ID:

dsi_30299

 Coordinate:

3r:11055690-11055814 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.9 -12.8 -12.7

Flybase annnotation

CDS [3r_11055406_11055651_-]; five_prime_UTR [3r_11055652_11055689_-]; exon [3r_11055815_11055964_-]; five_prime_UTR [3r_11055815_11055964_-]; exon [3r_11055204_11055689_-]; intron [3r_11055690_11055814_-]

No Repeatable elements found

mature
star
  1. 2l:6253-6267 -
  2. 2l:15462595-15462609 +
  3. dsi_30299  3r:11055758-11055772 -
  4. 4:222530-222544 +

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------##################################################
GCTGTTTTAAGGTTATACTGCGCTGCCGTTGCAATCGCTCCACCAATTTGGTAATTTTGCTTATTTAACACCAAATATTGCATAAAACTAGGAAAACGAAGAATCTGTAAAGTGGAGAGGGACAGGGAACGCTATTAACAAAGTTGGATAACTAAAGTACATCCTCTTCTTGCAGTTCACGGTCGGACAATTACATAACTTGAAGAAGAAACCATGTCGCAGGCT
********************************************************************************************............((((((...((((((((...........(((((((...))).))))...........))))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O001
Testis
........................................................................................................................................................................................GGACAATTACATAACTTGAAGAA.................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGGACAATTACATAACTTGAAGAAGA................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CAGTTCACGGTCGGACAATTG................................ 21 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
....TTTTAAGGTTATACTGCGC.......................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2
................................................................................................................................................................................TCACGGTCGGACAATTACATAACT......................... 24 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................AATTTGCAGTTCACGGTCGGAC..................................... 22 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................TCACGGTCGGACAATTACATAAC.......................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CAGTTCACGGTCGGACAATTA................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CACGGTCGGACAATTACATAACT......................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGTTCACGGTCGGACAATTACATAACT......................... 27 1 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0 0
........................................................................................................................................................................................................TGAAGAAGAAACCATGTCGCAGGCT 25 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................ATTACATAACTTGAAGAAGA................ 20 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGGACAATTACATAACTTGAAGAAGAA............... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...........GTTATACTGCGCTGCCGTT................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...........GTTATACTGCGCTGCCGTTGC................................................................................................................................................................................................. 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0
.............TATACTGCGCTGCCGTTGCA................................................................................................................................................................................................ 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.........................CCGTTGCAATCGCTCC........................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................TCACGGTCGGACAATTACATAA........................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................GAAGAAACCATGTCGCAGGCT 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................AGAAGAAACCATGTCGCAGGC. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GGACAATTACATAACTTGAAAA................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................TCACGGTCGGACAATTACATAACTTGAA..................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........GGTTATACTGCGCTGCCGTTGC................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTCGGACAATTACATAACTTGAAGAAGA................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................GCTGCCGTTGCAATCGCT.......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........AAGGTTATACTGCGCTGCCGTTGC................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCGGACAATTACATAACTTGA...................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................TTGAAGAAGAAACCATGTCGCAGGC. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CACGGTCGGACAATTACAT............................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGTTCACGGTCGGACAATTACATAAC.......................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................GTAAAGTGGAGAGGGACAA.................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGAAACCATGTCGCAGAC. 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGAAGCCATGTCGCAGGC. 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
GCTGTTTTAAGGTTATACTGCGCT......................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....TTTAAGGTTATACTGCGCTGCCGTTGC................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTTCACGGTCGGACAATTACATAACT......................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................AACCATGTCGCAGGC. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................CTGCGCTGCCGTTGCAAG.............................................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................CACGGTCGGACAATTACATAACTTGAA..................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......AAAGGTTATACTGCGCTGCCGTTG.................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCTGTAAAGTGGAGAGGGGCAGGG.................................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTGTTCACGGTCGGACAAT.................................. 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGAAACCATGTCGCAGGCT 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................TTTGTTCACGGTCGGACAATT................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................GCCGTTGCAATCGCGCCACCA.................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................GCTGCCGTTGCAATCGCTC......................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTAAAGTACACCCTCTTCTTGCAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTAAAGTACATCCTCTTCTTGCAG.................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTGGAAGAAGAAACC............ 16 1 4 0.50 2 0 0 0 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................................................................TAAGATGAATCCATGTCGCAG... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................AAAACGAAGAATCTG...................................................................................................................... 15 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TTAACAATGTTGGATCACT........................................................................ 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................ATTTTGCTATTTTAAGACCAAA...................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................GGGGACGGACTGGGAACGC............................................................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................AGTTCACAGTCCGACGATT................................. 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................ATACGATGAATCTGTCAAG................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................AAAATGAAGAATCTG...................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................GCAGAAACGATGTCGCA.... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CGACAAAATTCCAATATGACGCGACGGCAACGTTAGCGAGGTGGTTAAACCATTAAAACGAATAAATTGTGGTTTATAACGTATTTTGATCCTTTTGCTTCTTAGACATTTCACCTCTCCCTGTCCCTTGCGATAATTGTTTCAACCTATTGATTTCATGTAGGAGAAGAACGTCAAGTGCCAGCCTGTTAATGTATTGAACTTCTTCTTTGGTACAGCGTCCGA
**************************************************............((((((...((((((((...........(((((((...))).))))...........))))))))))))))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body
............................................................................................................................CCCTTGCGATAATTGTTTCAAC............................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............ATATGACGCGACGGCAACG................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................CGACGGCAACGTTAGTCAGGT....................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................ATCCTTTTGCTCCTTAGACAT.................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................AACGTTAGCGAGGTGGTTAAA................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........TCCAATATGACGCGACGGCAA................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TTGTTTCGACCTATTGGTTTCT................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TCAAGTGACAGCCAGCTAATG............................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................TTGTTTCAGCCTATAGGTTTCA................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
................................................................................GTATTCTGATCCTTTGGTTTCT........................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................CAACCTATTGACTTCATTTG............................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
................................................................AAGTGTGGTTCATAGCGTA.............................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0
......................GACGGCACCATTAGCGGGG........................................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................GAGAAGATCGTCAGGTG............................................. 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................GCAAGTGCCACCCTG..................................... 15 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................TGGAGCAGGACGTCAAGTG............................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................TAAAGTGTTGAACTTCTT.................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................TGTCTCTTGCGGTAAT........................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................................................AAGTGTGGTTTATAGCG................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11055640-11055864 - dsi_30299 GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCA-AATATTGC-AT------------------A-AAAC---TAGGAA--------AACGAAGAAT-----CTGTAAA----------------------GTGGA-GAG--GG-AC-AG-G-GAACG----------------------CTA-TTAAC---------AAAGTTGGATAACTAAAGTACATCCTCTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCT
droSec2 scaffold_0:11887127-11887351 - GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCA-AAAATTGC-AT------------------A-AAAC---TAGGAA--------AACGAAGAAT-----CTGTAAA----------------------GTGCA-GAG--GG-AC-AG-G-GAACG----------------------GTA-TTAAC---------AAAGTTTGATAACTAAAGTGAACCCTTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCT
dm3 chr3R:10152800-10153024 + GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACATCA-AATATTGC-AT------------------A-AAAC---TAGGAA--------AACCAGGAAT-----CTGTAAA----------------------GTGGA-GCG--AG-AC-GG-G-GAACG----------------------CTA-TTAAG---------GAAGTCGGATAACTAAAGTACATCCTTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCT
droEre2 scaffold_4770:9686191-9686417 + GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCG-AAAATTGC-AT------------------A-AAAT---TAGGAG--------CTCAAGGAGT-----CTGTAAA----------------------GTGGA-GAG--CGCGC-AG-G-GAACG--------------------CAGTCT-T-AC---------CAAGAAGCATTACTAAATTGCAATCCTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCT
droYak3 3R:16293980-16294206 - GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCG-AAAATTGC-AT------------------A-AAAT---TCGCAA--------CTCAAGGAAT-----CTGTAAA----------------------GTGGA-GGG--CGTGC-AG-G-GAACG--------------------CAGTCGTTAA-----------AAGTAGCATTACTAAATGACACCCTTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCT
droEug1 scf7180000409584:366733-366953 - GCTGTTTTAAGGTTATAC-TG------CCGT--------TGCAATCGCTTCGCCAATTC--GGTAATTTT-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAC---CCAAAT--------AAAAAGGGAA-----CTATTAA----------------------GCGAA-GGA--TGTAT-AG-GGAAA----------------------CCGTTT-A-AC---------CGTGTTCGATAACTAAACTACTTTTTTCTCTTGCAGTT--CTCGGTTGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCTCAGGCT
droBia1 scf7180000302075:5489374-5489600 + GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT-GGGTAATTTT-GC--TTATTTAACACCA-AAAGTTGC-AA------------------A-AAAG---CTTAAG--------GACAATAGAT-----CTGTGAA----------------------GTACA-GGG--TGGAC-AG-GGGTG----------------------CCCCT-TTAAC---------CTTATTGGATTACTAAAGTTCACCCTTTTCTTGCAGTT--CACGGTCGGAC--ATTACATAACTCGAAGAAGA-AACCATGTCGCAGGCT
droTak1 scf7180000415396:98591-98817 + GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT-GGGTAATTTC-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAA---CAAGAG--------GACAAGGGAT-----CTGTATA----------------------GTGGA-GGG--CCTAC-TG-GGCGG----------------------CCGTTT-CAAC---------G-ATTGAGATTACTAAAAGATAGTCTTTTCTTGCAGTT--CACGGACGGAC-AATTACATAACTCGAAGAAGA-AACCATGTCGCAGGCT
droEle1 scf7180000491047:994563-994789 - GCTGATTTAAGGTTATAC-TG---CTGCCGT--------TGCAATCGTTCCACCAATTT-GGGTAATTTC-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAA---TAAAGG--------AAGAAGGGTT---TTCTGCAGT----------------------GCAGA-GGG--AGTAC-TG-GGGAA----------------------CCTCGG-A-AG---------TAAGATGTATAACTGATAGTCCCCAATTTCTTGCAGTT--CCCGGTCGGAA-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCT
droRho1 scf7180000770426:12113-12337 - GCTGTTTTAAGGTTATAC-TG---CTGCCAC--------TGCAATCGCTCTACCAATTT-GGGTAAATTC-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAG---CAAAGG--------AAGAAGGGTT-----CTGCAAT----------------------GTATA-GGG--AGTGC-AG-GAGAA----------------------CCCCAA-A-TG---------TAAGATGTATAACTGATATACCCAAATTTCTTGCAGTT--CCCGGTCGGAC-AATTACATAACTCGAAGAAGA-AACCATGTCGCAGGCT
droFic1 scf7180000453912:640944-641170 + GCTGTTTTAAGGTTATAC-TG-CGCTACCGT--------TGCAATCGCTCCACCAATTT-GGGTAATTTT-GC--TTACTTAATACAA-AAAATTGC-AT------------------A-AAAG---CAAAGG--AA----TATA---AAG-----CTGTGAA----------------------GTGGA-GGA--CGTTCCCA-GGAAA----------------------TCTCTA-A-GC---------TAAGAATTATAACTGATAAACCTGATTTTCTTGCAGTT--CCCGGTCGGAC-AATTACATAACTCGAAGAAGA-CACAATGTCGCAGGCT
droKik1 scf7180000302475:2277253-2277468 + GCTGTTTTAAGGTTATAC-TTCAGCTTCGA-------------------------TTTT-GGGTAATTTTCGC--AATTTTAACGA-AAAAA-GTGG-AC------------------A-AGAAA--AAAGAG--------TAAAAAGCTT--TTGC--TGGT----------------------GTATA-AAGTACC-AC-AA-G-AAACG----------------------TACG-G-CC---------CAAAGTTTACGACTAACATCTCCCCCTTTATTCCAGTTTCCCCGGTTGGAC-CATTACATAACTCCCAGAAAAGAACCATGTCGCAGGCT
droAna3 scaffold_13340:339139-339352 + GCTGATTTAAGGTTATACCTG-CGCTGCCGT--------TTCT----------GAATTC-TGGTAAATTT-TC--TAATTTGATAACA---ATTTGT-GG-T----------------A--AAG---TATGGAA-------AAAAGAGAGT-----CGGC-GC----------------------TTAAA-GGA--ATTAA-GGAGGAGT----------------------CCATCT-C-AC---------TA-CAAAAGTCACTTACGTGTCTTTTTTCCTTGCAGTT--CACGGTCGA---CATTACATAACTATCCTGCGC-AAAGATGTCGCAAGCT
droBip1 scf7180000394085:632850-633063 - GCTGATTTAAGGTTATACCTG-CGCTGCCGT--------TTCT----------GAATTC-TGGTAAATTT-GC--TAATTTGATAACA-AA--TTGTGGT------------------A--AAG---TATTGATTAAGGA-GA------AA-----AAGC-AC----------------------TTGGA-GGA--ATCAA-GAAGGGAG----------------------CCATCT-C-AC---------TA-TCAAATTCACTAATGCCCCCGTTTTCCTTGCAGTT--CACGGTCGA---CATTACATAACTATCCTGCGC-AAAGATGTCCCAAGCT
dp5 2:16198019-16198239 + GCTGTTTTAAGGTTATAT-TT-TGCTACTGT--------TGCAATCGC---ATCGATTTGTGGTAATTGC-GC--TTATTTAATAG-ATT-ATTTGG-AT------------------A-AAAAAACCAGC--CGCAAGTG-A------AA-----CGGTG-A----------------------TTGAAACGC--CGTCTCTG-AGGAA----------------------CCTTTG-A-AA---------TAGTGTACGTAACTGATGTGTCCTCTTTTCTTGCAGTT--TTCGGTCGGAC-CATTACATAACTA------CT-AGCCATGTCTCAGCCT
droPer2 scaffold_0:4203189-4203408 - GCTGTTTTAAGGTTATAT-TT-TGCTACTGT--------TGCAATCGC---ATCGATTTGTGGTAATTGC-GC--TTATTTAATAG-ATT-ATTTGG-ATAT----------------A-AAAC---CAGC--CGCAAGTG-A------AA-----CGGTG-G----------------------TTGAAACGC--CGTCTATG-AGGAG----------------------CCTTTG-A-AA---------TAGTGTACGTAATTGATGTGTTCTCTTTTCTTGCAGTT--TTCGGTCGGAC-CATTACATAACTA------CT-AGCCATGTCTCAGCCT
droWil2 scf2_1100000004902:10152761-10152970 - GCTGCTTTAAGGTTATAT-TT-TGCATCGGT--------TGCAAGAG-------AATTT--GGTAATTGTTGG--AAATTTGTTAA-ATA-A-TTC-----------AAGAAATA-GTA-----------------------------AATTTTTGCTGG--A---GTTGACCGAC----------------------TTT-CG-GCAAA------------CAGTTGAAGCCCTTGC-A-AA---------TAA-----GTGTCTAATTTAACGTTTCCCATTGCAGTT--GTCGTTTGGACCAATTACATAACTTT--------AACCATGTCCCAGGCT
droVir3 scaffold_13047:14785880-14786094 - GCTGCTTTAAGGTTATAC-TA-CTAT--TGTAGTGGACTTGAATTCGTAAAATTTA-T--TGGTAAATAT-GC--GATA----------------------TAAAACAATATATTGGTTTAT-TTATTTCG--CACAAACG-A------AA-----TGA---G----------------------TTG-----------C--CAGT-TCG--------------------------------CATTTGTATTTAACTCAGACAACTGACGCATTCCTTTTCCTTGCAGAT--ATTAGTCTGCT-CATTACATAACTA-----ACC-AGCTATGTCTCAGGCT
droMoj3 scaffold_6540:18233700-18233914 - GCTGCTTTAAGGTTATAC-TA-CTAT--TGTAGTGGACTTGAATTCGCATAATTA--T--TGGTAAATAT-AATTTTATTTAGTAG-ATT------------------------------------------------------------------CTGTGATTTATT--ACTTATCGTATGCATTT------------------TG-TACAACTTAATATATAGTTG------GTA-TCAAA--------------CAAAGAACTGACACATTCGTTTTCCTTGCAGCT--ATTGGTCTTCA-CATTACATAACTA-----ACC-AGCTATGTCTCAGGCT
droGri2 scaffold_14830:5195640-5195853 + GCTGCTTTAAGGTTATAC-TA-CGAT--TGTAGTGGACATAAAATCGCATAACT-TTT--TGGTAAATAT-AT--TATCTTAATATAA-AATATAG--AT------------------A---------------------------------------GTGCCGCAGC--ACAGATTTTAGGCGCTT------------CA-CAGTG-CA--------------------------------CAAATATAATT-AGCCGGTCAACTGACACGAGTGTTTTTCTTGCAGCT--ATTGCTCGGTA-CATTACATAACTA-----ACC-AGATATGTCTCAGGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCA-AATATTGC-AT------------------A-AAAC---TAGGAA--------AACGAAGAAT-----CTGTAAA----------------------GTGGA-GAG--GG-AC-AG-G-GAACG----------------------CTA-TTAAC---------AAAGTTGGATAACTAAAGTACATCCTCTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................GGAC-AATTACATAACTTGAAGAA...................2313.00300300000000000000
..........................................................................................................................................................................................................................................................................................................CGGAC-AATTACATAACTTGAAGAAGA-................2613.00300300000000000000
.............................................................................................................................................................................................................................................................................................CAGTT--CACGGTCGGAC-AATTG.................................2112.00200000000000002000
