ID:

dsi_30297

 Coordinate:

2l:20082817-20082966 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.0 -11.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAATACATTCCACAGCCCTAAGTAACAAGTTATATGAAGAACACGACAGGCTCGCGACGTGGAGGCTTCGAAATATTGTAGAAAAGTATAAATACTTGGCCACCGGAAACGCCGAGTTCTCCCAGTGGATTGAAAAAATAAACAACGTTGCTGCCCAAAAAAGCTTAGAAGCAAGGTTGGACACAGAAAGTGAATTCAAACAATACGATAGGCAACGCCAAATGCTTGAAGATAACATTACTCAGCGCT
***************************************************************....(((((..(((((.(((...........(((((((..........))))))))))..)))))..)))))...............**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
...............................................................AGGCTTCGAAATATTGTAGAAAAGTA................................................................................................................................................................. 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................TACGATAGGCAACGCCAAATGCTTGA.................... 26 0 2 1.50 3 0 0 0 1 1 0 1 0 0
............................................................TGGAGGCTTCGAAATATTGTAGAAAAGTA................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0
............................................................................................................................AGTGGATTGAAAAAATAAACAACGTT.................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................TTCGAAATGTTGTAGAAAAGTATAAA............................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................TATTGTAGAAAAGTATAAATACTTGGC..................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................ATATGAAGAACACGACAGGCT..................................................................................................................................................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0
...........................................................................ATTGTAGAAAAGTATAAATACTTGGC..................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................TGACGTGGAGGCTTCGAAATATTGTAGAA...................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................ACGTGGAGGCTTCGAAATAT............................................................................................................................................................................. 20 0 3 0.67 2 0 0 0 0 0 2 0 0 0
................................................................................................................................................AACGTCGCTGCCCAAAAAG....................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................TAACAAGTTATATGAAGAACACGACAGGC...................................................................................................................................................................................................... 29 0 2 0.50 1 0 0 0 0 1 0 0 0 0
......CATTCCACAGCCCTAAGTAACAAGTTA......................................................................................................................................................................................................................... 27 0 2 0.50 1 0 0 0 0 0 0 0 1 0
............................AGTTATATGAGGAACACGACAGGCT..................................................................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGAAGATAACATTACTCAGCGCT 23 0 2 0.50 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................TGAAGATAACATTATTCAGCGCT 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................ACAAGTTATATGAGGAACACGACAGGC...................................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
....TACATTCCACAGCCCTAAGTAACAA............................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TACGATAGGCAAAGCCAAATGCTTGA.................... 26 1 2 0.50 1 0 0 0 0 0 0 1 0 0
................CCCTAAGTAACAAGTTATATGAAGAACA.............................................................................................................................................................................................................. 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................................................................TAAATACTTGGCCACCGGAAAAGGAG....................................................................................................................................... 26 3 2 0.50 1 0 0 0 1 0 0 0 0 0
...........CACAGCCCTAAGTAACAAGTTATATGA.................................................................................................................................................................................................................... 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0
...................TAAGTAACAAGTTATATGAAGAACACGACA......................................................................................................................................................................................................... 30 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.......................................................................................TATAAATACTTGGCCACCGGA.............................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0
