ID:

dsi_30311

 Coordinate:

3r:10791755-10791892 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.4 -36.2 -36.0

Flybase annnotation

exon [3r_10791573_10791754_-]; CDS [3r_10791573_10791754_-]; CDS [3r_10791893_10792131_-]; exon [3r_10791893_10792131_-]; intron [3r_10791755_10791892_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTAGGAAGTCCGCGGGGCAGCTTCAATTCCCTCGCCGGCTATCCGCAAGTGAGTAGCGATTTAATGGAGCATATTGCGATCCGATTTCGGAATACTGATTCTGATTTATCTGCTGGATCTGCCACTTCCTGTGGATTCGAGTGGGCCCTTCTAATGTGCCGCCCTCTTCCGTTTTGCGTTTTTCAGCACGCGATTGAACTGCAGACGATGAACATGTACCGCCAGCGATCTGCGAA
**************************************************.((((.((((....(((((((((...)))((((((((.(((((((....)))))))...)))....)))))..((((.....)))).....((.((((..............)))).))))))))...)))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................ACGCGATTGAACTGCAGACGATG.......................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................TTCCTGTGGATTCGAGTGGGCCCT....................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................CGCGATTGAACTGCAGACGATGAA........................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................TGCGATCCGAGTTCGGAAT............................................................................................................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0
............................................................................TGCGATCCGAGTTCG................................................................................................................................................... 15 1 19 0.26 5 0 0 0 5 0 0 0 0
...........................................................................................................TTATCTGCTGGAATTGCCACCT............................................................................................................. 22 3 6 0.17 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTAACGCCAGCGATCTACA.. 20 3 7 0.14 1 0 0 0 0 0 1 0 0
............................................................................................................TATCTGCTGGAATTGCCAC............................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 1 0
...................................GCCCTCTATCCTCAAGTGA........................................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 0 1 0 0 0
.............................................................................................................AACTGCTGGATCTGTCA................................................................................................................ 17 2 18 0.06 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GAACAAGTAGCGCGAGCGA........ 19 3 19 0.05 1 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................CGATGAACATGAACCC............... 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTAATCCTTCAGGCGCCCCGTCGAAGTTAAGGGAGCGGCCGATAGGCGTTCACTCATCGCTAAATTACCTCGTATAACGCTAGGCTAAAGCCTTATGACTAAGACTAAATAGACGACCTAGACGGTGAAGGACACCTAAGCTCACCCGGGAAGATTACACGGCGGGAGAAGGCAAAACGCAAAAAGTCGTGCGCTAACTTGACGTCTGCTACTTGTACATGGCGGTCGCTAGACGCTT
**************************************************.((((.((((....(((((((((...)))((((((((.(((((((....)))))))...)))....)))))..((((.....)))).....((.((((..............)))).))))))))...)))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body
.................................................................................................................................................................................................CTGACTTGACGTCTCCT............................ 17 2 20 0.20 4 4 0
.......................................................................................................................AGACGGTTAAGTACACCAAAG.................................................................................................. 21 3 6 0.17 1 1 0
.................CCGTAGAAGTTTAGGGAG........................................................................................................................................................................................................... 18 2 7 0.14 1 0 1
.......................CAGTTAAGGGAGAGGCC...................................................................................................................................................................................................... 17 2 9 0.11 1 1 0
...............................GGAGCGGCCTATAGGG............................................................................................................................................................................................... 16 2 20 0.10 2 2 0
.................CCTTAGAAGTTAAGGGAGT.......................................................................................................................................................................................................... 19 3 16 0.06 1 1 0

Generated: 04/24/2015 at 10:49 AM