dsi_30287

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-

CACAAATTAAAACTCTGTCATTTTTGGCGTACATTGTCCGAATATTTCAGGTAAATTAATATTATTTATGTAAATGTTAAATGTATACATTTAAATTATACCTGTTACTCGTAGAGCAAAAGGGTATATTCCAAATTCATTGAAAAGCATGTATCATGTATAAGGAAGCGTTTCCGGCCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCTGGATA ***********************************************************************************************************....((......(((....((((..............(((((...)))))....)))).....)))....................))***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR902008 ovaries	M025 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	M053 female body
.............................................................................................................CGTAGAGCAAAAGGGTA............................................................................................................................	17	0	8	5.25	42	42	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGG..............................................................................................................................	15	0	8	3.75	30	29	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................GTAGAACAAAAGGGTAAAATCC......................................................................................................................	22	3	2	3.00	6	0	2	0	2	0	2	0	0	0	0	0	0
...............TGTCATTTTTGGCGTACATTGTCCGAA................................................................................................................................................................................................................	27	0	1	3.00	3	1	0	1	0	0	0	0	0	0	1	0	0
..............................................................................................................GTAGAGCAAAAGGGTAAAAGCC......................................................................................................................	22	3	2	3.00	6	0	5	0	1	0	0	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGT.............................................................................................................................	16	0	8	1.38	11	11	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGTAAA..........................................................................................................................	19	1	16	1.06	17	17	0	0	0	0	0	0	0	0	0	0	0
.............TCTGTCATTTTTGGCGTACATTGTC....................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
......TTAAAACTCTGTCATTTTTGGCGTAC..........................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
......TTAAAACTCTGTCATTTTTGGC..............................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGGAGTGGC....................	27	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................GTCATTTTTGGCGTACATTGTCCGA.................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TAGCCAAGTCGAAGTGGCAATGTC..............	24	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGAAGT.......................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGAGCAAAAGGGTA............................................................................................................................	15	0	12	0.92	11	10	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................GTATATATATTCTTGATCAGGATC........................................	24	0	20	0.85	17	0	0	0	0	0	17	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGTAAAAGC.......................................................................................................................	22	3	6	0.83	5	5	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGTAAAA.........................................................................................................................	20	2	20	0.80	16	16	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CGCGTAGAGCAAAAGGG..............................................................................................................................	17	1	8	0.63	5	4	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGTAA...........................................................................................................................	18	1	19	0.53	10	10	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CACGTAGAGCAAAAGGGTA............................................................................................................................	19	1	13	0.46	6	6	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGTA............................................................................................................................	16	0	11	0.45	5	5	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CGCGTAGAGCAAAAGGGCA............................................................................................................................	19	2	16	0.44	7	1	0	0	0	0	0	6	0	0	0	0	0
.........................................................................................................TACTCGTAGAGCAGGAGGGTATGTT........................................................................................................................	25	3	5	0.40	2	0	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................................TACTCGTAGAGCAAAAGGGTATA..........................................................................................................................	23	0	5	0.40	2	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................................CACGTAGAGCAAAAGGGT.............................................................................................................................	18	1	13	0.38	5	5	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGCA............................................................................................................................	16	1	20	0.30	6	0	0	0	0	0	0	0	0	6	0	0	0
..............CTGTGATTTTTGGCGGACA.........................................................................................................................................................................................................................	19	2	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................CGTAGAGCAAAAGGGC.............................................................................................................................	16	1	18	0.22	4	0	0	1	0	0	0	0	0	3	0	0	0
...........................................................................................................CACGTAGAGCAAAAGGG..............................................................................................................................	17	1	19	0.21	4	4	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TCGCGTAGAGCAAAAGGGCA............................................................................................................................	20	3	20	0.20	4	1	0	0	1	0	0	2	0	0	0	0	0
...........................................................................................................CACGTAGAGCAAAAGG...............................................................................................................................	16	1	20	0.20	4	4	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CACGTAGAGCAAAAG................................................................................................................................	15	1	20	0.20	4	4	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGCA............................................................................................................................	17	1	16	0.19	3	0	0	0	0	0	0	0	0	3	0	0	0
