ID:

dsi_30283

 Coordinate:

3r:10791060-10791209 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.7 -28.7 -28.7

Flybase annnotation

CDS [3r_10791210_10791412_-]; exon [3r_10791210_10791412_-]; intron [3r_10780106_10791209_-]

No Repeatable elements found

mature
  1. dsi_30283  3r:10791180-10791194 -
  2. node_14503:107-121 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCGCTCCTCTCGCCAAACAAATTCCGCGGCAGTTCCCATCGACGAAGAGGTGAGTTGACGTTCCATGACACTTGCATTTCCCAGCTGCTCAGTATGCCACGGGGCAATCGCGAATTCCTATGCTAATCTGGGCTCAATAAGTAGAAGAAATCCATGTAAATGGAAATCGTTTAGCAATGCTTTCAGATAATAGAAAAGTTGATAGTTGAATATATTTTCATATTAGTGGTGAAGGCTTTTAAAATAATC
**************************************************....(((((((((((((...((.((.(((((....(((((......(((.(((((((..............))))...))))))......)))))..))))).)).))..))))))..)).)))))...((((((........)).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................AATGGAAATCGTGTAGC.......................................................................... 17 1 1 18.00 18 18 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAGCGA........................................................................ 19 2 2 10.50 21 21 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAGCGAT....................................................................... 20 2 1 7.00 7 7 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAGCGATT...................................................................... 21 3 4 7.00 28 28 0 0 0 0 0
................................................................................................................................................................ATGGAAATCGTGTAGCGAT....................................................................... 19 2 2 1.50 3 3 0 0 0 0 0
................................................................................................................................................................ATGGAAATCGTGTAGC.......................................................................... 16 1 3 1.00 3 3 0 0 0 0 0
................................................................................................................................................................ATGGAAATCGTGTAGCA......................................................................... 17 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAGCA......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................AAATGGAAATCGTGTAGC.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTTTAGCGAT....................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAGCG......................................................................... 18 2 7 0.71 5 5 0 0 0 0 0
................................................................................................................................................................ATGGAAATCGTGTAGCGATT...................................................................... 20 3 6 0.67 4 4 0 0 0 0 0
..............................................................................................................................................................TAATGGAAATCGTGTAGC.......................................................................... 18 2 7 0.57 4 4 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAGCGATC...................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
.................................................................ATGACACTTGCATTT.......................................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................TAATGGAAATCGTGTAGCGA........................................................................ 20 3 11 0.27 3 3 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTAG........................................................................... 16 1 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................................AATGGAAATCGTGTA............................................................................ 15 1 20 0.25 5 5 0 0 0 0 0
..............................................................................................................................................................TAATGGAAATCGTGTAGCGAT....................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
.................................................................ATGACACTTGCATTCCTGAG..................................................................................................................................................................... 20 3 9 0.22 2 0 2 0 0 0 0
................................................................................................................................................................ATGGAAATCGTGTAGCGA........................................................................ 18 2 6 0.17 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TTAGTAGTGAAGGCT............ 15 1 9 0.11 1 1 0 0 0 0 0
..................................GCCCATCGACGAAGA......................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0
......................................................GTCGGCGTTCCATGTCACT................................................................................................................................................................................. 19 3 13 0.08 1 0 0 1 0 0 0
...............................................................................................................................................................ATTGGAAATCGTGTAGCGAT....................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
..................................TCCCATCGATGAAGA......................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 1 0
.................................................................................................................................................................TGGAAATCGTGTAGCGATT...................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..........................................TGGAAGAGGTGAGTTGA............................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CGGCGAGGAGAGCGGTTTGTTTAAGGCGCCGTCAAGGGTAGCTGCTTCTCCACTCAACTGCAAGGTACTGTGAACGTAAAGGGTCGACGAGTCATACGGTGCCCCGTTAGCGCTTAAGGATACGATTAGACCCGAGTTATTCATCTTCTTTAGGTACATTTACCTTTAGCAAATCGTTACGAAAGTCTATTATCTTTTCAACTATCAACTTATATAAAAGTATAATCACCACTTCCGAAAATTTTATTAG
**************************************************....(((((((((((((...((.((.(((((....(((((......(((.(((((((..............))))...))))))......)))))..))))).)).))..))))))..)).)))))...((((((........)).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................GTAAAGGGTCGACTAGTTCTAC......................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................TTACCTTTAGCACAT............................................................................ 15 1 20 0.10 2 0 2 0 0 0
...............................CCAAGGGTAGCTGATTC.......................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 1 0 0
.......................................................................GGACGTAAAGCGTAGACGAG............................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0
..........................................TCCTTCTCCACTCAA................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 1 0
....................................GGTAGCTGCTACTCC....................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1
.............................................................................AAAGGGTCGACTAGT.............................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 10:52 AM