...................................................................................AAAGTATAAGTACTTGG...................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................ATAAACGACGTTGCT................................................................................................. 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................CCCGTGGATTTAAATAATA............................................................................................................. 19 3 20 0.10 2 0 1 0 0 0 0 0 0 1
..................................AAGAAGAACATGAGAGGCTC.................................................................................................................................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGAGTTCAACCAATACG.......................................... 17 2 13 0.08 1 0 0 0 1 0 0 0 0 0
...................................TGAAGAACACCACAGGTGC.................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0
.......................................................AGCCGTGGAGGCTTCGGAA................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGTTATGTAAGGTGTCGGGATTCATTGTTCAATATACTTCTTGTGCTGTCCGAGCGCTGCACCTCCGAAGCTTTATAACATCTTTTCATATTTATGAACCGGTGGCCTTTGCGGCTCAAGAGGGTCACCTAACTTTTTTATTTGTTGCAACGACGGGTTTTTTCGAATCTTCGTTCCAACCTGTGTCTTTCACTTAAGTTTGTTATGCTATCCGTTGCGGTTTACGAACTTCTATTGTAATGAGTCGCGA
****************************************************************************************************....(((((..(((((.(((...........(((((((..........))))))))))..)))))..)))))...............*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 M023
head
.............................................................................................................................................................................................TCACTTAAGTTTGTTATGCTATCCGT................................... 26 0 1 26.00 26 6 9 7 4 0 0 0 0
.............................................................................................................................................................................................TCACTTAAGTTTGTTATGCTATCCG.................................... 25 0 1 22.00 22 6 1 9 6 0 0 0 0
............................................................................................................................................................................................TTCACTTAAGTTTGTTATGCTATCCGT................................... 27 0 1 7.00 7 4 1 2 0 0 0 0 0
...................................................................................................................................................................................................AAGTTTGTTATGCTATCCGTTGCGGTTT........................... 28 0 1 5.00 5 0 2 1 1 1 0 0 0
............................................................................................................TTGCGGCTCAAGAGGGTCACCTAACTT................................................................................................................... 27 0 1 5.00 5 1 1 2 1 0 0 0 0
.............................................................................................................................................................................................TCACTTAAGTTTGTTATGCTATCCGTT.................................. 27 0 1 5.00 5 4 0 1 0 0 0 0 0
............................................................................................................................................................................................TTCACTTAAGTTTGTTATGCTATCCG.................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCACTTAAGTTTGTTATGCTATCCGTTG................................. 28 0 1 4.00 4 1 2 1 0 0 0 0 0
...................................................................................................CGGTGGCCTTTGCGGCTCAAGAGGGT............................................................................................................................. 26 0 1 4.00 4 2 0 1 0 1 0 0 0
............................................................................................................TTGCGGCTCAAGAGGGTCACCTAACT.................................................................................................................... 26 0 1 4.00 4 1 2 1 0 0 0 0 0
...............................................................................................................CGGCTCAAGAGGGTCACCTAACTTTTT................................................................................................................ 27 0 1 3.00 3 1 2 0 0 0 0 0 0
..................................................................................................................................................................................................TAAGTTTGTTATGCTATCCGTTGCGGT............................. 27 0 1 3.00 3 0 3 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTTTGTTATGCTATCCGTTGCGGTT............................ 27 0 1 3.00 3 0 1 2 0 0 0 0 0
.............................................................................................................TGCGGCTCAAGAGGGTCACCTAACTT................................................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0 0 0
