ID:dsi_30271 |
Coordinate:3r:4652050-4652199 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3r_4651947_4652049_+]; CDS [3r_4651947_4652049_+]; intron [3r_4652050_4653721_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCATCTCCTGCCCAGTGGAGTTGTGAACGAGAAGTGCGTTTCCGTCATTGGTAAGTTGGGATGCTGGATTGGGGTATATTGTACATAGGCCAGGATCTGCAAAAATTATGAAGAAAAATAAGTCTTAGGTCATTGTATAAAGTATTTTGTATGAATCCCATCATAACTTGATTGGGGATCTTCTACATATAGCCTCCAACTTTTTATTTTTCTTGACCCTTTTCATGTTATAGAATCTTTTGACTAAAAT **************************************************....((((((..((((.....((((((.(((((((..(((((((((.........((((........))))))))).))))..))))))).))))))((((.((.((((((((.....))).))))).))...))))..)))).))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM343915 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR902009 testis |
M025 embryo |
M053 female body |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................................ATAGAATCTTTTGACTAAAAT | 21 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................AAGTGCGTTTCCGTCATTGGC...................................................................................................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................AGTTGTGAACGAGAAGTGC..................................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......CTGCCCAGTGGAGTTGTGAACGAGG.......................................................................................................................................................................................................................... | 25 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............CAGTGGAGTTGTGAACGAGG.......................................................................................................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..ATCTCCTGCCCAGTGGAGTTGTGAA............................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........CCCAGTGGAGTTGTGAAC.............................................................................................................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................GTGAACGAGAAGTGCGTTTCC............................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........TGCCCAGTGGAGTTGTGAACG............................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........TGCCCAGTGGAGTTGTGAAC.............................................................................................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................CGTTTCCGTCATTAGT...................................................................................................................................................................................................... | 16 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........TGCCCAGTGGCGTTGTGAA............................................................................................................................................................................................................................... | 19 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............GTGGAGTTGTGAACGAGAAGTGCGT................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................TGTGAACGAGAAGTGCGTTTCCGTCA........................................................................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .CATCTCCTGCCCAGTGGAGTT.................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............AGTGGAGTTGTGAACGAGA.......................................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............TGGAGTTGTGAACGAGAAGTGCGTT.................................................................................................................................................................................................................. | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....CTCCTGCCCAGTGGAGTTGTGAACGAGAA......................................................................................................................................................................................................................... | 29 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............AGTGGAGTTGTGAACGAGAAGTGCG.................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................GGAGTTGTGAACGAGA.......................................................................................................................................................................................................................... | 16 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................GAGAAGTGCGTTTCCGTCATTGGC...................................................................................................................................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......CCTGCCCAGTGGAGTTGTGAACGAGAAGT....................................................................................................................................................................................................................... | 29 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................TTAGGTCATTGCATA............................................................................................................... | 15 | 1 | 18 | 0.44 | 8 | 0 | 2 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 0 |
| ...........................................................................................................................CTTAGGTCATTGCATA............................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........................AAACGAGAAGTGGGTTACC............................................................................................................................................................................................................... | 19 | 3 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| ..........................................................................................................................................................................................ATATGGCCACGAACTTTTTA............................................ | 20 | 3 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................CAGGATCTGCGAAAA................................................................................................................................................. | 15 | 1 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ......................................TTTCGGTCAATGGTAAG................................................................................................................................................................................................... | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
GGTAGAGGACGGGTCACCTCAACACTTGCTCTTCACGCAAAGGCAGTAACCATTCAACCCTACGACCTAACCCCATATAACATGTATCCGGTCCTAGACGTTTTTAATACTTCTTTTTATTCAGAATCCAGTAACATATTTCATAAAACATACTTAGGGTAGTATTGAACTAACCCCTAGAAGATGTATATCGGAGGTTGAAAAATAAAAAGAACTGGGAAAAGTACAATATCTTAGAAAACTGATTTTA
**************************************************....((((((..((((.....((((((.(((((((..(((((((((.........((((........))))))))).))))..))))))).))))))((((.((.((((((((.....))).))))).))...))))..)))).))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
M024 male body |
O001 Testis |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................TTTCATAAAACATACTTAGG............................................................................................ | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................TCCGGTCCTAGACGTTTTTAAT.............................................................................................................................................. | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................GCCGGTCCTAGGCGTTTTTGAT.............................................................................................................................................. | 22 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................CCGGTCCTAGGCGTTTTTGAA.............................................................................................................................................. | 21 | 3 | 3 | 0.67 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................GCCGGTCCTAGTCGTTTTTGAT.............................................................................................................................................. | 22 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................CCGGTCCTAGATTTTTTTA................................................................................................................................................ | 19 | 2 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................GCCGGTCCTAGTCGTTTTTGA............................................................................................................................................... | 21 | 3 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................TCAACACTTGCTCTA......................................................................................................................................................................................................................... | 15 | 1 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..TAGAGGACGCGTCTCCT....................................................................................................................................................................................................................................... | 17 | 2 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................GGGAAAAGTACAGGTTCTTA.............. | 20 | 3 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................AAAAGAACAGCGAGAAGTACAA..................... | 22 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................................................................AAAAAGAACTGGGCA............................. | 15 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................................................................................................................................AGAACTCGGAAAAGT......................... | 15 | 1 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................AAAGAACAGCGAGAAGTACAA..................... | 21 | 3 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...........................................................................................................................................................................................................................AAAAGTACTATATCT................ | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................................................GGCTCCAGTAACATAGTT............................................................................................................. | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Generated: 04/24/2015 at 10:20 AM