ID:

dsi_30319

 Coordinate:

3r:4654002-4654071 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.4 -22.3 -22.3

Flybase annnotation

exon [3r_4653722_4654001_+]; CDS [3r_4653722_4654001_+]; CDS [3r_4654072_4654432_+]; exon [3r_4654072_4654432_+]; intron [3r_4654002_4654071_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------##################################################
GGCATCCGAGTGGGCGAGCTGCTCGGCGACTTCAATTTGTTCAGCGAAAAGTGAGAGGAGTTTTGGCCGGGGGAATTAGGGGAACCTAGATTCTAACCGCCCTCTTTGACACCCACCTAGGTTCAAGTCGATTGTGGCCACGCACGTGCGCCTGTTCCCATCGATTAACG
**************************************************(((.((((((....(((.((.(((((((((....))).))))))..)))))))))))..)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................GATTGTGGCCACGCACGTGCGCCTGT............... 26 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0
........................................................................................................................GTTCAAGTCGATTGTGGCCACG............................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................TTAGGGGAACCTAGATTCTAACCGCC..................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGTTCAAGTCGATTGTGGCC............................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................GTTCAAGTCGATTGTGGCCA.............................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............GGCGAGCTGCTCGGCGACTT.......................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................TGCTCGGCGACTTCAATTTGTTC................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................CACGTGCGCCTGTTCCCATC........ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................GTTCAAGTCGATTGTGGCC............................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTCAAGTCGATTGTGGCCACG............................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................CTTCAATTTGTTCAGCGAA.......................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................GATTGTGGCCACGCACGTG...................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................GAAAATTGAGAGGAGTT............................................................................................................ 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................AAGTTCAAGTCGATTGTG.................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................TTCAGCGAAAAGTGAGAGGAGTTT........................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................GACACCCACCTAGGTTCAAGTCGAT...................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................GCACCCAGCTAGGTTCAAAT.......................................... 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..........................................CGGGAAAAGTGAGAGGGGTTTT.......................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................CCTAGGTTCAAGGCGA....................................... 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
...........................................TCGAAATTTGAGAGGAGTT............................................................................................................ 19 3 20 0.20 4 0 0 0 4 0 0 0 0 0 0
............................................CGAAATTTGAGAGGAGTT............................................................................................................ 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.................................AATTTGTTCAGCGAAT......................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 0 0 1 0
.............................................GAAATTTGAGAGGAGTT............................................................................................................ 17 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..................................................................CCGGGGGAAGTATGGG........................................................................................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0
.............CCGAGCTGCTGGGCGACT........................................................................................................................................... 18 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0
.................................................AGTGAGAAGGGTTTCGGCC...................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................AGTTTTGACCGGTGGA................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...........................................................GTTTTTGACGGAGGAATTA............................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGTAGGCTCACCCGCTCGACGAGCCGCTGAAGTTAAACAAGTCGCTTTTCACTCTCCTCAAAACCGGCCCCCTTAATCCCCTTGGATCTAAGATTGGCGGGAGAAACTGTGGGTGGATCCAAGTTCAGCTAACACCGGTGCGTGCACGCGGACAAGGGTAGCTAATTGC
**************************************************(((.((((((....(((.((.(((((((((....))).))))))..)))))))))))..)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
.............................GAAGTTAAACAAGTCGCTTTTCAAG.................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0
..............................................................................CCCCTTGGACCTAAGCTTG......................................................................... 19 2 1 1.00 1 1 0 0 0 0
................................................TGCTCTCTCCTCAATACCG....................................................................................................... 19 3 18 0.83 15 8 0 5 2 0
..........................................................................TGATCCCCTTAGATCTAA.............................................................................. 18 2 3 0.33 1 0 0 1 0 0
..................................................CTCTCTCCTCAATACCGGAC.................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
......................................................................................................................................................GGACAAGGGTAGCTGATGC. 19 3 10 0.10 1 0 0 0 1 0
.....................................................................................................................................................GGGACAAGGGTAGCTGATG.. 19 3 13 0.08 1 0 0 0 1 0
..................................................CTCTCTCCTCAATACCG....................................................................................................... 17 2 14 0.07 1 1 0 0 0 0
.......................GCCCATGAAGCTAAACAAGT............................................................................................................................... 20 3 14 0.07 1 0 0 0 0 1
...................................................TCTCTCCTCAATACCG....................................................................................................... 16 2 20 0.05 1 1 0 0 0 0
......................................................CTCCTCAATACCGGAC.................................................................................................... 16 2 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 10:20 AM