......................................................................................................................AGAGGGTCACCTAACTTTTTTATTTGT......................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................CACTTAAGTTTGTTATGCTATCCGT................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0
................................................................................................................................................................TTTCGAATCTTCGTTCCAACCTGTGT................................................................ 26 0 1 2.00 2 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................CACTTAAGTTTGTTATGCTATCCGTTG................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................CACTTAAGTTTGTTATGCTATCCG.................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................GTGGCCTTTGCGGCTCAAGAGGGT............................................................................................................................. 24 0 1 2.00 2 0 0 2 0 0 0 0 0
......................................................CGCTGCACCTCCGAAGCTTTATAACAT......................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0
............................................................................................................TTGCGGCTCAAGAGGGTCACCTAA...................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................................................TTGTTGCAACGACGGGTTTTTTCGAAT.................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................ACTTAAGTTTGTTATGCTATCCGT................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCACTTAAGTTTGTTATGCTATCCGTTGC................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................GGTGGCCTTTGCGGCTCAAGAGGGT............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................TTGTTGCAACGACGGGTTTTT........................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................CGGCTCAAGAGTGTCACCTAACTTT.................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................CTCAAGAGGGTCACCTAACTTTTTT............................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................................................................GTTGCAACGACGGGTTTTTT....................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................TGCACCTCCGAAGCTTTATAACATCTT...................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................CGGCTCAAGAGGGTCACCTAACTTT.................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTCACTTAAGTTTGTTATGCTAT....................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................TGGCCTTTGCGGCTCAAGAGGGT............................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................TTTCGAATCTTCGTTCCAACCTGTGTCT.............................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................CGAAGCTTTATAACATCTTTTCATAT............................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTTTGTTATGCTATCCGTTGCGGT............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AAGAGGGTCACCTAACTTTTTTATTTGT......................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................GTTGCAACGACGGGTTTTTTCGAAT.................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................GCGGCTCAAGAGGGTCACCTAACT.................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................TTGTTGCAACGACGGGT............................................................................................ 17 0 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................CGAATCTTCGTTCCAACCTGTGTCTT............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TAAGTTTGTTATGCTATCCGTTGCGGTTT........................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................TTGCGGCTCAAGAGGGTCACCTAAC..................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................TCAAGAGGGTCACCTAACTTTTTTAT............................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTAAGTTTGTTATTCTATCCGTTGCGGT............................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTTTGTTATGCTATCCGT................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................TCATTATTCAATATACTCCTTGTGCTGT......................................................................................................................................................................................................... 28 2 2 1.00 2 0 2 0 0 0 0 0 0
............................................................................................................................................................................................TTCACTTAAGTTTGTTATGCTATCCGTT.................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTCACTTAAGTTTGTTATGCTATCCGTTGC................................ 30 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................AAGTTTGTTATGCTATCCGTT.................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......GTAAGGTGTCGGGATTCATTGTTCA........................................................................................................................................................................................................................... 25 0 2 1.00 2 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................TTAAGTTTGTTATGCTATCCGTTGCGGT............................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................CTTTGCGGCTCAAGAGGGTCACCTAA...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTCACTTAAGTTTGTTATGCTATCCGT................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................TTTGTTGCAACGACGGGTTTTTT....................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