....TTTTAAGGTTATAC-TG-CGC.............................................................................................................................................................................................................................................................................................................................1912.00200002000000000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACATAACT..........................2412.00200100000100000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACATAAC...........................2312.00200200000000000000
.............................................................................................................................................................................................................................................................................................CAGTT--CACGGTCGGAC-AATTA.................................2112.00200000000000002000
....................................................................................................................................................................................................................................................................................................CACGGTCGGAC-AATTACATAACT..........................2312.00200200000000000000
............................................................................................................................................................................................................................................................................................................................TGAAGAAGA-AACCATGTCGCAGGCT2512.00200100001000000000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAGA-................2012.00200010000000100000
..........................................................................................................................................................................................................................................................................................................CGGAC-AATTACATAACTTGAAGAAGA-A...............2712.00200100010000000000
...........GTTATAC-TG-CGCTGCCGT--------T..............................................................................................................................................................................................................................................................................................................1912.00200000000002000000
...........GTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2112.00200010000000100000
.............TATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2012.00200000000000200000
...........................CCGT--------TGCAATCGCTCC...................................................................................................................................................................................................................................................................................................1611.00100000000010000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACATAA............................2211.00100000000000010000
................................................................................................................................................................................................................................................................................................................................GAAGA-AACCATGTCGCAGGCT2111.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................AGAAGA-AACCATGTCGCAGGC.2111.00100010000000000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACATAACTTGAA......................2811.00100000010000000000
..........GGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2211.00100010000000000000
........................................................................................................................................................................................................................................................................................................GTCGGAC-AATTACATAACTTGAAGAAGA-................2811.00100000010000000000
.......................GCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................1811.00110000000000000000
........AAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.........................................................................................................................................................................................................................................................................................................TCGGAC-AATTACATAACTTGA.......................2111.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................TTGAAGAAGA-AACCATGTCGCAGGC.2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................CACGGTCGGAC-AATTACAT..............................1911.00100100000000000000
..............................................................................................................................................................GTAAA----------------------GTGGA-GAG--GG-AC-AA-.........................................................................................................................................1911.00100000000000001000
GCTGTTTTAAGGTTATAC-TG-CGCT............................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.....TTTAAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGGAC-AATTACATAACT..........................2611.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................AACCATGTCGCAGGC.1511.00100000010000000000
.................C-TG-CGCTGCCGT--------TGCAAG.........................................................................................................................................................................................................................................................................................................1811.00100000000001000000
....................................................................................................................................................................................................................................................................................................CACGGTCGGAC-AATTACATAACTTGAA......................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................AGA-AACCATGTCGCAGGCT1911.00101000000000000000
.......................GCTGCCGT--------TGCAATCGCTC....................................................................................................................................................................................................................................................................................................1911.00100010000000000000
........................................................................................................................................................................................................................................................................CTAAAGTACATCCTCTTCTTGCAG......................................................2411.00100100000000000000
...................................................................................................................................AA--------AACGAAGAAT-----CTG.......................................................................................................................................................................................1540.25100000000001000000
droSec2
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCA-AAAATTGC-AT------------------A-AAAC---TAGGAA--------AACGAAGAAT-----CTGTAAA----------------------GTGCA-GAG--GG-AC-AG-G-GAACG----------------------GTA-TTAAC---------AAAGTTTGATAACTAAAGTGAACCCTTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............ATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................19111.00111091
..............ATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................18111.001100110
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAGA-................2016.0061230
.............TATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................1913.0030030
..............ATAC-TG-CGCTGCCGT--------TGCAATC........................................................................................................................................................................................................................................................................................................2212.0020020
..................................................................................................................................................................................................................................................................................................................TTACATAACTTGAAGAAGA-................1912.0020020
..........................................................................................................................................................................................................................................................................................................CGGAC-AATTACATAACTTGAAGAAGA-................2612.0020020
......TTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2111.0010100
..........................GCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2111.0011000
.........AGGTTATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2411.0011000
......TTAAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2611.0010010
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACCATGTCGCA....2711.0010100
................................................................................................................................AGGAA--------AACGAAGAAT-----CTG.......................................................................................................................................................................................1811.0010001
..........................................................................................................................................................................................................................................................................................................................CTTGAAGAAGA-AACCATGT........1911.0010010
..TGTTTTAAGGTTATAC-TG-CGC.............................................................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................AGAAGA-AACCATGTCGCA....1811.0010010
...............................................................................................................................................................................................................................................................................................................................AGAAGA-AACCATGTCGCAGGC.2111.0010100
................................................................................................................................................................................................................................................................................................................AATTACATAACTTGAAGAAGA-AACC............2511.0010010
..........................GCCGT--------TGCAATCGCTCCACCAAT.............................................................................................................................................................................................................................................................................................2311.0010001
.................C-TG-CGCTGCCGT--------TGCAATC........................................................................................................................................................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................................................TACATAACTTGAAGAAGA-................1811.0010010
................................................................................................................................................................................................................................................................................................................AATTACATAACTTGAAGAAG..................2011.0010010
...............................................................................................................................................................................................................................................................................................................................AGAAGA-AACCATGTCGCAGG..2011.0010010
......TTAAGGTTATAC-TG-CGCTGCCG........................................................................................................................................................................................................................................................................................................................2211.0010100
...........GTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................C-AATTACATAACTTGAAGAAGA-................2211.0010001
............................CGT--------TGCAATCGCTCCACCAATTT--GGTAA....................................................................................................................................................................................................................................................................................2811.0011000
......................CGCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................1911.0010010
.............TATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2011.0010001
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACC............1911.0010010
...............................................................................................................................................................................................................................................................................GAACCCTTTTCTTGCAGTT--..................................................1911.0010010
..........................GCCGT--------TGCAATCGCTCCACCAATT............................................................................................................................................................................................................................................................................................2411.0010010
.CTGTTTTAAGGTTATAC-TG-CGCT............................................................................................................................................................................................................................................................................................................................2311.0010100
.............................GT--------TGCAATCGCTCCACCAATTT--GG.......................................................................................................................................................................................................................................................................................2411.0011000
.........................TGCCGT--------TGCAATCGCTCCAC.................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................AACGAAGAAT-----CTGTAAA----------------------GTGC.........................................................................................................................................................2111.0010001
.....TTTAAGGTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................2411.0010100
.........AGGTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................2011.0010100
................AC-TG-CGCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................2311.0010001
...........GTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAG..................1911.0010010
.......................GCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................1811.0010010
......................CGCTGCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2511.0010001
.................................................................................................................................................................................................................................................................TTGATAACTAAAGTGAACC..................................................................1911.0011000
...GTTTTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2411.0010010
...GTTTTAAGGTTATAC-TG-CGCT............................................................................................................................................................................................................................................................................................................................2111.0010010
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGGAC-AATTACATAACTTG........................2811.0010100
...........................CCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2011.0010010
........AAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2411.0010100
................................................................................................................................................................................................................................................................................................................AATTACATAACTTGAAGAAGA-................2111.0010010
...GTTTTAAGGTTATAC-TG-CGCTG...........................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................................................................................................................................................................GG-AC-AG-G-GAACG----------------------GTA-TTAAC---------AAA.......................................................................................2311.0010010
............TTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................................................................................................................................................................................CTTTTCTTGCAGTT--CACGGTC...........................................2111.0010100
dm3
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACATCA-AATATTGC-AT------------------A-AAAC---TAGGAA--------AACCAGGAAT-----CTGTAAA----------------------GTGGA-GCG--AG-AC-GG-G-GAACG----------------------CTA-TTAAG---------GAAGTCGGATAACTAAAGTACATCCTTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACCATGTCGC.....26138.0038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AACTTGAAGAAGA-AACCATGTCGC.....24122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................18119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........GTTATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................22116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013
....................G-CGCTGCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................26115.00150000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000002400000000000010100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCTGTTTTAAGGTTATAC-TG-CGCT............................................................................................................................................................................................................................................................................................................................24110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGTTATAC-TG-CGCTGCCG........................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000100000000000000000000000000000000000000000000000000000000000000000000010000000010000010000100000010000