............................................................................................................TCGTAGAGCAAAAGGGCTTTTT........................................................................................................................	22	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGTAAAAGC.......................................................................................................................	21	3	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CACGTAGAGCAAAAGGGTAAA..........................................................................................................................	21	2	20	0.15	3	3	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGC.............................................................................................................................	15	1	20	0.15	3	0	0	0	0	0	0	0	0	1	2	0	0
..............................................................................................................GTAGAGCAAAAGGGCAAATTC.......................................................................................................................	21	2	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................TCGTAGAGCAAAAGGGT.............................................................................................................................	17	0	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................TCGTAGAGCAAAAGGGTAT...........................................................................................................................	19	0	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGA..........................	28	0	8	0.13	1	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGC..........................	28	1	9	0.11	1	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................CGCGTAGAGCAAAAGGGC.............................................................................................................................	18	2	18	0.11	2	0	0	1	0	0	0	1	0	0	0	0	0
............................................................................................................GCGTAGAGCAAAAGG...............................................................................................................................	15	1	19	0.11	2	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGA..........................	21	0	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGTAA...........................................................................................................................	17	1	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGTAAA..........................................................................................................................	18	1	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGAGCAAAAGGGTAAA..........................................................................................................................	17	1	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGG...........................................	25	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................................GTATATATATTCTTGATCAGGA..........................................	22	0	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0
............................................TTTCAGGTACATTAAAATT...........................................................................................................................................................................................	19	2	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAGCAAAAGGGT.............................................................................................................................	15	0	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GTAGAACAAAAGGGTAAAATC.......................................................................................................................	21	3	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................AATTATACCTGTAACT.............................................................................................................................................	16	1	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTTCCGGCAATATAAAGTATA...........................................................	21	1	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................GCGTAGAGCAAAAGGG..............................................................................................................................	16	1	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................CGTAGAGCAAAAGGGTGGA..........................................................................................................................	19	2	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTGATCAGGATCAATAGCCAATTCGA..........................	26	1	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................ATCAGGATCAATAGCCAAGTC............................	21	0	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................TTGATCAGGATCAATAGCCAAGTTGA..........................	26	1	16	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................AAGTATATATATTCTTGATCAGG...........................................	23	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGATGATGATCAATAGCCATGTCGA..........................	25	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................AAGGATGTATCATGTGAAA.......................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................TTGATGATGATCAATAGCCATGTCGA..........................	26	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TTTATTCAAAATTCATTGA...........................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................AGAGCAAAAGGGTAA...........................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTTGATCAGGATCAATAGCCAAGTCA...........................	26	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CCCGTAGAGCAAAAG................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................ATATAAAGTATATATATT.....................................................	18	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................CTTAGAGCAAAAGGG..............................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT.....................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................TATATATTCTTGATCAGGATCAATAG...................................	26	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CAATAGCCAAGTCGA..........................	15	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................AGTATATATATTCTTGATCAGGATC........................................	25	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:2156631-2156880 -	dsi_30287	CACAA--ATTAAAACTCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------ATTAATATTATT------TAT-----GTAAATGTTAAATGTAT----------ACATT-T----AAATTATACCTGTTACTCGTA------GAGC-AAAAGGGTATATTCCAAATTCATTGAAA-------AGCATGTATCATGTATAAGGAAGCGTTTCCGGCCATATAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCTGGAT------A