......GTAAGGTGTCGGGATTCATTATTCAAT......................................................................................................................................................................................................................... 27 1 2 1.00 2 1 1 0 0 0 0 0 0
.......................................................................................................GGCCTTTGCGGCTCAAGAGGGTCACCT........................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................TCACTTGAGTTTGTTATGCTATCCGTT.................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
....ATGTAAGGTGTCGGGATTCATTATTCAAT......................................................................................................................................................................................................................... 29 1 2 0.50 1 0 0 1 0 0 0 0 0
........AAGGTGTCGGGATTCATTATTCAATAT....................................................................................................................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTACGAACTTCTATTGTAATGAGT..... 24 0 2 0.50 1 0 0 0 0 1 0 0 0
........AAGGTGTCGGGATTCATTATTCAAT......................................................................................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
...................................ACTGCTTGTGCTGTCC....................................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0
.................................ATACTCCTTGTGCTGT......................................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0
TGTTATGTAAGGTGTCGGGATTCATT................................................................................................................................................................................................................................ 26 0 2 0.50 1 0 1 0 0 0 0 0 0
.....TGTAAGGTGTCGGGATTCATTATTCAAT......................................................................................................................................................................................................................... 28 1 2 0.50 1 0 1 0 0 0 0 0 0
..TTATGTAAGGTGTCGGGATTC................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATCCGTTGCGGTTTACGAACTTCTAT............... 26 0 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TGCTATCCGTTGCGGTTTACGAA...................... 23 0 2 0.50 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................CGTTGCGGTTTACGAACTTCTATT.............. 24 0 2 0.50 1 1 0 0 0 0 0 0 0
....ATGTAGGGTGTCGGTATACAT................................................................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 1 0
.......CAACTTGTCGGGATTCATT................................................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 1
...................................ACTTCGTGGGCTGTCC....................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20082767-20083016 + dsi_30297 ACAATACATTCCACA---GCCCTAAGTAACA------AGTTATATGAAGAACACGACAGGCTCGCGACGTGGAGGCTTCGAAATATTGTAGAAAAGTATAAATACTTGGCCACCGGAAACGCCGAGTTCTCCCAGTGGATTGAAAAAATAAACAACGTTGCTGCCCAAAAAAG--------CTT---------------AGAAGCAAGGTTGGACACAGAAAGTGAATTCAAACAATACGATAGGCAACGCCAAATGCTTGAAGATAACATTACTCA---GCGCT
droSec2 scaffold_18:514701-514950 + ACAACACATTCCACA---GCCCTAAGTAACA------AGTTATATGAAGAACACGACAGGCTGGTGACGTGGAGGCTTCGAAATATTGTAGACAAGTATAAATACTTGGCCACCGGAAACTCCGAGTTCTCCCAGTGGATTGAAAAAATAAACAACGTGGCTGCCCAAAGAAG--------CTT---------------AGAAGCAAGGTTGGACACAGAAAGTGAATTCAAACAATACGATAAGCAACGCCAATTGCTTGAAGATAACATTACTCA---GCGCT
dm3 chr2L:20634663-20634912 + ACAATACATTCCACA---GCCCTTAGTAGTA------AGGAATATGATGAACACGAAAGGCTGGTGACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGGAAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCCGAAGTAA--------CCT---------------TGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATACGATGAACAACGCCAATTGCTTGAAGATAACATTACTCA---GCGCT
droEre2 scaffold_4845:3819281-3819529 - ATAATATA-TGCACA---GCCCTAAGTAGTA------AGGACTTTCAAGAGGCGGACAGGCTGGTGACGTGGAGGCTTCGAAATATTGTGAGCAAGTATAAAGTATTGGCCATCGGAAACGCCGAGTTCTCCCGGTGGATAGAGAAGATAAACAATGTTGCCGCCCAGAGTAG--------CTT---------------TGAAGCAAGGATTATGGCAGAATCTGATTTCAAGGGCTACGATAAGACTCGCCAAATGCTTGAAGATGAAATTACCGA---ACGCT
droYak3 2R:6982557-6982806 + ACAATATATTGCTCA---GCCCTGAGTACTA------AGGAGTATGAAGAAGCAGACAGGATGGTGACGTGGAGACTTCAAAATATTGTGAAGAAGTATAAAAACTTGGCCACCGGAAACGCCGAGTTCTCCCAGTGGATAGAAAAGATAAACAATATTGCTGTCCGGAGTGA--------CTT---------------TAGAGTAAAGATGGAAATGGAAGGTGAATTTAACGTCTACGATCAGATGCGCCAATCATATGAAGATAAAATTACTGA---ACGCT
droEug1 scf7180000409767:659174-659421 - TCATATCCCTTTTTA---GCCCTATGTAATGCTTCTATAAAATATGTAGAAGAAAA------TGAGAGGAAGTTACTACAGAATATTGTCAATAAGTATAAGATCTTGGCTACTGGAAAAGTTGAGTTCTCGCAGTGAATTGAAAATGTCTACAAAACCTTACCCCTAAGCGG--------C--------------------AGTCGGGCTATTAGGAGTAGACCGATTTGATGCACACGACAAGGTACGACAGAGGCTCGAAGATCAAATGATCAAGTCGCGAC