.............TATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
..............ATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000002000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................G-CGCTGCCGT--------TGCAATCGCTCCACC................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000500000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000
....................................................................................................................................................................................................................................................................................................................ACATAACTTGAAGAAGA-AACCATGT........2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGTTATAC-TG-CGCTGCCGT--------TG.............................................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACATAACT..........................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACATAACTTGA.......................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACA...............................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAACTTGAAGAAGA-AACCA...........1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACATAACTTGAAGAAGA-AACC............2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCGGAC-AATTACATAACTTGAAGAAGA-................2714.0040000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGGAC-AATTACATAACT..........................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................G-CGCTGCCGT--------TGCAATCGCTCCA..................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTGAAGAAGA-AACCATGTCGCA....2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................G-CGCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GAAGAAGA-AACCATGTCGCAG...2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000200000000000000000000000000
...................TG-CGCTGCCGT--------TGCAATCGCTCCA..................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TG-CGCTGCCGT--------TGCAATCGCTCC...................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAACTTGAAGAAGA-AACCATGTCGCA....2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGGAC-AATTACATA.............................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CACGGTCGGAC-AATTACATAACT..........................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTGAAGAAGA-AACCATGTCGC.....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
....................G-CGCTGCCGT--------TGCAATCGCTCC...................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CGGTCGGAC-AATTACATA.............................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATAC-TG-CGCTGCCGT--------TGCAATC........................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TACATAACTTGAAGAAGA-AAC.............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................AC-TG-CGCTGCCGT--------TGCAATC........................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAGA-................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...................TG-CGCTGCCGT--------TGCAATC........................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TAAG---------GAAGTCGGATAACT............................................................................1812.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ACTTGAAGAAGA-AACCATG.........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....TTTAAGGTTATAC-TG-CGCTG...........................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................ACGGTCGGAC-AATTACATAA............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCG-AAAATTGC-AT------------------A-AAAT---TAGGAG--------CTCAAGGAGT-----CTGTAAA----------------------GTGGA-GAG--CGCGC-AG-G-GAACG--------------------CAGTCT-T-AC---------CAAGAAGCATTACTAAATTGCAATCCTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAGA-................2014.0042000110
..............ATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................1814.0040200020
.............TATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................1913.0030201000
...GTTTTAAGGTTATAC-TG-CGCT............................................................................................................................................................................................................................................................................................................................2112.0020000110
.............TATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2012.0022000000
.........................TGCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2212.0021100000
................................................................................................................................................................................................................................................................................................................AATTACATAACTTGAAGAAGA-................2112.0021000010
......TTAAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2611.0010100000
....................................................................................................................................................................................................CGCGC-AG-G-GAACG--------------------CAGTCT-T-AC---------CAAGA.....................................................................................2711.0010000010
.......................................................................................................................................................................................................GC-AG-G-GAACG--------------------CAGTCT-T-AC---------CA........................................................................................2111.0010000100
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGGAC-AATTACAT..............................2211.0010100000
....................................................................................................................................G--------CTCAAGGAGT-----CTGTAAA----------------------GTGGA-.......................................................................................................................................................2311.0010001000
..........................GCCGT--------TGCAATCGCTCCACCAA..............................................................................................................................................................................................................................................................................................2211.0011000000
........................................................................................................................................................................................................................................................................................................................AACTTGAAGAAGA-AACCATGC........2111.0010100000
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACCATGTCGC.....2611.0010100000
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACCATGTCGCAGG..2911.0010000100
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAG..................1911.0010000100
..............ATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................1911.0010001000
.....TTTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................CATAACTTGAAGAAGA-AACC............2011.0010100000
..........................................................................................................................AT---TAGGAG--------CTCAAGGAGT-----CTT.......................................................................................................................................................................................2111.0010001000
.........................TGCCGT--------TGCAATCGCTCCA..................................................................................................................................................................................................................................................................................................1911.0011000000
......TTAAGGTTATAC-TG-CGCTGCCGT--------TG.............................................................................................................................................................................................................................................................................................................2511.0011000000
.......................GCTGCCGT--------TGCAATCGCTCCAC.................................................................................................................................................................................................................................................................................................2211.0010100000
......TTAAGGTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................2311.0010100000
................................................................................................................................................................................................................................................................................................................................GAAGA-AACCATGTCGCAGGCT2111.0010000100
......................................................................................................................................................................................................................................................................................................CGGTCGGAC-AATTACATAAC...........................2011.0011000000
...........GTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................1811.0011000000
........................................GCAATCGCTCCACCAATTT--GGT......................................................................................................................................................................................................................................................................................2211.0010001000
.........AGGTTATAC-TG-CGCTGCCG........................................................................................................................................................................................................................................................................................................................1911.0011000000
..........GGTTATAC-TG-CGCTGCCG........................................................................................................................................................................................................................................................................................................................1811.0011000000
................................................................................................................................................................................................................................................................................CAATCCTTTCTTGCAGTT--CAC...............................................2111.0010000010
...........................................................................................................................................................................................................................................................................................TGCAGTT--CACGGTCGGAC-AATTACATA.............................2711.0010000010
..............................................................................................................................................................................................................................................................................................................C-AATTACATAACTTGAAGAAGA-AACC............2611.0010000100
.......................................................................................G-AAAATTGC-AT------------------A-AAAT---TAGGAG--------CT.......................................................................................................................................................................................................2411.0010000010
..........GGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2211.0010001000
...................................................................................................................................................................................................................................................................................................................TACATAACTTGAAGAAGA-................1811.0010000010
...GTTTTAAGGTTATAC-TG-CGC.............................................................................................................................................................................................................................................................................................................................2011.0010000010
................................................................................................................................................................................................................................................................................................................................GAAGA-AACCATGTCGCAGGC.2011.0011000000
...GTTTTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2411.0010100000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGGAC-AATTAC................................2011.0010100000
................................................................................................................................................................................................................................................................................................................AATTACATAACTTGAAGAAGA-AAC.............2411.0011000000
.......................................................................................................................................................................................................................................................................................................GGTCGGAC-AATTACATAACT..........................2011.0011000000
............TTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2011.0010100000
..........................................................................................AAATTGC-AT------------------A-AAAT---TAGGAG--------C........................................................................................................................................................................................................2111.0011000000
.............................................................................................................................................................................................................................................................................................................................GAAGAAGA-AACCATGTCGCAGGC.2311.0011000000
............................................................................................................................................................CTGTAAA----------------------GTGGA-GAG--CGCGC-AG-G-.......................................................................................................................................2311.0011000000
.......................GCTGCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2411.0010100000
.............................GT--------TGCAATCGCTCCACCAATTT--G........................................................................................................................................................................................................................................................................................2311.0011000000
...........................................................................................................................................................................................................................................................................................................GGAC-AATTACATAACTTGAAGAAGA-................2511.0010000010
..............ATAC-TG-CGCTGCCGT--------TGCAATCGCTCC...................................................................................................................................................................................................................................................................................................2711.0010100000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAGA-AAC.............2311.0011000000
...........GTTATAC-TG-CGCTGCCGT--------TGCAATC........................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................................................................................................................................................................................C-AATTACATAACTTGAAGAAGA-................2211.0010000100
...........GTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2111.0010001000
...................................................................................................................................................................................................................................................................................................................TACATAACTTGAAGAAGA-AACC............2211.0011000000
.........................TGCCGT--------TGCAATCGCTCCACC................................................................................................................................................................................................................................................................................................2111.0010100000
..........................................................................................................................AT---TAGGAG--------CTCAAGGAGT-----CT........................................................................................................................................................................................2011.0010000100
droYak3
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT--GGTAATTTT-GC--TTATTTAACACCG-AAAATTGC-AT------------------A-AAAT---TCGCAA--------CTCAAGGAAT-----CTGTAAA----------------------GTGGA-GGG--CGTGC-AG-G-GAACG--------------------CAGTCGTTAA-----------AAGTAGCATTACTAAATGACACCCTTTTCTTGCAGTT--CACGGTCGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......TTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2113.00300200010000
..............ATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................1913.00300030000000
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACCATGTCGC.....2613.00300300000000
.............TATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2012.00201000010000
....................G-CGCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................2012.00201000010000
