA--------ATGTGT---------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------G----CTGGCAG-AGCTTCCACCGTACAGCCACCCACACACACATTACCTATACAC---GC-CCACGT------------AAA-------CTCGTTTAATCGTCTAATGTTATG----TGTGAATGTAGCC--AATAAAACAATAAC-----CA-GA----------------A--------------------------CTACATCATC-GACTACAACA--AC---------------------------------------------------AGCAACAACA------------------------------GTACAAGCAACAA---------CAACAGCAACAATAAGCACTACTTTCACATCATCAACATTATTATCAGCATCTACTACAACAGCAACAATAAACGCTGGATCTGCCCCG----------------------------TA------------TGCAGCAGCAGGGGCAG------GGGCAGGCGCCTCCATTGCAC---CAGTGCCGTCTGTTTGTGTTCGTGTGCCCCATA-------GTCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---CAGTGCCGTCTGTTTG.............................1711.0010000000100
droPer2
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAAC-----CA-GA----------------A--------------------------CTACATCATC-GACT-TGACA--ACAG---------------------------------------------------CAACAACA------------------------------GTACAAGCAACAA---------CAACAGCAACAATAAGCACTACTTTCACATCATCAACATTATTATCAGCATCTACTACAACAGCAACAATAAACGCTGGATCTGCCCCG----------------------------TA------------TGCAGCAGCAGGGGCAG------GGGCAGGCGCCTCCATTGCAC---CAGTGCCGTCTGTTTGTGTTCGTGTGCCCCATA-------GTCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GATG---AGGAACAGGCG-GAGGTTGGCGTAATAG--------ATCCAT---------------------CATTTATG-----C-----GAG--------------------------CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------CTATGTTCAACC--------------A----------------CCGATGCATCACCACATGCAAGATGATAGTGGGCTGC-AACTGCAACA--TCAACATCATCAAC---AACATC------AAC---ATC------AT------CAACAACATCA------------------------------GCTTCAACAA------------------CATCAGCATCAACAACATCAGCATCAACAACATCAGCATCAACAACATCAGCATCAACAACAACAACAACAGCTG------CA----------------------------AC------------TGCAGCAGCAGCAACAACAA---------------------------CAGC-----------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...G---AGGAACAGGCG-GAGGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGTGGGCTGC-AACTGCAA......................................................................................................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATGCAAGATGATAGTGGG...................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACC--------------A----------------CCGATGCATCACCA......................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATAGTGGGCTGC-A.............................................................................................................................................................................................................................................................................................................................................................1811.00100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACATCAGCATCAACAAC............................................................................................................................................................2080.25200011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACATCAGCATCAACAAC...........................................................................................................................................................................2080.25200011
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACATCAGCATCAACAAC..........................................................................................................................................................................................2080.25200011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------------------CATCAGCATCAACAAC.........................................................................................................................................................................................................2080.25200011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGCATCAACAAC............................................................................................................................................................19100.10100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGCATCAACAAC...........................................................................................................................................................................19100.10100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAGCATCAACAAC..........................................................................................................................................................................................19100.10100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------CATCAGCATCAACAAC.........................................................................................................................................................................................................19100.10100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAACAACAACAACAGC................................................................................................................................................22200.10202000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCTG------CA----------------------------AC------------............................................................................................18130.08100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCTG------C.......................................................................................................................................18200.05110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAA---------------------------CAGC-----------------------------------------20200.05100010
droVir3
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATATCGTATAATG----TATG--TGT--------------------------------------------------------------------------------------------------AGCCAATACAACAACATCAACAACAATACAATCAAC------AACTAA---AACAACAACA------------------------------AC---AACAA------------AAACTACAACAATTAGCACGACTTTCACATCATCAACATTATTATCAGCATCAGCATCAACAACAACAACA---------G------CA----------------------------ACCGCTTTGAATCA---AGCGGCC---ATTGCAC---------------------------CAGTGCCGTCTGTTTGTGTTCGTGTGCCCCACA-------GTCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAACAACA---------G------CA----------------------------AC........................................................................................................21190.051000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAACAACA---------G------CA----------------------------A.........................................................................................................20200.051000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAACAACAACA---------G------C.......................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AACAACAACA------------------------------AC---AACAA------------AAAC...........................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAA---AACAACAACA------------------------------AC---A...............................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATGA---ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-----CAGCA----------------A-C----------------------AGCAACAGCAGC-AGCTGCAGCA--CCAGCAACACCAAC---------------------AGC------AGCAGC---AGCAACAGCA------------------------------GC---AACAA------------CAACAGCAACAACAACAGCAGCATCAACAACAACAACAGACACAGCAGCAACAGCAACAGCAACAACAACAGCTGCGACAG------AC----------------------------AC------------CGCCGC--CCACA--ACCAC---------------------------AA-C------A-----------ATGGCCA-T--GTCCACAG--CCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGACACAGCAGC..............................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCATCAACAAC................................................................................................................................................................................................2220.501000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCATCAACA..................................................................................................................................................................................................1970.141000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCA------------------------------GC---AACAA------------CAACA..........................................................................................................................................................................................................................25200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAAC---------------------AGC------AGCAGC---AG...........................................................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAGCAG..........................................................................................................................................................................................................19200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA------------------------------GC---AACAA------------CAACAGC........................................................................................................................................................................................................................24200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------CAACAGCAACAACAACA..............................................................................................................................................................................................................20200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------------------------------GC---AACAA------------CAAC...........................................................................................................................................................................................................................19200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----------------A-C----------------------AGCAACAGCAGC-A.............................................................................................................................................................................................................................................................................................................................................................19200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCA------------------------------GC---AACAA------------CAACAGCA.......................................................................................................................................................................................................................28200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCTGC...................................................................................................................................................19200.051000010
droGri2
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAT---------------------------------------------------------CAGCAAC-AACACCAACA--ACAGCAACACCAAC---------------------AGCAGCAGCAACAAC---AACAACAACA------------------------------ACACCTACAACAA------------CAGCAGCAACAACAGCAACACCAACAACAACAGCAACACTATCAACAACATGCACTACAACAACAACACCAACAACTG------CCTGGCAAAATCTCATATCGCGGCATTTTCAC------------CACCAC--------------------------------------AGGCAACAACAACAGCAACAACATGAGCGCCGCACA-------G---CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAACAACAGCAACA......................................................................................................................................................................................21200.05101

Generated: 05/19/2015 at 05:43 AM