droSec2	scaffold_59:45977-46230 -		CACAA--ATTAAAACTCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------ATTAATATTATT------TAT-----GTAAATGTTAAATGTAT----------ACATT-A----AAATTATACCTGTTACTCGTA------GAGC-AAAAGGGTATA--CTAAATTCCTTGAAA-------AGAATGTATCATGTATAAGAAAGCGTTTCCGGTCATATAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCTGGATTGAAATA
dm3	chr2R:1104646-1104899 -		CACAA--ATTAAAACTCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------ATTAATATTATT------TAT-----GTAAATGTTAAATTAAT----------AGATT-A----TAATTATACCTGTTACTCGTA------GAGC-AAAAGGGTTTA--CTAAATTCGTTAAAAAA---TAAGTATGTATCATGTATACGGATGCGTTTCCAA----GTAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCGAGTCGAACTGGCCATTTCCGCCTGTCTGGATTGAAATA
droEre2	scaffold_4845:22062986-22063213 -		TAAAA--AATAAAA----GGAATTC------------TTACCACAACACTTT--------------------------------------------TCGAATATTATCACGTATTTC-----------G---------------------------------------------------------------------------------------------------T------GGT-----GTAACTTTTT---GATA----------CGTAT-T----TAAATATACCCGTGACTCGTA------GAGT-AAAAGGGTAAA--CTAGATTCGTTGAAA-------AGCATGTATTAGGGAGAAGGATGCGTTTCCGACCATATAAAGTATATAT------ATTCTTAATCAGGATCAATAGCCAAATCGAACTGGCCATGTCCGTATG--------------
droYak3	v2_chr2L_random_024:7526-7763 +		CTCCA--ATTAAGCACAAATCGTTT------------TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCCATTATATTCAA------------------------------------------------G-------------AATAC-C----TTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--CTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGTCT------G
droEug1	scf7180000408987:212817-213057 +		ACAA---AATAAAACTTTTTAAGAT------------TTGTATAATTT-----A-----AAAAATGTTAAAAATTAAAAACATTGTCTG---------------------------------------------------------------------------------------------------------GT-----------------------------------------------CAATAATAAA---CT-T----------TAATG-C----TTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--CTAGATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCGTTTCCGGCCCTATAAAGTGTATAT------ATTCTTGTTCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCT------G
droBia1	scf7180000297427:46112-46384 -		TTTCC--ATTATAATTATGTT--------------------------------------------------------------------------------------------TCTCATTT------TATGGATGGCCATACATGAAATATT---------------T-------------AAGAAA------------------------------ATTAAAGTGAT-------TATGAAATAAAAATGTTTAACCTATTCTTATTAAAAAGTT-A----TTTTTATACCCGTTATTCGTA------AAGT-AAAAGGGTATA--CTATATTCGTCGGAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATACGAGTATTCTTTATCAGGATCACTAGCCGAGTCGATATAGCCATGTCCGTTTGTCCGTAT------G
droTak1	scf7180000414077:8253-8487 +		CACAT---TGGGA---------TGAAAAGCCTTTTTTTTGGCAGAAAGT-----------------------------------------------CCCAAATT-ATTTTGT---------GAAATTTT-----------------------TGGT------------------TTT---T------CTTTTT---------------------------------------------------------------------TTA-----TTAAA-C----TATTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--TTAGATTCGTGCAAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATATAT------ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------
droEle1	scf7180000490980:97069-97319 +		CACAG--ATCAAAACTTGAT--TTT------------CCGGTAC--A-----GA------------------------------------------CCGACTCT----------------------------------------------TT---------------G-------------ATTTAA-------ACAATTATACTTAAAACTTTTTGTATGATACCATT------TTT-----TTAAA--------GTGT----------AAATA-A----TGTTTATACCCGTTACTCGTA------AAAT-AAAAGGGTATA--TTGTATTCACTGAAA-------AGTATGTAACAGTTAGAAGGAAGCGATTCCAACCATGTAAAGTATA--T------ATTCTTAATCAGGTTCAATAGCCGAGTCGAGATAGCTATGTCCGTCTTTCTG----------
droRho1	scf7180000776958:6387-6626 -		ATAA---ATTCAAAT-----AATTC------------TTTGTT--------------------------------------------TG-------CT-----------------------TAAATTGT-----------------------TTAAATATAAGCTGAT-------------GGGTCT------------------------------TTTCATTTTC-T------TGT-----GCAACTCGTAAT----------------TATT-T----TTATTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--TTATATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT------ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------
droFic1	scf7180000451524:268-506 -		ATAA---ATTAGGTGTTTATAACTT------------TTATCTTACTTC---TT------------------------------------------AT---------------------TCTGAATT-----------------------CT---------------G-------------AGCTTA------------------------------TATAATATAATT------ATT-----TTAAATAT-AGATATAT----------ACATA-T----TTTTTATACCC-----TTGCA------GAGC-AAAAGGGTATT--ATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATGTAT------ATTCTTGATCAGCATGACGAGCAGAATCGAAATATGTATGTACGTCTGTCCG----------
droKik1	scf7180000301788:1733-1949 +		AAGA---TTTAGAA-------ATTT------------TTTAGATACATT----T------------------------------------------ACGAAT-T----------------------------------------------TT---------------C-------------GGTTAC------------------------------CTCAAGATTATG----T-TAT-----CTTAACGA-A----AAT----------TAATA-A----TTTATATACAC-----TT---------------GCAGGGTATT--ATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCATATAAAGTATATAT------ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------
droAna3	scaffold_12984:247717-247933 -		ACAA---GTGAAAATT---TGATTT------------TTGGGACACCTTTTT--------------------------------------------GCGAA-----------------------------------------------------------------------------------GAA------------------------------ATTAAAATT-TT------GGT-----GAAAATGTTT---GAAC----------ATTTT-A----TTTTTATACCC-----TTGCA-------------GAGGGTATT--ATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATAT------ATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCG----------
droBip1	scf7180000394857:1986-2222 -		T-----------------GTCCTTG------------ATGGAATTCATT---CATCAAATGAAAATTTAATAAATTCAATCATTTGCTCGTT------------------------------------------------------------------------------------------------------------------------------------------------GT-----CAAAAAATAC---ATCC----------ACTAC-A----TAATTATACCATGTACTCGTA------AAGT-ACATAGGTATA--TTGTAGTCTTGTAAA-------TCTATGTAACATAAA-AAAGAATCATCTCCGACCCCATAAACTATATTT------ATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTAA------A
dp5	Unknown_group_465:10385-10633 -		CATAA--ATTTTTATATA--TATTT------------TTTTTTTCTATT---CT------------------------------------------CCAATCAC----------------------------------------------AA---------------T-------------AGATAT------------------------------ACTAATATATCT------ATT-----A--AAAATACAGCCTAT----------TTTTA-A----TTTTTATACCCGATACTCAAA----ATGAGT-ATTGGGGTATA--TTAGATTTGTGGTGAAAATGGATGTGTGTAACATCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATAT------ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCACTGTCTGCCTGTCCG----------
droPer2	scaffold_43:422878-423140 +		CACAA--ATCAAAACATTGTAATTT------------TTGGCATACATT---GT------------------------------------------ACGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------TTTAAAGATTCGAATGTGTAA-----TTTAACGTGATAATTAT----------AATTA-A----TTATTATACCCGATACTCAAA----ATGAGT-ATTGGGGTATA--TTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATAT------ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCT------G