...........GTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2112.00200001010000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAGA-................2012.00200000020000
.....TTTAAGGTTATAC-TG-CGCTGCCGT--------TG.............................................................................................................................................................................................................................................................................................................2612.00202000000000
....................................................................................................................................................................................................................................................................................................CACGGTCGGAC-AATTACATAACT..........................2312.00220000000000
..........................................................................................................................................................................................................................................................................................................CGGAC-AATTACATAACTTGAAGAAGA-................2612.00210000010000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTTGAAGAAG..................1912.00201000010000
..................................................................................................................................................................................................................................................................................................................TTACATAACTTGAAGAAGA-................1911.00101000000000
....................G-CGCTGCCGT--------TGCAATCGCTCCACCA...............................................................................................................................................................................................................................................................................................2611.00100100000000
..............................................................................................................................................................................................................................................................................................................................AAGAAGA-AACCATGTCGCAGG..2111.00100000010000
.........................................................................................................................................................................................................................................AGTCGTTAA-----------AAGTAGCATTACTAAATGA......................................................................2811.00101000000000
.........................................................................................................................................................................................................................................................................................................TCGGAC-AATTACATAACTTGAAGAAGA-A...............2811.00101000000000
GCTGTTTTAAGGTTATAC-T..................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.................C-TG-CGCTGCCGT--------TGCAATCGCTCCA..................................................................................................................................................................................................................................................................................................2511.00101000000000
.............TATAC-TG-CGCTGCCGT--------TGCAATCGCC.....................................................................................................................................................................................................................................................................................................2611.00100100000000
...............................................................................................................................................................................................................................................................................................................................AGAAGA-AACCATGTCGCAGG..2011.00100000010000
......................CGCTGCCGT--------TGCAATCGCT.....................................................................................................................................................................................................................................................................................................1911.00101000000000
...............TAC-TG-CGCTGCCGT--------TGCAATCGCTCCA..................................................................................................................................................................................................................................................................................................2711.00100010000000
.........AGGTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................................................TAACTTGAAGAAGA-AACCATGTC.......2311.00100000100000
.....TTTAAGGTTATAC-TG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................2411.00100000100000
..............ATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................1811.00100010000000
..TGTTTTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2511.00110000000000
..................................................................................................AT------------------A-AAAT---TCGCAA--------CTCAAGGA.................................................................................................................................................................................................2111.00100100000000
.................................................................................................................................................................................................................................................................................................T--CACGGTCGGAC-AATTACAT..............................2011.00110000000000
..........GGTTATAC-TG-CGCTGCCGT--------T..............................................................................................................................................................................................................................................................................................................2011.00101000000000
................................................................................................................................................................................................................AACG--------------------CAGTCGTTAA-----------AAGTAGC..................................................................................2111.00110000000000
.....................................................................................................................................................................................................................................................................................................ACGGTCGGAC-AATTACATAACTTGAAG.....................2711.00110000000000
......................................................................................................................................................................................................................................................................................................................ATAACTTGAAGAAGA-AACCA...........2011.00100000010000
.........AGGTTATAC-TG-CGCTGCCGT--------TGCA...........................................................................................................................................................................................................................................................................................................2411.00101000000000
.CTGTTTTAAGGTTATAC-TG-CGCT............................................................................................................................................................................................................................................................................................................................2311.00100100000000
.......................GCTGCCGT--------TGCAATCGCTCCA..................................................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................TAACTTGAAGAAGA-AACCATGTCGCAGGC.2911.00100000010000
...........GTTATAC-TG-CGCTGCCGT--------TG.............................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................ATTTT-GC--TTATTTAACACCG-A............................................................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................GAAGA-AACCATGTCGCAGGCT2111.00100000010000
..............ATAC-TG-CGCTGCCGT--------TGCAATCGCTC....................................................................................................................................................................................................................................................................................................2611.00101000000000
.CTGTTTTAAGGTTATAC-TG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2611.00100100000000
GCTGTTTTAAGGTTATAC-TG-CGC.............................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................GAAGA-AACCATGTCGCAGGC.2011.00101000000000
.....TTTAAGGTTATAC-TG-CGCTGC..........................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................GCCGT--------TGCAATCGCTCCAC.................................................................................................................................................................................................................................................................................................1911.00100100000000
........AAGGTTATAC-TG-CGCTGCCGT--------TGC............................................................................................................................................................................................................................................................................................................2411.00101000000000
.......TAAGGTTATAC-TG-CGCTGCCGT--------TGCAAT.........................................................................................................................................................................................................................................................................................................2811.00101000000000
droEug1
GCTGTTTTAAGGTTATAC-TG------CCGT--------TGCAATCGCTTCGCCAATTC--GGTAATTTT-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAC---CCAAAT--------AAAAAGGGAA-----CTATTAA----------------------GCGAA-GGA--TGTAT-AG-GGAAA----------------------CCGTTT-A-AC---------CGTGTTCGATAACTAAACTACTTTTTTCTCTTGCAGTT--CTCGGTTGGAC-AATTACATAACTTGAAGAAGA-AACCATGTCTCAGGCTSizeHit CountTotal NormTotal
No Reads
droBia1
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT-GGGTAATTTT-GC--TTATTTAACACCA-AAAGTTGC-AA------------------A-AAAG---CTTAAG--------GACAATAGAT-----CTGTGAA----------------------GTACA-GGG--TGGAC-AG-GGGTG----------------------CCCCT-TTAAC---------CTTATTGGATTACTAAAGTTCACCCTTTTCTTGCAGTT--CACGGTCGGAC--ATTACATAACTCGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotal
No Reads
droTak1
GCTGTTTTAAGGTTATAC-TG-CGCTGCCGT--------TGCAATCGCTCCACCAATTT-GGGTAATTTC-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAA---CAAGAG--------GACAAGGGAT-----CTGTATA----------------------GTGGA-GGG--CCTAC-TG-GGCGG----------------------CCGTTT-CAAC---------G-ATTGAGATTACTAAAAGATAGTCTTTTCTTGCAGTT--CACGGACGGAC-AATTACATAACTCGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotal
No Reads
droEle1
GCTGATTTAAGGTTATAC-TG---CTGCCGT--------TGCAATCGTTCCACCAATTT-GGGTAATTTC-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAA---TAAAGG--------AAGAAGGGTT---TTCTGCAGT----------------------GCAGA-GGG--AGTAC-TG-GGGAA----------------------CCTCGG-A-AG---------TAAGATGTATAACTGATAGTCCCCAATTTCTTGCAGTT--CCCGGTCGGAA-AATTACATAACTTGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotal
No Reads
droRho1
GCTGTTTTAAGGTTATAC-TG---CTGCCAC--------TGCAATCGCTCTACCAATTT-GGGTAAATTC-GC--TTATTTAACACCA-AAAGTTGC-AT------------------A-AAAG---CAAAGG--------AAGAAGGGTT-----CTGCAAT----------------------GTATA-GGG--AGTGC-AG-GAGAA----------------------CCCCAA-A-TG---------TAAGATGTATAACTGATATACCCAAATTTCTTGCAGTT--CCCGGTCGGAC-AATTACATAACTCGAAGAAGA-AACCATGTCGCAGGCTSizeHit CountTotal NormTotal
No Reads
droFic1
GCTGTTTTAAGGTTATAC-TG-CGCTACCGT--------TGCAATCGCTCCACCAATTT-GGGTAATTTT-GC--TTACTTAATACAA-AAAATTGC-AT------------------A-AAAG---CAAAGG--AA----TATA---AAG-----CTGTGAA----------------------GTGGA-GGA--CGTTCCCA-GGAAA----------------------TCTCTA-A-GC---------TAAGAATTATAACTGATAAACCTGATTTTCTTGCAGTT--CCCGGTCGGAC-AATTACATAACTCGAAGAAGA-CACAATGTCGCAGGCTSizeHit CountTotal NormTotal
No Reads
droKik1
GCTGTTTTAAGGTTATAC-TTCAGCTTCGA-------------------------TTTT-GGGTAATTTTCGC--AATTTTAACGA-AAAAA-GTGG-AC------------------A-AGAAA--AAAGAG--------TAAAAAGCTT--TTGC--TGGT----------------------GTATA-AAGTACC-AC-AA-G-AAACG----------------------TACG-G-CC---------CAAAGTTTACGACTAACATCTCCCCCTTTATTCCAGTTTCCCCGGTTGGAC-CATTACATAACTCCCAGAAAAGAACCATGTCGCAGGCTSizeHit CountTotal NormTotal
No Reads
droAna3
GCTGATTTAAGGTTATACCTG-CGCTGCCGT--------TTCT----------GAATTC-TGGTAAATTT-TC--TAATTTGATAACA---ATTTGT-GG-T----------------A--AAG---TATGGAA-------AAAAGAGAGT-----CGGC-GC----------------------TTAAA-GGA--ATTAA-GGAGGAGT----------------------CCATCT-C-AC---------TA-CAAAAGTCACTTACGTGTCTTTTTTCCTTGCAGTT--CACGGTCGA---CATTACATAACTATCCTGCGC-AAAGATGTCGCAAGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................T--CACGGTCGA---CATTACATAAC...........................2114.004000004
...........................................................................................................................................................................................................................................................................................................GA---CATTACATAACTATCCTGC...................2113.003120000
................................................................................................................................................................................................................................................................................................................CATTACATAACTATCCTGCGC-................2112.002020000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTATCCTGCGC-................2012.002010010
.........................................................................................................................................................................................................................................................................................................TCGA---CATTACATAACTATCCTGC...................2311.001100000
..............ATACCTG-CGCTGCCGT--------TTCT----------GA...............................................................................................................................................................................................................................................................................................2211.001001000
................................................................................................................................................................................................................................................................................................................CATTACATAACTATCCTGC...................1911.001010000
........................................................................................................................................................................................................................................................................................................................AACTATCCTGCGC-AAAGATGTCGCAAGCT2911.001010000
...................................................................................................................................................................................................................................................................................................................TACATAACTATCCTGCGC-AAAGATGT........2611.001010000
...........................................................................................................................................................................................................................................................................................................................TATCCTGCGC-AAAGATGTCGC.....2111.001010000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGA---CATTACATA.............................2111.001000001
..........................................................................................................................................................................................................................................................................................................CGA---CATTACATAACTATCCT.....................2011.001010000
............TTATACCTG-CGCTGCCGT--------TTCT----------GA...............................................................................................................................................................................................................................................................................................2411.001010000
..........................................................................................................................................................................................................................................................................................................................CTATCCTGCGC-AAAGATGTCA......2111.001000010
........AAGGTTATACCTG-CGCTGCCGT--------TTCT----------GAA..............................................................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................................................................................................................................................................................GA---CATTACATAACTATCCT.....................1911.001100000
............................................................................................................................................................................................................................................................................................................................ATCCTGCGC-AAAGATGTCG......1911.001000001
..................................................................................................................................................................................................................................................................................................................TTACATAACTATCCTGCGC-................1911.001010000
................................................................................................................................................................................................................................................................................................................................TGCGC-AAAGATGTCGCAAGC.2011.001000001