droBia1 scf7180000302422:7453653-7453900 - AATATT--TCTCGCAGTCGCCTTAAGCAGAA------TGGATGATCTT------GCGCGTGACACTAAACGTAAACTTCAAAACTATGTAGACAAATATAGATACTTGTCCACTGGAAATGCTGAATTCGCCCAGTGGATTGAAAAACTCTACAATG---CTATCCATAGTAA--------GAGAGATGTTGTG-------T--GGAAAACGCGGTTGCGGATAAAATTCGGAGCTTACGACAAGGAACGTCAAGAACTTGAAGACCAGATTACTAC---TCGCT
droTak1 scf7180000415104:163275-163523 - ATGATATATTTCACA---GTCCTAAGTGAAAGTTCTG-ACACTCTAAAGAGGGAAA--------ACCGACGGGACCTTCAAGACATATTAAACAAGTATGGACACCTATCTAATGGAAATGCAGAATTCTCCGACTGGATTGAGAAAGTCC---AAGCTGCTATCAAAAGAGA--------T---TATA---TGAACCTTAGAGAGAAAGTGGACTTGGTGATTGAGTTTAAGCGTTACGATAGGGAACGTCAAGACCTCGAAGATAAACTTG-------GTGAT
droEle1 scf7180000491186:633058-633301 + C------AATTCACA---GCCTTATGTG------------TGTTTGAAGCGGATGATGCCGTTGTTACTCAGGAAATAAGAGATGTTGTAAATAAGTATAAACGCTTATCCACTGGAAACGCTGAATTCTCTCAGCGAATTGAAAAACTTTACTATATGATTCCCCTGCAA----------CC-AG-CCTTA-----TTTCCAGAAAAAATTCGTGCAGTGACAGAGTTTAAACACTACGACCGAGAGCGACAAAGATTGGAAGATGACATTACTGA---GCGCA
droRho1 scf7180000777920:52808-53057 + ACGACGCAATTCACA---GTCCTATGTCAAG------TTGAA------ATTCTTATCAACAATGCTAACCGGCGGATGCGAGATTATGTTGAAAAGTATAAAAACAAAGCTACTGGAAACGCTGAACTCACCAAGTGGATAGAAGACCTTTTCCATATTTACACCGATAAAGA--------C---TACGACACT----TTTC--AAAGACTTTTAAAACTACATACATTTGTGGCATACGATGAGGACCGTAAACAGCTAGAAGATAGAATTACTGA---GCGCA
droKik1 scf7180000302408:72244-72442 + ACGG------------------------------------------------------------------AGCAACTAAGGGATATTGTTGATAAATACAAGCACTTGACCTTTGGCAACTCCGAATTCTCCAATTGGATTGAACAAGTCTACTATGCCAGT-----AAAAAACCAATGGGTTT-------T-----GAAGCCGAGAAATATTATATATATCATAATTTCCGAGTATACGATGGAATACGTCAACAGTTGGAAAACCAAATAACTGA---CCGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAATACATTCCACA---GCCCTAAGTAACA------AGTTATATGAAGAACACGACAGGCTCGCGACGTGGAGGCTTCGAAATATTGTAGAAAAGTATAAATACTTGGCCACCGGAAACGCCGAGTTCTCCCAGTGGATTGAAAAAATAAACAACGTTGCTGCCCAAAAAAG--------CTT---------------AGAAGCAAGGTTGGACACAGAAAGTGAATTCAAACAATACGATAGGCAACGCCAAATGCTTGAAGATAACATTACTCA---GCGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................AGGCTTCGAAATATTGTAGAAAAGTA...........................................................................................................................................................................................2612.00200000000100010000
............................................................................................................................................................................................................................................TACGATAGGCAACGCCAAATGCTTGA.......................2621.50300000001011000000
.....................................................................TGGAGGCTTCGAAATATTGTAGAAAAGTA...........................................................................................................................................................................................2911.00100000010000000000
.....................................................................................................................................AGTGGATTGAAAAAATAAACAACGTT..............................................................................................................................2611.00101000000000000000
...................................................................................TATTGTAGAAAAGTATAAATACTTGGC...............................................................................................................................................................................2711.00100000000100000000
.........................................ATATGAAGAACACGACAGGCT...............................................................................................................................................................................................................................2121.00202000000000000000
....................................................................................ATTGTAGAAAAGTATAAATACTTGGC...............................................................................................................................................................................2611.00100000000000010000
..................................................................ACGTGGAGGCTTCGAAATAT.......................................................................................................................................................................................................2030.67200000000000002000
..........................TAACA------AGTTATATGAAGAACACGACAGGC................................................................................................................................................................................................................................2920.50100000001000000000
......CATTCCACA---GCCCTAAGTAACA------AGTTA...................................................................................................................................................................................................................................................2720.50100000010000000000
...................................................................................................................................................................................................................................................................TGAAGATAACATTACTCA---GCGCT2320.50100000000001000000