droWil2	scf2_1100000004515:4099679-4099915 +		CAAA---TCCAAAACTGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGTATAGCATA-TTTTAATTTTAAT-AGCCC-CCATTTCGCCATTATTTT------------------------------------------------------C----------CATAC-A----TTTTTATACCATACACCCATA------GGGT-GAAATGGTATA--TTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATAT------ATTCTTGATCAGGATCAAAAACTGAGTCGATCTAGCCATGTCCGTCTGTCCG----------
droVir3	scaffold_12823:612886-613114 -		CACAA--GTT-------CGTCACTT------------AAGGCGTTCTTT---TT------------------------------------------GCGACGAT----------------------------------------------TT---------------T-------------AAGA-----------------------------------------------------------TAAACATTT---ATAT----------ATCAA-T----TTTTTATACCCTGAACCCATTAAAAATGGAT-ATAAGGGTATA--TTGTATTTGTGCAAAATTTAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAGGTATATAT------ATTCTTGATCAGCATCAATAGCCGAGTCCATCTACCCATGTCCGTCTGTCTG----------
droMoj3	scaffold_6500:1929325-1929574 -		CAATA--AT-AATATTTAATAATTT------------CTTCTTTATATT---TT------------------------------------------GT--AAAT----------------------------------------------TT---------------T-------------AAGTAT------------------------------AAATATATTTTT------T-------A--AATTTGTAAACTATTAGTAC----AATACAT----TTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATA--ATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATAT------ATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCG----------
droGri2	scaffold_14906:2513630-2513892 +		CGAATGAAT-----TGCTGTAGA----------------------CTGG---TT-----------------AATCTGCATACTTTGGTCTTTGTATACAAGTAT----------------------------------------------AA---------------T-------------ATGTAG------------------------------ATTAATAATACGAAATT-CCA-----GAAGTTATAAAATGCT------------TTTA-ATTTTAAACTGAACCCATTAAAAATG------GGTA-AAAAGGGTATA--ATGCTTTTGTGCAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATAT------ATGCTTGATCAGGGTCAACAGTCGAGTCGATTTAGCCATGTCCGTCCGTCCG----------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CACAA--ATTAAAACTCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------ATTAATATTATT------TAT-----GTAAATGTTAAATGTAT----------ACATT-T----AAATTATACCTGTTACTCGTA------GAGC-AAAAGGGTATATTCCAAATTCATTGAAA-------AGCATGTATCATGTATAAGGAAGCGTTTCCGGCCATATAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCTGGAT------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................CGTA------GAGC-AAAAGGGTA...............................................................................................................................................	17	8	5.25	42	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CGTA------GAGC-AAAAGGG.................................................................................................................................................	15	8	3.75	30	0	0	0	0	0	0	0	29	1	0	0	0	0	0	0	0	0
.................TGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAA............................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CGTA------GAGC-AAAAGGGT................................................................................................................................................	16	8	1.38	11	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0
...............TCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........TTAAAACTCTGTCATTT------------TTGGCGTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........TTAAAACTCTGTCATTT------------TTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGA.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGAAGTGGCAATGTC....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGAAGT.............................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TA------GAGC-AAAAGGGTA...............................................................................................................................................	15	12	0.92	11	0	0	0	0	0	0	0	10	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GTATATAT------ATTCTTGATCAGGATC..............................................	24	20	0.85	17	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CGTA------GAGC-AAAAGGGTAA..............................................................................................................................................	18	19	0.53	10	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTA------GAGC-AAAAGGGTA...............................................................................................................................................	16	11	0.45	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TACTCGTA------GAGC-AAAAGGGTATA.............................................................................................................................................	23	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CGTA------GAGC-AAAAGGGC................................................................................................................................................	16	18	0.22	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTA------GAGC-AAAAGGGC................................................................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCGTA------GAGC-AAAAGGGT................................................................................................................................................	17	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCGTA------GAGC-AAAAGGGTAT..............................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGA................................	28	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGC................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGA................................	21	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTA------GAGC-AAAAGGGTAA..............................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATAT------ATTCTTGATCAGG.................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GTATATAT------ATTCTTGATCAGGA................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTA------GAGC-AAAAGGGT................................................................................................................................................	15	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCAAGTC..................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATAT------ATTCTTGATCAGG.................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................A------GAGC-AAAAGGGTAA..............................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCAAGTCA.................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................ATATAAAGTATATAT------ATT...........................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ATATAT------ATTCTTGATCAGGATCAAT...........................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TATAT------ATTCTTGATCAGGATCAATAG.........................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCAAGTCGA................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AGTATATAT------ATTCTTGATCAGGATC..............................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

