ID:

dsi_30292

 Coordinate:

3r:4653572-4653721 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.8 -10.1 -9.9

Flybase annnotation

CDS [3r_4653722_4654001_+]; exon [3r_4653722_4654001_+]; intron [3r_4652050_4653721_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGAAAAGGCCCTATTAAGTTGGCTTTTTACAGAAATGTGTTTCACGGCAATAAAACTAAGATTTAGAGACCCCTGCAGTCACATGACTGCCAACTGCATTTTGTTTGTAATTGATTAGTTATTGAATGCAGGGACTTTTCAAATGGGTAGTGCCCGGAAAAAGAACACATACTAAGAACATGAACTCTACATTTGCAGGCAACGGCGTCGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAG
**********************************************************************************************************************...((...((((.((((............(((((((.............))).))))...........)))).))))))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................CGTCGTCATTCACCTGCCCT....................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGTTATTGAATGCAGGGACT................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACTAAGAACATGAACTCTACATTTG..................................................... 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CACATACTAAGAACATGAACT.............................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAACATGAACTCTACATTTGCAG.................................................. 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................ACTAAGAACATGAACTCTACATTTGCAG.................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................TATTCGACGAGGTGCTGAC. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CTAAGAACATGAACTCTACA......................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTAGTTGTTGAAGGGAGGGAC................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACGGCGTCGTCATTCAC.............................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATTTATTAGTTATTGAATGCAGGGA.................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGCAACGGCGTCGTCATTCAC.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACGGCGTCGTCATTCACCTGCCCT....................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................TCACGGCAATAAAACTAAGATTTAGAGA................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................CGCTATTCGACGAGGTGCT.... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATTCGACGAGGTGCTGAA. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................CTAAGAACATGAACTCTACATTTG..................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACTAAGAACATGAACTCTACATT....................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TGGCAACGGCGTCGTCATTCACCTGCCCT....................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................TTACAGAAATGTGTTTCGCGGCAATA.................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................CTAAGAACATGAACTCTACATTTGCAG.................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................AAGAACATGAACTCTACATTTGCAG.................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATTTGCAGGCAACGG........................................... 15 0 4 1.00 4 0 0 0 2 0 1 0 0 0 0 1
...................................................................................................................................................................................................................GTCATTCACCTGCCCTCGCT................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACGGCGTCGCCATTCACC............................. 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................CGCTATTCGACGAGGTGCTGAAG 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................ACATGACTGCGAACT......................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................ATGAATGCAGGGACTC............................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTTCTTTTCCGGGATAATTCAACCGAAAAATGTCTTTACACAAAGTGCCGTTATTTTGATTCTAAATCTCTGGGGACGTCAGTGTACTGACGGTTGACGTAAAACAAACATTAACTAATCAATAACTTACGTCCCTGAAAAGTTTACCCATCACGGGCCTTTTTCTTGTGTATGATTCTTGTACTTGAGATGTAAACGTCCGTTGCCGCAGCAGTAAGTGGACGGGAGCGATAAGCTGCTCCACGACTTC
*****************************************************...((...((((.((((............(((((((.............))).))))...........)))).))))))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
..........................................................................................................................................................GGACTTTTTTCTTGTGTTTGAT.......................................................................... 22 3 7 0.14 1 1 0 0
...........................................AGTGCCGTGATTTTG................................................................................................................................................................................................ 15 1 8 0.13 1 1 0 0
.......................................................................GGGGACGTTACTGCACTGA................................................................................................................................................................ 19 3 11 0.09 1 1 0 0
.......................................ACAGAGTGCTGTGATTTTG................................................................................................................................................................................................ 19 3 14 0.07 1 0 1 0
..................................................................................................................................................................................TAGTACTTGAGATGTAG....................................................... 17 2 14 0.07 1 0 1 0
....................................................................................................................................................................CTTGTGCTTGATTCTTG..................................................................... 17 2 17 0.06 1 0 1 0
.............................................................................................................................................................................................................................CCGGGAGCGATGGGCTGC........... 18 3 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:20 AM