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGA---CATTACA...............................1911.001010000
................................................................................................................................................................................................................................................................................................TT--CACGGTCGA---CATTACATAAC...........................2211.001000001
.......................................................................................................................................................................................................................................................................................................GGTCGA---CATTACATAACTATCCTGCGC-................2711.001010000
........................................................................................................................................................................................................................................................................................................................AACTATCCTGCGC-AAAGATGT........2111.001001000
...........GTTATACCTG-CGCTGCCGT--------TTCT----------.................................................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................ATAACTATCCTGCGC-AAAGATGTCGC.....2611.001000010
................................................................................................................................................................................................................................................................................................................CATTACATAACTATCCTGCGC-AAA.............2411.001010000
................ACCTG-CGCTGCCGT--------TTCT----------GAA..............................................................................................................................................................................................................................................................................................2111.001001000
..................CTG-CGCTGCCGT--------TTCT----------GAATTC-TG........................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTATCCTGCGC-AAAGATGC........2811.001010000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGA---CATTACATAACTATCC......................2811.001100000
...........................................................................................................................................................................................................................................................................................TGCAGTT--CACGGTCGA---CATTAA................................2211.001000010
.....TTTAAGGTTATACCTG-CGCTGC..........................................................................................................................................................................................................................................................................................................................2211.001010000
..........................................................................................................................................................................................................................................................................................................CGA---CATTACATAACTATCCTGCGC-................2411.001010000
..............ATACCTG-CGCTGCCGT--------TTCT----------.................................................................................................................................................................................................................................................................................................2011.001010000
...............TACCTG-CGCTGCCGT--------TTCT----------GAAT.............................................................................................................................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................................................................................................................TTACATAACTATCCTGCGC-AAAGA...........2411.001000001
..............................................................................................................................................................................................................................................................................................................................CCTGCGC-AAAGATGTCGCAAGCT2311.001000001
.....................................................................................................................................................................................................................................................................................................................CATAACTATCCTGCGC-AAAGA...........2111.001100000
......................................................................................................................................................................................................................................................................................................CGGTCGA---CATTACATAACTATCCTGCGC-................2811.001100000
..............ATACCTG-CGCTGCCGT--------TTC............................................................................................................................................................................................................................................................................................................1911.001010000
.......TAAGGTTATACCTG-CGCTGCCGT--------...............................................................................................................................................................................................................................................................................................................2311.001100000
........AAGGTTATACCTG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2011.001010000
...................TG-CGCTGCCGT--------TTCT----------GAATTC-T.........................................................................................................................................................................................................................................................................................2211.001001000
...............TACCTG-CGCTGCCGT--------TTCT----------.................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................GTT--CACGGTCGA---CATTACATAACTAT........................2611.001100000
......TTAAGGTTATACCTG-CGCTGCC.........................................................................................................................................................................................................................................................................................................................2211.001010000
..................CTG-CGCTGCCGT--------TTCT----------GAATT............................................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................TATCCTGCGC-AAAGATGTCGCA....2211.001000010
.......................................................................................................................................................................................................................................................................................................GGTCGA---CATTACATAACTATCCTGC...................2511.001010000
droBip1
GCTGATTTAAGGTTATACCTG-CGCTGCCGT--------TTCT----------GAATTC-TGGTAAATTT-GC--TAATTTGATAACA-AA--TTGTGGT------------------A--AAG---TATTGATTAAGGA-GA------AA-----AAGC-AC----------------------TTGGA-GGA--ATCAA-GAAGGGAG----------------------CCATCT-C-AC---------TA-TCAAATTCACTAATGCCCCCGTTTTCCTTGCAGTT--CACGGTCGA---CATTACATAACTATCCTGCGC-AAAGATGTCCCAAGCTSizeHit CountTotal NormTotal
No Reads
dp5
GCTGTTTTAAGGTTATAT-TT-TGCTACTGT--------TGCAATCGC---ATCGATTTGTGGTAATTGC-GC--TTATTTAATAG-ATT-ATTTGG-AT------------------A-AAAAAACCAGC--CGCAAGTG-A------AA-----CGGTG-A----------------------TTGAAACGC--CGTCTCTG-AGGAA----------------------CCTTTG-A-AA---------TAGTGTACGTAACTGATGTGTCCTCTTTTCTTGCAGTT--TTCGGTCGGAC-CATTACATAACTA------CT-AGCCATGTCTCAGCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................TAACTA------CT-AGCCATGTCTCAGCCT2416.0060600000000
......................TGCTACTGT--------TGCAATCGC---ATCGATT............................................................................................................................................................................................................................................................................................2514.0040400000000
.......TAAGGTTATAT-TT-TGCTACTGT--------TG.............................................................................................................................................................................................................................................................................................................2414.0040000000400
...................................................................................................................................................................................................................................................................................................................TACATAACTA------CT-AGCCATGTCTCAGCCT2814.0040211000000
......................TGCTACTGT--------TGCAATCGC---ATC................................................................................................................................................................................................................................................................................................2112.0020200000000
.............TATAT-TT-TGCTACTGT--------TGC............................................................................................................................................................................................................................................................................................................1912.0020200000000
....................................................TCGATTTGTGGTAATTGC-GC--TTATT......................................................................................................................................................................................................................................................................2512.0020101000000
.........................................................................................................................................................................................................................................................................................................TCGGAC-CATTACATAACTA------CT-AGCC............2512.0020200000000
.............................................CGC---ATCGATTTGTGGTAATTG.................................................................................................................................................................................................................................................................................2111.0010000001000
..........................ACTGT--------TGCAATCGC---ATCGAT.............................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................TT--TTCGGTCGGAC-CATTAC................................1911.0010000010000
..................................................................................................................................................................................................................................................A---------TAGTGTACGTAACTGATGTG......................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................ACTGATGTGTCCTCTTTTCTTGCA.......................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................TT--TTCGGTCGGAC-CATTACA...............................2011.0010000000010
................................................................................................................................................................................................................................................................................................................CATTACATAACTA------CT-AGCCATGTCT......2511.0010000100000
.....................................................................................................................................................................................................................................................................................TTTTCTTGCAGTT--TTCGGTCG..........................................2111.0010100000000
.............................GT--------TGCAATCGC---ATCGATTTGTGT.......................................................................................................................................................................................................................................................................................2311.0010000001000
...............................................C---ATCGATTTGTGGTAATTGC-GC--T..........................................................................................................................................................................................................................................................................2311.0010000010000
............................TGT--------TGCAATCGC---ATCGATTTGTGT.......................................................................................................................................................................................................................................................................................2411.0010000100000
...............................................................................TTAATAG-ATT-ATTTGG-AT------------------A-AA............................................................................................................................................................................................................................2111.0010100000000
............TTATAT-TT-TGCTACTGT--------TGC............................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................T--TTCGGTCGGAC-CATTACATA.............................2111.0010000000010
...............................................C---ATCGATTTGTGGTAATTGC-GC--TTATT......................................................................................................................................................................................................................................................................2711.0010100000000
..............ATAT-TT-TGCTACTGT--------TGC............................................................................................................................................................................................................................................................................................................1811.0010010000000
..............ATAT-TT-TGCTACTGT--------TGCAATCGC---ATCGAT.............................................................................................................................................................................................................................................................................................3011.0010000001000
.........................................................................................................................................................................................................................................................................................................................ACTA------CT-AGCCATGTCTCAGCCT2211.0010100000000
...........................CTGT--------TGCAATCGC---ATCGATTTGTG........................................................................................................................................................................................................................................................................................2411.0010100000000
........................CTACTGT--------TGCAATCGC---ATCG...............................................................................................................................................................................................................................................................................................2011.0010100000000
......................TGCTACTGT--------TGCAATCGC---ATCGAAAA...........................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................TTCGGTCGGAC-CATTACATA.............................2011.0010000000010
.............................................................................................................................................................................................................................................................................................................AC-CATTACATAACTA------CT-AGCCATGTC.......2611.0010100000000
...................TT-TGCTACTGT--------TGCAATCGC---ATCG...............................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................GCAAGTG-A------AA-----CGGTG-A----------------------TTG..........................................................................................................................................................1911.0010000001000
................AT-TT-TGCTACTGT--------TGCAATCGC---ATC................................................................................................................................................................................................................................................................................................2511.0010001000000
...................................................................................................................................................................................................................................................................................................................TACATAACTA------CT-AGCCATGTCTCAGC..2611.0010010000000
............................................................................................................................AACCAGC--CGCAAGTG-A------AA-----C.........................................................................................................................................................................................1911.0010001000000
...................................................................................................................................................................................................................................................................................................................TACATAACTA------CT-AGCCATGTCTCAGCC.2711.0010100000000
...GTTTTAAGGTTATAT-TT-TGCTACTGT--------TGC............................................................................................................................................................................................................................................................................................................2911.0010010000000