CACAA--ATTAAAACTCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------ATTAATATTATT------TAT-----GTAAATGTTAAATGTAT----------ACATT-A----AAATTATACCTGTTACTCGTA------GAGC-AAAAGGGTATA--CTAAATTCCTTGAAA-------AGAATGTATCATGTATAAGAAAGCGTTTCCGGTCATATAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCTGGATTGAAATA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................GTATATAT------ATTCTTGATCAGGA................................................	22	20	0.05	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAT------ATTCTTGATCAGGATCAATAGC........................................	25	20	0.05	1	0	1	0	0

dm3

CACAA--ATTAAAACTCTGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------ATTAATATTATT------TAT-----GTAAATGTTAAATTAAT----------AGATT-A----TAATTATACCTGTTACTCGTA------GAGC-AAAAGGGTTTA--CTAAATTCGTTAAAAAA---TAAGTATGTATCATGTATACGGATGCGTTTCCAA----GTAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCGAGTCGAACTGGCCATTTCCGCCTGTCTGGATTGAAATA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................TGTCATTT------------TTGGCGTACATT---GT------------------------------------------CCGAA............................................................................................................................................................................................................................................................................................................................................................................	27	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................TTGGCGTACATT---GT------------------------------------------CCGAATAT----------------------------------------------TT---------------C-------------AGGA........................................................................................................................................................................................................................................................................................	29	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGAACTGGC..........................	26	7	5.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	7	0	6	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGA.....................................	21	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAG....................................	21	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGAACTGGCCATTTC....................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGAA...............................	27	8	0.50	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGAACTGGCCATTTCC...................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGAACTGGCCATTTCC...................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATAT------ATTCTTGATCAGGATC..............................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGAACTGG...........................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCGAGTCGAACTGG...........................	28	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGCCGAGTCGAA...............................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGAAC..............................	28	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCAATAGCCGAG....................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TATAT------ATTCTTGATCAGGA................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCC.......................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ATATAT------ATTCTTGATCAGGAT...............................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGAAT..............................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGA.....................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAT------ATTCTTGATCAGGATCAATAGCCG......................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTC..................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT...................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAAAA--AATAAAA----GGAATTC------------TTACCACAACACTTT--------------------------------------------TCGAATATTATCACGTATTTC-----------G---------------------------------------------------------------------------------------------------T------GGT-----GTAACTTTTT---GATA----------CGTAT-T----TAAATATACCCGTGACTCGTA------GAGT-AAAAGGGTAAA--CTAGATTCGTTGAAA-------AGCATGTATTAGGGAGAAGGATGCGTTTCCGACCATATAAAGTATATAT------ATTCTTAATCAGGATCAATAGCCAAATCGAACTGGCCATGTCCGTATG--------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

CTCCA--ATTAAGCACAAATCGTTT------------TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCCATTATATTCAA------------------------------------------------G-------------AATAC-C----TTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--CTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATAT------ATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGTCT------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCG......................................	15	20	1.55	31	0	0	0	0	0	0	0	0	0	0	31
......................................................................................................................................................................................................................................................................................................TACTCGTA------GAGT-AAAAGGGTATA--CTAGA......................................................................................................................................	28	20	0.40	8	0	0	8	0	0	0	0	0	0	0	0
..................................................................................................TAACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCC............................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGAC....................................................................................	22	20	0.25	5	0	0	0	0	0	0	5	0	0	0	0
..................................................................................................TAACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCCAT..........................................................................................................................................................................................................................................................................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGGCCATGTCCGTCTGTCC...........	25	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCGTTTCCGACCATA................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAG....................................	24	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTT..........................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
....................................................................................................................................................................................T------CCTTTTTTCCATTATATTCAA------------------------------------------------G-------------AAT................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TA------GAGT-AAAAGGGTATA--CTAGATT....................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................TAACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCCA...........................................................................................................................................................................................................................................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
......................TTT------------TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TC.........................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACCAT.................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCGTT..........................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.....................................TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------...................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................TCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TT.................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................TT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TTT---.............................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCGTCT------G	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................TT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TTT---T------CC....................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................AACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCCAT..........................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGT...........................................................................................	22	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................TTT---T------CCTTTTTTCCATTATATTCAA------------------------------------------------G-------------AA.................................................................................................................................................................................................	28	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
...................TCGTTT------------TTCTCTT-CATT---GT------------------------------------------CATAACA..........................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TT---T------CCTTTTTTCCATTATATTCAA------------------------------------------------G-------------AA.................................................................................................................................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................AACAT----------------------------------------------TCTAGT------------------TTT---T------CCTTTTTTCCA...........................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTTGGCCATGT.....................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TACTCGTA------GAGT-AAAAGGGTATA--CTAG.......................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AGGGTATA--CTAGATTCGTTGA..............................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................T-CATT---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TTT---T------CCT...................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CGTTGAAA-------AGTATGTAACAG.........................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTTTCCATTATATTCAA------------------------------------------------G-------------AATAC-C----TTT.....................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTTCCATTATATTCAA------------------------------------------------G-------------AATAC-C----TT......................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................T---GT------------------------------------------CATAACAT----------------------------------------------TCTAGT------------------TTT---T------CCTT..................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TATAT------ATTCTTGATCAGGATCAATAG.........................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................TCGTTT------------TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------...........................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................TCGTTT------------TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TC.........................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................TT------------TTCTCTT-CATT---GT------------------------------------------CATAACAT----------------------------------------------TC.........................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTCCATTATATTCAA------------------------------------------------G-------------AATAC-C----TT......................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTTTCCATTATATTCAA------------------------------------------------G-------------AATAC-C----TTT.....................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAGGCAGAAGGAAG..............................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTTGGCC.........................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