....TACATTCCACA---GCCCTAAGTAACA------A.......................................................................................................................................................................................................................................................2520.50100000000000010000
...................CCCTAAGTAACA------AGTTATATGAAGAACA........................................................................................................................................................................................................................................2820.50100000000100000000
...........CACA---GCCCTAAGTAACA------AGTTATATGA..............................................................................................................................................................................................................................................2720.50100000001000000000
......................TAAGTAACA------AGTTATATGAAGAACACGACA...................................................................................................................................................................................................................................3020.50100000001000000000
................................................................................................TATAAATACTTGGCCACCGGA........................................................................................................................................................................2120.50100000000010000000
droSec2
ACAACACATTCCACA---GCCCTAAGTAACA------AGTTATATGAAGAACACGACAGGCTGGTGACGTGGAGGCTTCGAAATATTGTAGACAAGTATAAATACTTGGCCACCGGAAACTCCGAGTTCTCCCAGTGGATTGAAAAAATAAACAACGTGGCTGCCCAAAGAAG--------CTT---------------AGAAGCAAGGTTGGACACAGAAAGTGAATTCAAACAATACGATAAGCAACGCCAATTGCTTGAAGATAACATTACTCA---GCGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................CCAATTGCTTGAAGATAAC................1911.0011000
dm3
ACAATACATTCCACA---GCCCTTAGTAGTA------AGGAATATGATGAACACGAAAGGCTGGTGACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGGAAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCCGAAGTAA--------CCT---------------TGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATACGATGAACAACGCCAATTGCTTGAAGATAACATTACTCA---GCGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................TTGCTTGAAGATAACATTACT..........2124.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000002300000000000000000000000000000000000
.......................................................................................................................................................................................T---------------TGAAGTAAAGTTGGACACAG..................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000300000000000000000000000000000000000
.........................................................................................................................................................................................................AAGTAAAGTTGGACACAGAAG...............................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AA--------CCT---------------TGAAGTAAAGTTGGAC......................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000
..............................................ATGAACACGAAAGGCTGGTGA..........................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000200000000000000000000000000000000000
.........................GTAGTA------AGGAATATGATGAAC.........................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................AGTAAAGTTGGACACAGAAGG..............................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
......................................................................................................................................................AACAACGCTGCTGCCCGAAG...................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000
.............................TA------AGGAATATGATGAACACGAAAGGC................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ACAACGCCAATTGCTTGAAGA....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................AGTAA--------CCT---------------TGAAGTAAAGTTG.........................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
................................................................TGACGTGGAGACTTCGAAAT.........................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CTGCTGCCCGAAGTAA--------CCT---------------TG....................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TGCTGCCCGAAGTAA--------CCT---------------TGA...................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................AGTAGTA------AGGAATATGATG............................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000
.................................................AACACGAAAGGCTGGTGACGT.......................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
............................................TGATGAACACGAAAGGCTGGT............................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