.........................................................................................................................................AGTG-A------AA-----CGGTG-A----------------------TTGAAACG.....................................................................................................................................................2111.0010000010000
........................................................................................................................................AAGTG-A------AA-----CGGTG-A----------------------TTGAAAC......................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................TTGCAGTT--TTCGGTCGGAC-CA....................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................TACATAACTA------CT-AGCCATGTCTCAG...2511.0010100000000
droPer2
GCTGTTTTAAGGTTATAT-TT-TGCTACTGT--------TGCAATCGC---ATCGATTTGTGGTAATTGC-GC--TTATTTAATAG-ATT-ATTTGG-ATAT----------------A-AAAC---CAGC--CGCAAGTG-A------AA-----CGGTG-G----------------------TTGAAACGC--CGTCTATG-AGGAG----------------------CCTTTG-A-AA---------TAGTGTACGTAATTGATGTGTTCTCTTTTCTTGCAGTT--TTCGGTCGGAC-CATTACATAACTA------CT-AGCCATGTCTCAGCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................T--TTCGGTCGGAC-CATTACATAACT..........................2415.005500000
..............ATAT-TT-TGCTACTGT--------TGC............................................................................................................................................................................................................................................................................................................1813.003300000
..........................................................................................................................................................................................................................................................................................................CGGAC-CATTACATAACTA------CT-................2013.003300000
....................................................................................................................................................................................................................................................................GTAATTGATGTGTTCTCTT...............................................................1912.002200000
...................TT-TGCTACTGT--------TGCAATCGC---ATCGATT............................................................................................................................................................................................................................................................................................2712.002020000
..........................................................................................................................................................................................................................................................................................................CGGAC-CATTACATAACTA------CT-AGC.............2311.001100000
..............ATAT-TT-TGCTACTGT--------TGCAATCGC---ATC................................................................................................................................................................................................................................................................................................2711.001001000
........................................................................C--TTATTTAATAG-ATT-ATTTGG-ATA.................................................................................................................................................................................................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................TCGGTCGGAC-CATTACATAACTA------CT-AGC.............2811.001010000
....................T-TGCTACTGT--------TGCAATCGC---ATCGATT............................................................................................................................................................................................................................................................................................2611.001010000
..........................................................................................................................................................................................................................................................................................................CGGAC-CATTACATAACTA------C..................1911.001100000
...................TT-TGCTACTGT--------TGCAATCGC---ATCGAT.............................................................................................................................................................................................................................................................................................2611.001010000
...........GTTATAT-TT-TGCTACTGT--------TGC............................................................................................................................................................................................................................................................................................................2111.001100000
...........GTTATAT-TT-TGCTACTGT--------TG.............................................................................................................................................................................................................................................................................................................2011.001010000
....TTTTAAGGTTATAT-TT-TGCTACTGT--------...............................................................................................................................................................................................................................................................................................................2511.001010000
......................TGCTACTGT--------TGCAATCGC---ATCGATT............................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................TCGGTCGGAC-CATTACATAACTA------CT-AGCC............2911.001010000
......TTAAGGTTATAT-TT-TGCTACTGT--------TGCA...........................................................................................................................................................................................................................................................................................................2711.001010000
..............ATAT-TT-TGCTACTGT--------TGCA...........................................................................................................................................................................................................................................................................................................1911.001001000
........................CTACTGT--------TGCAATCGC---ATCGATTTGT.........................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................................................CGGAC-CATTACATAACTA------CT-AGCC............2411.001100000
.............................GT--------TGCAATCGC---ATCGATTTGTG........................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................AACTA------CT-AGCCATGTCTCAGC..2111.001010000
.........................................................................................................................................................................................................................................................................................................................ACTA------CT-AGCCATGTCTCAG...1911.001010000
........................................................................................................................................................................................................................................................................................................GTCGGAC-CATTACATAACTA------CT-AGCCAT..........2811.001100000
...............................................................................................................................................................................................................................................................................................GTT--TTCGGTCGGAC-CATTACATAACT..........................2611.001100000
....................................................................................................................................................................................................................................................................................CTTTTCTTGCAGTT--TTCGGTCGGAC-C.....................................2611.001100000
...............................................................................................................................................................................................................................................................................................GTT--TTCGGTCGGAC-CATTA.................................1911.001001000
...................TT-TGCTACTGT--------TGCAATCGC---ATCGA..............................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................CATAACTA------CT-AGCCATGTCTC.....2111.001001000
............................................................................................................................................................................................................................................................................................................GAC-CATTACATAACTA------CT-AGC.............2111.001100000
droWil2
GCTGCTTTAAGGTTATAT-TT-TGCATCGGT--------TGCAAGAG-------AATTT--GGTAATTGTTGG--AAATTTGTTAA-ATA-A-TTC-----------AAGAAATA-GTA-----------------------------AATTTTTGCTGG--A---GTTGACCGAC----------------------TTT-CG-GCAAA------------CAGTTGAAGCCCTTGC-A-AA---------TAA-----GTGTCTAATTTAACGTTTCCCATTGCAGTT--GTCGTTTGGACCAATTACATAACTTT--------AACCATGTCCCAGGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................TACATAACTTT--------AACCATGTCCCAGGCT2714.00404000
..........GGTTATAT-TT-TGCATCGGT--------TGCAA..........................................................................................................................................................................................................................................................................................................2414.00402110
.........................ATCGGT--------TGCAAGAG-------AATTT--GT.......................................................................................................................................................................................................................................................................................2114.00400130
...............................................................................................................................................................................................................................................................................................GTT--GTCGTTTGGACCAATT..................................1913.00330000
....................................................................................................................................................................................................................................................................................................................ACATAACTTT--------AACCATGTCCCAGGC.2512.00202000
..............ATAT-TT-TGCATCGGT--------TGC............................................................................................................................................................................................................................................................................................................1812.00200020
...................TT-TGCATCGGT--------TGCAAGA........................................................................................................................................................................................................................................................................................................1812.00220000
......................................................................................................................................................................................................................................................................................................................ATAACTTT--------AACCATGTCCCAG...2112.00210010
.................................................................................................................................................................................................................................................................................................T--GTCGTTTGGACCAATTACATAACTT.........................2611.00101000
.........................................................................................................................................................................................................................................................................................................TTGGACCAATTACATAACTTT--------AACCATG.........2811.00101000
.............TATAT-TT-TGCATCGGT--------TGCAA..........................................................................................................................................................................................................................................................................................................2111.00100010
...................................................................................................................................................................................................................................................................................................................TACATAACTTT--------AACCATGTCC......2111.00101000
...............TAT-TT-TGCATCGGT--------TGCAAGA........................................................................................................................................................................................................................................................................................................2111.00100100
............TTATAT-TT-TGCATCGGT--------TGCA...........................................................................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................................................CTTT--------AACCATGTCCCAGG..1811.00100010
.CTGCTTTAAGGTTATAT-TT-TGC.............................................................................................................................................................................................................................................................................................................................2211.00101000
.....................................................................................................................................................................................................................................................................................................................CATAACTTT--------AACCATGTCCCAGGCT2511.00110000
................................................................................................................ATA-GTA-----------------------------AATTTTTGCTGG--A---GTTGACCG........................................................................................................................................................................2711.00110000
...............................................................................................................................................................................................................................................................................................GTT--GTCGTTTGGACCAATTACA...............................2211.00101000
..........GGTTATAT-TT-TGCATCGGT--------...............................................................................................................................................................................................................................................................................................................1911.00101000
......................................................................................................................................................................................................................................................................................................CGTTTGGACCAATTACATAAC...........................2111.00100001
........................CATCGGT--------TGCAAGAG-------AATTT--GT.......................................................................................................................................................................................................................................................................................2211.00101000
....CTTTAAGGTTATAT-TT-TGCATC..........................................................................................................................................................................................................................................................................................................................2211.00100010
.....TTTAAGGTTATAT-TT-TGCATCGGT--------...............................................................................................................................................................................................................................................................................................................2411.00110000
...................................................................................................................................................................................................................................................................................................................TACATAACTTT--------AACCATGTCCCAG...2411.00100010
.............................................AG-------AATTT--GGTAATTGTTG..............................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................GTTTGGACCAATTACATAACTTT--------................2311.00110000
...................................................................................................................................................................................................................................................................................................................TACATAACTTT--------AACCATGTCCCAGGC.2611.00101000
..................................................................................................................................................................................................................................................................................................................TTACATAACTTT--------AACCATGTCCCAGGC.2711.00101000
..............ATAT-TT-TGCATCGGT--------TGCAA..........................................................................................................................................................................................................................................................................................................2011.00100010