ACAA---AATAAAACTTTTTAAGAT------------TTGTATAATTT-----A-----AAAAATGTTAAAAATTAAAAACATTGTCTG---------------------------------------------------------------------------------------------------------GT-----------------------------------------------CAATAATAAA---CT-T----------TAATG-C----TTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--CTAGATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCGTTTCCGGCCCTATAAAGTGTATAT------ATTCTTGTTCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCT------G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTCC--ATTATAATTATGTT--------------------------------------------------------------------------------------------TCTCATTT------TATGGATGGCCATACATGAAATATT---------------T-------------AAGAAA------------------------------ATTAAAGTGAT-------TATGAAATAAAAATGTTTAACCTATTCTTATTAAAAAGTT-A----TTTTTATACCCGTTATTCGTA------AAGT-AAAAGGGTATA--CTATATTCGTCGGAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATACGAGTATTCTTTATCAGGATCACTAGCCGAGTCGATATAGCCATGTCCGTTTGTCCGTAT------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACAT---TGGGA---------TGAAAAGCCTTTTTTTTGGCAGAAAGT-----------------------------------------------CCCAAATT-ATTTTGT---------GAAATTTT-----------------------TGGT------------------TTT---T------CTTTTT---------------------------------------------------------------------TTA-----TTAAA-C----TATTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--TTAGATTCGTGCAAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATATAT------ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACAG--ATCAAAACTTGAT--TTT------------CCGGTAC--A-----GA------------------------------------------CCGACTCT----------------------------------------------TT---------------G-------------ATTTAA-------ACAATTATACTTAAAACTTTTTGTATGATACCATT------TTT-----TTAAA--------GTGT----------AAATA-A----TGTTTATACCCGTTACTCGTA------AAAT-AAAAGGGTATA--TTGTATTCACTGAAA-------AGTATGTAACAGTTAGAAGGAAGCGATTCCAACCATGTAAAGTATA--T------ATTCTTAATCAGGTTCAATAGCCGAGTCGAGATAGCTATGTCCGTCTTTCTG----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATAA---ATTCAAAT-----AATTC------------TTTGTT--------------------------------------------TG-------CT-----------------------TAAATTGT-----------------------TTAAATATAAGCTGAT-------------GGGTCT------------------------------TTTCATTTTC-T------TGT-----GCAACTCGTAAT----------------TATT-T----TTATTATACCCGTTACTCGTA------GAGT-AAAAGGGTATA--TTATATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT------ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATAA---ATTAGGTGTTTATAACTT------------TTATCTTACTTC---TT------------------------------------------AT---------------------TCTGAATT-----------------------CT---------------G-------------AGCTTA------------------------------TATAATATAATT------ATT-----TTAAATAT-AGATATAT----------ACATA-T----TTTTTATACCC-----TTGCA------GAGC-AAAAGGGTATT--ATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATGTAT------ATTCTTGATCAGCATGACGAGCAGAATCGAAATATGTATGTACGTCTGTCCG----------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGA---TTTAGAA-------ATTT------------TTTAGATACATT----T------------------------------------------ACGAAT-T----------------------------------------------TT---------------C-------------GGTTAC------------------------------CTCAAGATTATG----T-TAT-----CTTAACGA-A----AAT----------TAATA-A----TTTATATACAC-----TT---------------GCAGGGTATT--ATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCATATAAAGTATATAT------ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACAA---GTGAAAATT---TGATTT------------TTGGGACACCTTTTT--------------------------------------------GCGAA-----------------------------------------------------------------------------------GAA------------------------------ATTAAAATT-TT------GGT-----GAAAATGTTT---GAAC----------ATTTT-A----TTTTTATACCC-----TTGCA-------------GAGGGTATT--ATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATAT------ATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCG----------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................................T------ATTCTTGATCAGGATCACCT..........................................	21	20	0.25	5	0	0	0	0	5	0
........................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAAA-------AGTGTGC..............................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CAGTGAAGGAGACATCTC........................................................................................	18	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TT--ATAATTTTGGTCAAA-------AGTGTGCAACG..........................................................................................................	28	20	0.05	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTCGATATGAGCATGTCCGTC................	25	20	0.05	1	0	0	0	0	1	0