............................................................................................................................AGTTCTCCCGGTGGATTGAA.............................................................................................................................................2022.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000100000000000000000000000000000000000
....................................................................................................AATACTTAGCCACCGGAAACG....................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..............................A------AGGAATATGATGAACACGAA....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AGGTTACTTCAAAGTATACGATGA.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCCACA---GCCCTTAGTAGTA------A.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TGGTGACGTGGAGACTTCGAA...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................TAAAGTTGGACACAGAAGGTT............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
......................................................................................................TACTTAGCCACCGGAAACGCG..................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCCGAAGTAA--------CCT---------------TGAAGTAAAGTT..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................T---------------TGAAGTAAAGTTGGACACAGAAGGT.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AACAAGTATAAATACTTAGCCA.............................................................................................................................................................................2221.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ACGTGGAGACTTCGAAATATT......................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
......................................................................................................................................................AACAACGCTGCTGCCCGA.....................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................A--------CCT---------------TGAAGTAAAGTTGGACA.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TAA--------CCT---------------TGAAGTAAAGTTGGA.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................CGATGAACAACGCCAATTGCTTG........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TATGATGAACACGAAAGGCTGG.............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................ATGAACAACGCCAATTGCTTG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................GGCTGGTGACGTGGAGACTTCGA............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................AACGCTGCTGCCCGAAGTAA--------A.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................GTTCTCCCGGTGGATTGAAA............................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................TATACGATGAACAACGCCAAT..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................AACAACGCTGCTGCCCGAAGTA.................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GATGAACAACGCCAATTGCTT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TGCTTGAAGATAACATTACTC.........2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...........................................ATGATGAACACGAAAGGCTGG.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.......................TAGTAGTA------AGGAATATGATGAAA.........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................AGTATACGATGAACAACGCCA................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................TTAGTAGTA------AGGAATATGATG............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................CTTAGTAGTA------AGGAATATGATGAACACG......................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TA------AGGAATATGATGAACACGA.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CCT---------------TGAAGTAAAGTTGGACACAGAAGG..............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AAGTATACGATGAACAACGCC.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................GTGACGTGGAGACTTCGAAAT.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GTATACGATGAACAACGCCAA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AAAGTTGGACACAGAAGGTTA...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................AAAGTATACGATGAACAACGCCA................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AGTAAAGTTGGACACAGAAGGT.............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................CAAAGTATACGATGAACAACG...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................GGCTGGTGACGTGGAGACTT...............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................GAATATGATGAACACGAAAGG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.........................................ATATGATGAACACGAAAGGCT...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CCTTAGTAGTA------AGGAATATGATGAA..........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAACAAGTATAAATACTTA.................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TTCGAAATATTGTAAACAAGT............................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................AACAAGTATAAATACTTAGC...............................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ATACTTAGCCACCGGAAG......................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GAGTTCTCCCGGTGGATTGA..............................