..........................................................................................................................................................................................................................................................................................................TGGACCAATTACATAACTTT--------AACCATG.........2711.00101000
......................................................................................................................................................................................................................................................................................................CGTTTGGACCAATTACATAACTTT--------AACC............2811.00100010
......TTAAGGTTATAT-TT-TGCATCGGT--------T..............................................................................................................................................................................................................................................................................................................2411.00100010
.............TATAT-TT-TGCATCGGT--------TGC............................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................TTTTGCTGG--A---GTTGACCGAC----------------------T...............................................................................................................................................2111.00100001
.......................................................ATTT--GGTAATTGTTGG--AAATT......................................................................................................................................................................................................................................................................2111.00100010
........................................................................................................................................................TTTGCTGG--A---GTTGACCGAC----------------------TTT-CG-GC.......................................................................................................................................2611.00100010
GCTGCTTTAAGGTTATAT-TT-TG..............................................................................................................................................................................................................................................................................................................................2211.00100010
............TTATAT-TT-TGCATCGGT--------T..............................................................................................................................................................................................................................................................................................................1811.00100010
................................................................................................................................................................................................................................................................................................................AATTACATAACTTT--------AACCAT..........2011.00100010
.........................ATCGGT--------TGCAAGAG-------AATTT--GGTAAT...................................................................................................................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................CTTT--------AACCATGTCCCAGGCT2011.00100100
...............................................................................................................................................................................................................................................................................................................CAATTACATAACTTT--------AACCATGTCCCA....2711.00101000
.....TTTAAGGTTATAT-TT-TGCA............................................................................................................................................................................................................................................................................................................................1911.00101000
.........................ATCGGT--------TGCAAGAG-------AATT............................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................GTTTGGACCAATTACATAAC...........................2011.00100010
........................................................................................................................................................................................................................................................................................................TTTGGACCAATTACATAACTTT--------AACCAC..........2811.00110000
.......................................................................................................................................................................................................................................................................................................................TAACTTT--------AACCATGTCCCAGG..2111.00101000
....CTTTAAGGTTATAT-TT-TGCATCGGT--------T..............................................................................................................................................................................................................................................................................................................2611.00100010
.............TATAT-TT-TGCATCGGT--------TG.............................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
GCTGCTTTAAGGTTATAC-TA-CTAT--TGTAGTGGACTTGAATTCGTAAAATTTA-T--TGGTAAATAT-GC--GATA----------------------TAAAACAATATATTGGTTTAT-TTATTTCG--CACAAACG-A------AA-----TGA---G----------------------TTG-----------C--CAGT-TCG--------------------------------CATTTGTATTTAACTCAGACAACTGACGCATTCCTTTTCCTTGCAGAT--ATTAGTCTGCT-CATTACATAACTA-----ACC-AGCTATGTCTCAGGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............ATAC-TA-CTAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................27145.00450058010000000071017300010000001000000000000000000000000000000010
..............ATAC-TA-CTAT--TGTAGTGGACTTGA............................................................................................................................................................................................................................................................................................................24116.0016001000000000001108200030000000000000000000000000000000000000000
......................CTAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................21111.0011001200000000000104200000000000000000000000000000000000000001000
........................AT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................1918.008000000000000011100120000000000000000000000000000000000000000110
.......................TAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................2018.008001100000000000003100100000000000000000000000000000000000000100
....................A-CTAT--TGTAGTGGACTTGAA...........................................................................................................................................................................................................................................................................................................2018.008013000000000000000010110000000000000000000000000000000000000100
..............ATAC-TA-CTAT--TGTAGTGGACT...............................................................................................................................................................................................................................................................................................................2117.007001200000000001102000000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAATTCG.......................................................................................................................................................................................................................................................................................................2117.007001000000010000004100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GTCTGCT-CATTACATAACTA-----ACC-AGCT............2717.007003000000000001000000020000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GTCTGCT-CATTACATAACTA-----ACC-................2317.007002100000000001000200010000000000000000000000000000000000000000
..............ATAC-TA-CTAT--TGTAGTGGAC................................................................................................................................................................................................................................................................................................................2016.006000000000000000004100000000000000000000000000000000000000010000
......................CTAT--TGTAGTGGACTTGA............................................................................................................................................................................................................................................................................................................1815.005000100000000001001000100000000000000000000000000000000000001000
........................AT--TGTAGTGGACTTGAATTCGTAAA...................................................................................................................................................................................................................................................................................................2515.005020000000000000102000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GTCTGCT-CATTACATAACT..........................1914.004011000000000000002000000000000000000000000000000000000000000000
.............TATAC-TA-CTAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................2814.004002100000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AACTA-----ACC-AGCTATGTCTCAGGCT2414.004003000000000000000010000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAATTCGTA.....................................................................................................................................................................................................................................................................................................2614.004000000000000000001200000000000000000000000000000000000000000100
.............TATAC-TA-CTAT--TGTAGTGGACT...............................................................................................................................................................................................................................................................................................................2214.004000100000000000001110000000000000000000000000000000000000000000
......................CTAT--TGTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................2414.004000200000000000001000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATTAGTCTGCT-CATTACATAACT..........................2314.004001100000000000000100010000000000000000000000000000000000000000
..............ATAC-TA-CTAT--TGTAGTGGA.................................................................................................................................................................................................................................................................................................................1913.003000000000000000003000000000000000000000000000000000000000000000
.........................T--TGTAGTGGACTTGAATTCGTAAA...................................................................................................................................................................................................................................................................................................2413.003030000000000000000000000000000000000000000000000000000000000000
......................CTAT--TGTAGTGGACTTGAAT..........................................................................................................................................................................................................................................................................................................2013.003000000000000000002000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................GTCTGCT-CATTACATAACTA-----ACC-AGC.............2613.003001000000000000001010000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGA............................................................................................................................................................................................................................................................................................................1913.003003000000000000000000000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAATTCGTAA....................................................................................................................................................................................................................................................................................................2413.003000000000000000002000000000000000000000000000000000000000000010
........................AT--TGTAGTGGACTTGAATTCGTA.....................................................................................................................................................................................................................................................................................................2313.003000000000000000001000000000000000000000000000000000000000001100
.................................................................................................................................................................................................................................................................................................................ATTACATAACTA-----ACC-AGCTATGT........2312.002000000000000000002000000000000000000000000000000000000000000000
.......................TAT--TGTAGTGGACTTGAATTCGTAAA...................................................................................................................................................................................................................................................................................................2612.002010000000000000001000000000000000000000000000000000000000000000
...............TAC-TA-CTAT--TGTAGTGGACT...............................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAAT..........................................................................................................................................................................................................................................................................................................1812.002000000000000000002000000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAATTCG.......................................................................................................................................................................................................................................................................................................2412.002001000000000000000000100000000000000000000000000000000000000000
.........................T--TGTAGTGGACTTGAATTCGTA.....................................................................................................................................................................................................................................................................................................2212.002001000000000000000000010000000000000000000000000000000000000000
......................CTAT--TGTAGTGGACTTGAA...........................................................................................................................................................................................................................................................................................................1912.002000000000000000001000000000000000000000000000000000000000001000
....................A-CTAT--TGTAGTGGACTTGAATTCGTAAA...................................................................................................................................................................................................................................................................................................2812.002000000000000000001010000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAATTCGTAAAAT.................................................................................................................................................................................................................................................................................................2712.002000000000000000000000100000000000000000000000000000000000001000
............................TGTAGTGGACTTGAATTCGTA.....................................................................................................................................................................................................................................................................................................2112.002000000000000000001000000000000000000000000000000000000000000100
...........GTTATAC-TA-CTAT--TGTAGTGGACT...............................................................................................................................................................................................................................................................................................................2412.002001000000000000001000000000000000000000000000000000000000000000
.................C-TA-CTAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................2412.002000100000000000000000000000000000000000000000000000000000100000
...................TA-CTAT--TGTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................2612.002001100000000000000000000000000000000000000000000000000000000000
...................TA-CTAT--TGTAGTGGACTTGAA...........................................................................................................................................................................................................................................................................................................2112.002000000000000000000100000000000000000000000000000000000000001000
.......................TAT--TGTAGTGGACTTGAAT..........................................................................................................................................................................................................................................................................................................1912.002000000000000000001000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................T-CATTACATAACTA-----ACC-AGCTAT..........2311.001000000000000000000100000000000000000000000000000000000000000000
.......................TAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................CATTACATAACTA-----ACC-AGCTATGT........2411.001000100000000000000000000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAAA..........................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTA-----ACC-AGCTA...........2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ATTACATAACTA-----ACC-AGCT............1911.001000000000000000000001000000000000000000000000000000000000000000