droBip1

T-----------------GTCCTTG------------ATGGAATTCATT---CATCAAATGAAAATTTAATAAATTCAATCATTTGCTCGTT------------------------------------------------------------------------------------------------------------------------------------------------GT-----CAAAAAATAC---ATCC----------ACTAC-A----TAATTATACCATGTACTCGTA------AAGT-ACATAGGTATA--TTGTAGTCTTGTAAA-------TCTATGTAACATAAA-AAAGAATCATCTCCGACCCCATAAACTATATTT------ATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTAA------A	Size	Hit Count	Total Norm	Total
No Reads

dp5

CATAA--ATTTTTATATA--TATTT------------TTTTTTTCTATT---CT------------------------------------------CCAATCAC----------------------------------------------AA---------------T-------------AGATAT------------------------------ACTAATATATCT------ATT-----A--AAAATACAGCCTAT----------TTTTA-A----TTTTTATACCCGATACTCAAA----ATGAGT-ATTGGGGTATA--TTAGATTTGTGGTGAAAATGGATGTGTGTAACATCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATAT------ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCACTGTCTGCCTGTCCG----------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT................................................................................................................	22	20	26.70	534	0	534	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAACA..........................................................................................................	28	8	1.00	8	0	7	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAACA..........................................................................................................	26	9	0.33	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCA................................................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAATGGATGTGTGTAACATC........................................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCACTG......................	22	5	0.20	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAATGGATGTGTGTAACAT.........................................................................................................	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCACTGTC....................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCG......................................	20	20	0.20	4	0	0	0	0	0	4	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCACTGT.....................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGCA.........................	21	18	0.17	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTG.................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.............................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAACAT.........................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAATGGATGTGTGTAACATC........................................................................................................	20	9	0.11	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GTGAAAATGGATGTGTGTAACA..........................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAATGGATGTGTGTAACA..........................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TAACATCCAGAAGGAATCGTT..........................................................................................	21	15	0.07	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATTGAGCA.........................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATCCAGAAGGAATCGTTTCCG......................................................................................	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACC...................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AATCGTTTCCGACCCCATAAA............................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................T-ATTGGGGTATA--TTAGATTTGT.................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGA.....................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CCCGATACTCAAA----ATGAGT-AT......................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TGGGGTATA--TTAGATTTGTGGTGAA...........................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................GATACTCAAA----ATGAGT-ATTG....................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGAGT-ATTGGGGTATA--TTAGA......................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATT..............................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................T------ATTCTTGATCAGCATCAATAGCCG......................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................TA--TTAGATTTGTGGTGAAAATGGA.....................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGT..............................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

CACAA--ATCAAAACATTGTAATTT------------TTGGCATACATT---GT------------------------------------------ACGAATAT----------------------------------------------TT---------------C-------------AGGTAA------------------------------TTTAAAGATTCGAATGTGTAA-----TTTAACGTGATAATTAT----------AATTA-A----TTATTATACCCGATACTCAAA----ATGAGT-ATTGGGGTATA--TTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATAT------ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCT------G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATA..............................................................................	24	20	0.65	13	0	13	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGATGT..................................................................................................................	22	20	0.30	6	0	0	0	0	0	6
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCT------.	24	20	0.25	5	0	5	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCA................................................................................	22	20	0.25	5	0	5	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCC..................................................................................	24	20	0.20	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ACGTCCAGAAGGAATCGTTTCCGA.....................................................................................	24	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCC.........................	19	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGA.....................................	23	20	0.10	2	0	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................AAA----ATGAGT-ATTGGGGTATA--TTAG.......................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ATATAT------ATTCTTGATCAGCAT...............................................	21	20	0.10	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGT..................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCATGTCTG..................	18	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT...............................	27	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTC........	18	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCC.................................................................................	21	20	0.05	1	0	0	0	0	0	1