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................CCAATTGCTTGAAGATAACAT..............2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................TAAACAAGTATAAATACTTAG................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AATACTTAGCCACCGGAAAC.....................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................TAAATACTTAGCCACCGGAAA......................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................TGGAGACTTCGAAATATTGT....................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................CTCCCGGTGGATTGAAAAAGT........................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................ACCGGAAACGCGGAGTTCTCC.........................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................CGTGGAGACTTCGAAATATTG.....................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................ACGCGGAGTTCTCCCGGTG....................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AAGATAACATTACTCA---GCGG.2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................TTAGCCACCGGAAACGCGGAG...............................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GCTTGAAGATAACATTACTC.........2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
ATAATATA-TGCACA---GCCCTAAGTAGTA------AGGACTTTCAAGAGGCGGACAGGCTGGTGACGTGGAGGCTTCGAAATATTGTGAGCAAGTATAAAGTATTGGCCATCGGAAACGCCGAGTTCTCCCGGTGGATAGAGAAGATAAACAATGTTGCCGCCCAGAGTAG--------CTT---------------TGAAGCAAGGATTATGGCAGAATCTGATTTCAAGGGCTACGATAAGACTCGCCAAATGCTTGAAGATGAAATTACCGA---ACGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................TCTCCCGGTGGATAGAGAAG..........................................................................................................................................2011.0010000100
.........................................................................................................................................................AATGTTGCCGCCCAGAGT..................................................................................................................1811.0011000000
................................................................................................TATAAAGTATTGGCCATCGGAAACGC...................................................................................................................................................................2611.0010000100
droYak3
ACAATATATTGCTCA---GCCCTGAGTACTA------AGGAGTATGAAGAAGCAGACAGGATGGTGACGTGGAGACTTCAAAATATTGTGAAGAAGTATAAAAACTTGGCCACCGGAAACGCCGAGTTCTCCCAGTGGATAGAAAAGATAAACAATATTGCTGTCCGGAGTGA--------CTT---------------TAGAGTAAAGATGGAAATGGAAGGTGAATTTAACGTCTACGATCAGATGCGCCAATCATATGAAGATAAAATTACTGA---ACGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................AATATTGCTGTCCGGAGTGA--------CTT---------------......................................................................................2311.00100000010000
................................................................................................................................................................................................................GATGGAAATGGAAGGTGAATTTAAC....................................................2511.00100000010000
droEug1
TCATATCCCTTTTTA---GCCCTATGTAATGCTTCTATAAAATATGTAGAAGAAAA------TGAGAGGAAGTTACTACAGAATATTGTCAATAAGTATAAGATCTTGGCTACTGGAAAAGTTGAGTTCTCGCAGTGAATTGAAAATGTCTACAAAACCTTACCCCTAAGCGG--------C--------------------AGTCGGGCTATTAGGAGTAGACCGATTTGATGCACACGACAAGGTACGACAGAGGCTCGAAGATCAAATGATCAAGTCGCGACSizeHit CountTotal NormTotal
No Reads
droBia1
AATATT--TCTCGCAGTCGCCTTAAGCAGAA------TGGATGATCTT------GCGCGTGACACTAAACGTAAACTTCAAAACTATGTAGACAAATATAGATACTTGTCCACTGGAAATGCTGAATTCGCCCAGTGGATTGAAAAACTCTACAATG---CTATCCATAGTAA--------GAGAGATGTTGTG-------T--GGAAAACGCGGTTGCGGATAAAATTCGGAGCTTACGACAAGGAACGTCAAGAACTTGAAGACCAGATTACTAC---TCGCTSizeHit CountTotal NormTotal
No Reads
droTak1
ATGATATATTTCACA---GTCCTAAGTGAAAGTTCTG-ACACTCTAAAGAGGGAAA--------ACCGACGGGACCTTCAAGACATATTAAACAAGTATGGACACCTATCTAATGGAAATGCAGAATTCTCCGACTGGATTGAGAAAGTCC---AAGCTGCTATCAAAAGAGA--------T---TATA---TGAACCTTAGAGAGAAAGTGGACTTGGTGATTGAGTTTAAGCGTTACGATAGGGAACGTCAAGACCTCGAAGATAAACTTG-------GTGATSizeHit CountTotal NormTotal
No Reads
droEle1
C------AATTCACA---GCCTTATGTG------------TGTTTGAAGCGGATGATGCCGTTGTTACTCAGGAAATAAGAGATGTTGTAAATAAGTATAAACGCTTATCCACTGGAAACGCTGAATTCTCTCAGCGAATTGAAAAACTTTACTATATGATTCCCCTGCAA----------CC-AG-CCTTA-----TTTCCAGAAAAAATTCGTGCAGTGACAGAGTTTAAACACTACGACCGAGAGCGACAAAGATTGGAAGATGACATTACTGA---GCGCASizeHit CountTotal NormTotal
No Reads
droRho1
ACGACGCAATTCACA---GTCCTATGTCAAG------TTGAA------ATTCTTATCAACAATGCTAACCGGCGGATGCGAGATTATGTTGAAAAGTATAAAAACAAAGCTACTGGAAACGCTGAACTCACCAAGTGGATAGAAGACCTTTTCCATATTTACACCGATAAAGA--------C---TACGACACT----TTTC--AAAGACTTTTAAAACTACATACATTTGTGGCATACGATGAGGACCGTAAACAGCTAGAAGATAGAATTACTGA---GCGCASizeHit CountTotal NormTotal
No Reads
droKik1
ACGG------------------------------------------------------------------AGCAACTAAGGGATATTGTTGATAAATACAAGCACTTGACCTTTGGCAACTCCGAATTCTCCAATTGGATTGAACAAGTCTACTATGCCAGT-----AAAAAACCAATGGGTTT-------T-----GAAGCCGAGAAATATTATATATATCATAATTTCCGAGTATACGATGGAATACGTCAACAGTTGGAAAACCAAATAACTGA---CCGCASizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 05:28 AM