......................CTAT--TGTAGTGGACTTGAATTCGTAAA...................................................................................................................................................................................................................................................................................................2711.001000000000000000000010000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAATTCGTAA....................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..............ATAC-TA-CTAT--TGTAGTGGACTTGAAT..........................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...............................AGTGGACTTGAATTCGTAAA...................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................AT--ATTAGTCTGCT-CATTACATAACTA-----ACC-................2911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CTA-----ACC-AGCTATGTCTCAGGCT2211.001010000000000000000000000000000000000000000000000000000000000000
................................GTGGACTTGAATTCGTAAAAT.................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........GTTATAC-TA-CTAT--TGTAGTGGACTTGA............................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
.......................TAT--TGTAGTGGACTTGAATTCGTAA....................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGTCTGCT-CATTACATAACTA-----ACC-................2411.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GACAACTGACGCATTCCTTTTCC............................................................2311.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GT-TCG--------------------------------CATTTGTATTTAACTCAG..................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TTACATAACTA-----ACC-AGCTAT..........2011.001001000000000000000000000000000000000000000000000000000000000000
..............ATAC-TA-CTAT--TGTAGTGGACTTG.............................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...................TA-CTAT--TGTAGTGGACT...............................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000010000
................................GTGGACTTGAATTCGTAAAATT................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................GAT--ATTAGTCTGCT-CATTACAT..............................2211.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATTAGTCTGCT-CATTACAT..............................1911.001000000000000000000000000000000000000000000000000000000000001000
..............ATAC-TA-CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................AC-TA-CTAT--TGTAGTGGACTTGAAT..........................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................T--TGTAGTGGACTTGAATTCGTAAAATT................................................................................................................................................................................................................................................................................................2711.001000000000000000000010000000000000000000000000000000000000000000
...............................AGTGGACTTGAATTCGTAAAAT.................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...............TAC-TA-CTAT--TGTAGTGGACTTGA............................................................................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
.........................T--TGTAGTGGACTTGAATTCGTAAC...................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
.............TATAC-TA-CTAT--TGTAGTGGAC................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................................GTCTGCT-CATTACATAACTA-----ACC-A...............2411.001000000000000000000000000000000010000000000000000000000000000000
.........................T--TGTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
........................AT--TGTAGTGGACTTGAATTCGTAAAA..................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAATTCGTAAAATT................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TTACATAACTA-----ACC-AGCTATGTC.......2311.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................T--ATTAGTCTGCT-CAT...................................1511.001000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................TA-----ACC-AGCTATGTCTCAGGCT2111.001001000000000000000000000000000000000000000000000000000000000000
........AAGGTTATAC-TA-CTAT--TGTAGTG...................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGTCTGCT-CATTACATAACTA-----AC..................2311.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGTCTGCT-CATTACATAACTA-----ACC-AGCT............2811.001000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTAGTCTGCT-CATTACATAACT..........................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................AGTGGACTTGAATTCGTA.....................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.............TATAC-TA-CTAT--TGTAGTGGA.................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.............................GTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.......................................TGAATTCGTAAAATTTA-T--T.........................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
...................TA-CTAT--TGTAGTGGACTTGA............................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACT...............................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000100000
...............TAC-TA-CTAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GAT--ATTAGTCTGCT-CATTA.................................1911.001000000000000000100000000000000000000000000000000000000000000000
..............ATAC-TA-CTAT--TGTAGTGGACTTGAA...........................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................TAT--TGTAGTGGACTTGAATTCG.......................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................AC-TA-CTAT--TGTAGTGGACTTGAATTCGTAA....................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000010000000
.......................TAT--TGTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CTGCT-CATTACATAACTA-----ACC-AGCT............2511.001000000000000000100000000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAAT..........................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........GTTATAC-TA-CTAT--TGTAGTGGA.................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...............TAC-TA-CTAT--TGTAGTGGACTTG.............................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTG.............................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
........................AT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
........................AT--TGTAGTGGACTTGAATTCGC......................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..............ATAC-TA-CTAT--TGTAGTGGACC...............................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATTAGTCTGCT-CATTACATA.............................2011.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACATAACTA-----ACC-AGCTATGT........2011.001000000000000000001000000000000000000000000000000000000000000000
.............................GTAGTGGACTTGAATTCGTAA....................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................T--ATTAGTCTGCT-CATTACATAACTA-----....................2511.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AACTA-----ACC-AGCTATGTCTCAG...2111.001001000000000000000000000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAATTCGTAAAA..................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TAGTCTGCT-CATTACATAACT..........................2111.001000000000000000000100000000000000000000000000000000000000000000
...................TA-CTAT--TGTAGTGGACTTGAATTCG.......................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.........AGGTTATAC-TA-CTAT--TGTAGTGGA.................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
................AC-TA-CTAT--TGTAGTGGACTTGAATTCGT......................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAACTA-----ACC-AGCTATGTCTCA....2211.001000000000000000000010000000000000000000000000000000000000000000
....................A-CTAT--TGTAGTGGACTTGAATT.........................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................A-----ACC-AGCTATGTCTCAGGCT2011.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTAGTCTGCT-CATTACATAAC...........................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................T--TGTAGTGGACTTGAATTCGTAAAAT.................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
............................TGTAGTGGACTTGAATTCGTAAAATT................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AGT-TCG--------------------------------CATTTGTATTTAA.......................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CT-CATTACATAACTA-----ACC-AGC.............2111.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
GCTGCTTTAAGGTTATAC-TA-CTAT--TGTAGTGGACTTGAATTCGCATAATTA--T--TGGTAAATAT-AATTTTATTTAGTAG-ATT------------------------------------------------------------------CTGTGATTTATT--ACTTATCGTATGCATTT------------------TG-TACAACTTAATATATAGTTG------GTA-TCAAA--------------CAAAGAACTGACACATTCGTTTTCCTTGCAGCT--ATTGGTCTTCA-CATTACATAACTA-----ACC-AGCTATGTCTCAGGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................CTAT--TGTAGTGGACTTGAATTCGC......................................................................................................................................................................................................................................................................................................2422.505400010
........................................................................................................................................................................................................................................................................................................................AACTA-----ACC-AGCTATGTCTCAGGCT2411.001100000
..........................................................................................................................................................................................................................................................................................................CTTCA-CATTACATAACTA-----ACC-AG..............2311.001100000
............................................................................................................................................................................................................................................................................................................TCA-CATTACATAACTA-----ACC-AGCTATGTC.......2811.001000010
...............................................................................................................................................................................................................................................................................................GCT--ATTGGTCTTCA-CATTACA...............................2111.001100000
........................AT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2021.002000002
...........................................................................................................................................................................................................................................................................................................TTCA-CATTACATAACTA-----ACC-AG..............2211.001000010
......................................................................................................................................................................................................................................................................................................................ATAACTA-----ACC-AGCTATGTCTCAGGCT2611.001100000
........................AT--TGTAGTGGACTTGAATTCGC......................................................................................................................................................................................................................................................................................................2221.002200000
............................................................................................................................................................................................................................................................................................................................A-----ACC-AGCTATGTCTCAGGC.1911.001100000
........................................................................................................................................................................................................................................................................................................................AACTA-----ACC-AGCTATGTCTCAGG..2211.001100000
......................CTAT--TGTAGTGGACTTGAATTCGCAT....................................................................................................................................................................................................................................................................................................2620.501100000
..............ATAC-TA-CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2820.501100000
............................TGTAGTGGACTTGAATTCGCATAATTA--.............................................................................................................................................................................................................................................................................................2720.501100000
............TTATAC-TA-CTAT--TGTAGTGG..................................................................................................................................................................................................................................................................................................................2020.501100000
.......................TAT--TGTAGTGGACTTGAATTCGC......................................................................................................................................................................................................................................................................................................2320.501100000
......................CTAT--TGTAGTGGACTTGAA...........................................................................................................................................................................................................................................................................................................1920.501100000
...................TA-CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2420.501100000
................AC-TA-CTAT--TGTAGTGGACTTGAATTCGC......................................................................................................................................................................................................................................................................................................2820.501100000
......................CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2220.501100000
....................A-CTAT--TGTAGTGGACTTGAATTCGCA.....................................................................................................................................................................................................................................................................................................2620.501000001
.......................TAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2120.501100000
.................C-TA-CTAT--TGTAGTGGACTTGAATTCGC......................................................................................................................................................................................................................................................................................................2720.501100000
......TTAAGGTTATAC-TA-CTAT--TGTAGT....................................................................................................................................................................................................................................................................................................................2420.501100000
...............TAC-TA-CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2720.501100000
....CTTTAAGGTTATAC-TA-CTAT--TGT.......................................................................................................................................................................................................................................................................................................................2320.501000010
...................TA-CTAT--TGTAGTGGACTTGAATTCG.......................................................................................................................................................................................................................................................................................................2520.501100000
.......................TAT--TGTAGTGGACTTGAA...........................................................................................................................................................................................................................................................................................................1820.501100000
........................AT--TGTAGTGGACTTGAATTCGCATAAT.................................................................................................................................................................................................................................................................................................2720.501000100
.............TATAC-TA-CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2920.501100000
........................AT--TGTAGTGGACTTGAATTCGCA.....................................................................................................................................................................................................................................................................................................2320.501000001
....................A-CTAT--TGTAGTGGACTTGAATTC........................................................................................................................................................................................................................................................................................................2320.501000010
droGri2
GCTGCTTTAAGGTTATAC-TA-CGAT--TGTAGTGGACATAAAATCGCATAACT-TTT--TGGTAAATAT-AT--TATCTTAATATAA-AATATAG--AT------------------A---------------------------------------GTGCCGCAGC--ACAGATTTTAGGCGCTT------------CA-CAGTG-CA--------------------------------CAAATATAATT-AGCCGGTCAACTGACACGAGTGTTTTTCTTGCAGCT--ATTGCTCGGTA-CATTACATAACTA-----ACC-AGATATGTCTCAGGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................CTA-----ACC-AGATATGTCTCAGGCT2211.00110

Generated: 05/19/2015 at 03:02 PM