droWil2

CAAA---TCCAAAACTGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGTATAGCATA-TTTTAATTTTAAT-AGCCC-CCATTTCGCCATTATTTT------------------------------------------------------C----------CATAC-A----TTTTTATACCATACACCCATA------GGGT-GAAATGGTATA--TTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATAT------ATTCTTGATCAGGATCAAAAACTGAGTCGATCTAGCCATGTCCGTCTGTCCG----------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATC..........................................................................................	25	20	0.45	9	0	0	0	9	0
...............................................................................................................................................................................................................................................................................................................................................................................................CACAAAGTATATAT------ATTCTTGATCAGGA................................................	28	20	0.25	5	0	5	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTC........................................................................................	25	20	0.15	3	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGTCCG----------	24	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAAAGTCGCCAAAA-------TGTATGTAACAG.........................................................................................................	26	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAGTCGATCTAGCCATG......................	22	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAAAACTGAGTCGATCTAGCC.........................	25	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTC........................................................................................	22	20	0.05	1	1	0	0	0	0
.............ACTGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGTA..................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............TGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGTATA................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................T-----------------------TGGTGTATAGCATA-TTTTAATTTTAA..............................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
...............TGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGTA..................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................CAAAA-------TGTATGTAACAGGCAGAAGGAAG..............................................................................................	28	20	0.05	1	0	1	0	0	0
.........................................................................................................................TAAGTTTT-----------------------TGGTGTATAGCATA-TT........................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCTC........................................................................................	26	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAACTGAGTCGATCTAGCC.........................	24	20	0.05	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................T-GAAATGGTATA--TTAAAGTCGCCA...............................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................TAAGTTTT-----------------------TGGTGTATAGCATA-TTT.......................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................TA------GGGT-GAAATGGTATA--TT.........................................................................................................................................	19	20	0.05	1	0	0	0	0	1
......................T--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGTATAGCATA-TTT.......................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CCCACAAAGTATATAT------ATTCTTGAT.....................................................	25	20	0.05	1	0	1	0	0	0
.......TCCAAAACTGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TG.......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...............TGTGTCCT--------------------------------------------------------------------------------------------------TAAGTTTT-----------------------TGGTGT...................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..............................................................................................................................TTT-----------------------TGGTGTATAGCATA-TTTTAATTTTA...............................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAAAAACT.......................................	22	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................CCCCACAAAGTATATAT------ATTCTTGA......................................................	25	20	0.05	1	0	1	0	0	0

droVir3

CACAA--GTT-------CGTCACTT------------AAGGCGTTCTTT---TT------------------------------------------GCGACGAT----------------------------------------------TT---------------T-------------AAGA-----------------------------------------------------------TAAACATTT---ATAT----------ATCAA-T----TTTTTATACCCTGAACCCATTAAAAATGGAT-ATAAGGGTATA--TTGTATTTGTGCAAAATTTAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAGGTATATAT------ATTCTTGATCAGCATCAATAGCCGAGTCCATCTACCCATGTCCGTCTGTCTG----------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................TTAAAAATGGAT-ATAAGGGTATA--T..........................................................................................................................................	24	20	0.45	9	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGAACCCATTAAAAATGGAT-ATAAGGG.................................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTAAAAATGGAT-ATAAGGGTATA--TTG........................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAGTCCA................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTCC.......................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAT------ATTCTTGATCAGCATCAATAGCCG......................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTAAAAATGGAT-ATAAGGGTATA--TTGTA......................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAGTCC.................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAGTCC.................................	22	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TACCCTGAACCCATTAAAAATGGAT-A.......................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................ACCCATTAAAAATGGAT-ATAAGGGT................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTAAAAATGGAT-ATAAGGGTATA--T..........................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAT------ATTCTTGATCAGCATCAAT...........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCC.......................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACCCTGAACCCATTAAAAATGGAT-ATAAG...................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTC........................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CCGACCCCATAAGGTATATAT------..............................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTAAAAATGGAT-ATAAGGGT................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCCGACC...................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAAGGAAG..............................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCT.........................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTAAAAATGGAT-ATAAGGGTATA--TT.........................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TACCCTGAACCCATTAAAAATGGAT-AT......................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCAT...........................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AAGCATCTCCGACCCCATAAGGTATAT......................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAATA--AT-AATATTTAATAATTT------------CTTCTTTATATT---TT------------------------------------------GT--AAAT----------------------------------------------TT---------------T-------------AAGTAT------------------------------AAATATATTTTT------T-------A--AATTTGTAAACTATTAGTAC----AATACAT----TTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATA--ATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATAT------ATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCG----------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAATCATCGC........................................................................................	27	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAT----TTTTTATACCCTGAACCC......................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCATCGCAGACCCCAT...............................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

CGAATGAAT-----TGCTGTAGA----------------------CTGG---TT-----------------AATCTGCATACTTTGGTCTTTGTATACAAGTAT----------------------------------------------AA---------------T-------------ATGTAG------------------------------ATTAATAATACGAAATT-CCA-----GAAGTTATAAAATGCT------------TTTA-ATTTTAAACTGAACCCATTAAAAATG------GGTA-AAAAGGGTATA--ATGCTTTTGTGCAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATAT------ATGCTTGATCAGGGTCAACAGTCGAGTCGATTTAGCCATGTCCGTCCGTCCG----------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCAT...........................................................................................	18	20	0.05	1	0	1

-8.1	-8.0	-7.6	-7.5

dsi_30287

2r:2156681-2156830 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads