ID:

dsi_3027

 Coordinate:

2r:3185584-3185733 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.2 -24.1 -24.1 -24.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+
mature
  1. 2l:11831660-11831676 +
  2. 2l:21025978-21025994 +
  3. 2l:21256308-21256324 -
  4. 2l:21452311-21452327 +
  5. 2r:2505201-2505217 -
  6. 2r:2571423-2571439 +
  7. 2r:2620003-2620019 +
  8. dsi_3027  2r:3185712-3185728 +
  9. 2r:21483126-21483142 +
  10. dsi_6434  3l:12640957-12640973 -
  11. 3l:19646737-19646753 -
  12. 3l:23348463-23348479 +
  13. 3r:83780-83796 -
  14. 4:69896-69912 -
  15. 4:371415-371431 -
  16. 4:603953-603969 +
  17. x:10417-10433 -
  18. x:17705855-17705871 +
  19. node_101820:4057-4073 -
star

Sense Strand Reads

CAAGAACCTCGACGAATACTCACTTAAATCGCCCAAGTCACCTATAGCTGGTTAGTATACCAATATAAGTATTACATCAATTAAGTAAAAAGTGTGATTGTTTTTTGACATTTGTATTTCGAGGCAAAAAAAAAACTCTAATAAGGAGTACGTATGATTGAATTGTTATAGCCGATGCTCGTAAAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTCACTAGTAGAAGAAAGTGTTTCCGACCATA
**************************************************...((..((((..(((.((((((((((((((((.(((.....(((....(((((((.....((((........))))..)))))))....))).....)))...)))))))..))).......)))))).))).........))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 M025
embryo
..........................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAA...................................... 26 0 20 24.85 497 314 183 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCGTTGAAAAGTATGTCACTAGTAGA.................... 27 0 1 3.00 3 0 0 0 2 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAAAGTA................................. 27 0 20 2.10 42 0 42 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGAAAAGTATGTCACTAGTAGAAGAA................ 26 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTCACTAGTAGAAGAAAGTGTT.......... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAAAAG................................... 26 0 20 1.60 32 16 16 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTAAAAGGGTATACTAGATTCGTTGAA...................................... 27 0 20 1.05 21 11 10 0 0 0 0 0 0 0 0 0 0
...............................CCCAAGTCACCTATAGCTG........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................AGCTGGTTAGAATACC............................................................................................................................................................................................. 16 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TAAGGAGTACGTATGATTGAATTGATAA................................................................................. 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TATAGCCGATGCTCGTAAAGTAAAAGA......................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATAGCCGATGCTCGTAAAGTAAAAGA......................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ATGTCACTAGTAGAAGAAAGTGTA.......... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAAGTATGTCACTAGTAGAAGAAAG.............. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TGAAAAGCATGTCACTAGTAGAAGAAAG.............. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTATGTCACTAGTAGAAGAAAGTGTT.......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ATGTCACTAGTAGAAGAAAGTGTT.......... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA...................................... 24 0 20 0.75 15 0 8 0 7 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAAAA.................................... 28 0 20 0.50 10 5 5 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTGAA...................................... 28 0 20 0.50 10 9 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGAGGGAATTGTGATAGCCGAT.......................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................GGGTATACTAGATTCGTTGAAAAG................................... 24 0 20 0.50 10 0 0 0 0 0 0 0 10 0 0 0 0
...........................................................................................................................................................................................AAAAGGGTATACTAGATTCGT.......................................... 21 0 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0 0
......................................................................................................................................................................TATAGCAGAAGCTCGTA................................................................... 17 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAA..................................... 25 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGTAAAGTAAAAGGGTATACTAG................................................ 24 0 11 0.27 3 0 0 0 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTAAAAGGGTATACTAGATTCGTTGA....................................... 26 0 20 0.25 5 3 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAAA..................................... 26 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTGA....................................... 27 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TATACTAGATTCGTTGAAAAG................................... 21 0 20 0.20 4 2 0 0 0 1 0 0 0 0 0 0 1
..................................................................................................................TAGTTCGAGGAAAAAAAAAA.................................................................................................................... 20 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................ATACTAGATTCGTTGAA...................................... 17 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
................................................................................TAAAGTAAATAGTCTGATTG...................................................................................................................................................... 20 3 17 0.18 3 0 0 0 0 3 0 0 0 0 0 0 0
......................................CATCTATAGCTGGTT..................................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGTAAAGTAAAAGGGT....................................................... 17 0 19 0.16 3 0 0 0 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAAGGGTATACTAGATTCGT.......................................... 22 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAAA.................................... 26 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAAA.................................... 24 0 20 0.15 3 0 0 0 1 0 1 0 1 0 0 0 0
..................................................................................................TGTTTGTTGACTTTTGTATTTTGA................................................................................................................................ 24 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................TAAAGTAAATAGTCTGATTGT..................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGTAAAGTAAAAGGGTATACTAGA............................................... 25 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................TCGTAAAGTAAAAGGGTATACTAGAT.............................................. 26 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TACTAGATTCGTTGAAAAGT.................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCGTTGAAGAGTATGTAACTACT....................... 24 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TACTAGATTCGTTGAAAAGTA................................. 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAAGGGTATACTAGATTCG........................................... 21 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGTAAAGTAAAAGGGTATACTA................................................. 23 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAAAGTAAAAGGGTATACGAGA............................................... 22 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGTAAAGTAAGAGGGTATACTAGAT.............................................. 26 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GTAGAAAGTGTGACTGT..................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................TAGTAAAGTAAAAGGGTATACGAGA............................................... 25 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTCGTAAAGTAAAAGGG........................................................ 17 0 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTT......................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAAAGT.................................. 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTG........................................ 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAAAG................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGTAAAAGGGTATACTAGA............................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................TAAAGTAAAAGGGTA...................................................... 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTATACTAGATTCGTTGAAAAGTA................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTATACTAGATTCGTTGAAAAGT.................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTAAAAGGGTATACTAGATTCGTTG........................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGTATACTAGATTCGTTGAAAA.................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCGTAAAGTAAAAGGG........................................................ 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTGGAA...................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TAAAAGGGTATACTAGA............................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATACTAGATTCGTTGAAAAGTAT................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................TATACTAGATTCGTTGAAAAGTATG............................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAAAA.................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTAGATTCGTTGAAAAGT.................................. 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTTCTTGGAGCTGCTTATGAGTGAATTTAGCGGGTTCAGTGGATATCGACCAATCATATGGTTATATTCATAATGTAGTTAATTCATTTTTCACACTAACAAAAAACTGTAAACATAAAGCTCCGTTTTTTTTTTGAGATTATTCCTCATGCATACTAACTTAACAATATCGGCTACGAGCATTTCATTTTCCCATATGATCTAAGCAACTTTTCATACAGTGATCATCTTCTTTCACAAAGGCTGGTAT
**************************************************...((..((((..(((.((((((((((((((((.(((.....(((....(((((((.....((((........))))..)))))))....))).....)))...)))))))..))).......)))))).))).........))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 GSM343915
embryo
.....................................AGTGGATATCGACCAATCA.................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................AGTTAATTCATTGTTC.............................................................................................................................................................. 16 1 5 1.00 5 0 3 0 0 2 0 0 0 0
................................................ACCAATGATATGGTTATAT....................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...CTTGGAGCTGCTTAT........................................................................................................................................................................................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................AGTTAATTCATTGTTCC............................................................................................................................................................. 17 2 20 0.55 11 0 11 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATTTTCCCATATGATCTAAGCAACTTT..................................... 27 0 20 0.40 8 0 0 0 0 4 4 0 0 0
....................................................................................................AAAAAACTGTAAACCTA..................................................................................................................................... 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TTTTCCCATATGATCTAAGCAACTTT..................................... 26 0 20 0.25 5 4 0 0 0 1 0 0 0 0
......................................................................................................................................TGAGATTATTCCACCTG................................................................................................... 17 2 6 0.17 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TACGAGCATCTCATTTTCCCATATGAT................................................. 27 1 7 0.14 1 0 0 0 0 0 0 1 0 0
................................GGTTAACTGGATATCGAC........................................................................................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0
............................................................................AGTTAATTCATTGTTCCCG........................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATGATCTAAGCAACTTTTCATACA.............................. 25 0 20 0.10 2 0 0 0 0 0 0 0 2 0
........................................................................................................................................................................................TCATTTTCCCATATGATCTAAGCAACTTT..................................... 29 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TCACAAAGGCTGGTAT 16 0 14 0.07 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................ATCTGATCTAAGCAACTTTTCATAATG............................. 27 3 15 0.07 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTCCCATATGATCTAAGCAACTTT..................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................GATCTAAGCAACTTTTCATAC............................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................TTTCCCATATGATCTAAGCAA......................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCCCATATGATCTAAGCAACTTTT.................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3185534-3185783 + dsi_3027 CAAGAACCTCG------ACGAATACTCACTTA-AATCGCCCA------------------AGTCACCTATAGCT--GGTTAGTATA--------------------------------------------------------------CCAATATAAGTATTACATCAATTAAGTAAA---------AAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTTTTTGACATTTGTATTTCGAGGCAAAAAA---AAAACT-----------------------------C----------------------------------TAATAAGGAGTACGTATGA--------------------------------TTGAATTGTTATAGCCGATGCTCGTA------AAGT-AAAAGGGTATACTA----GATTCGTTG-------AAAAGTATGTCACTAGTAGAAGAAAGTGTTTCCGACCATA
droSec2 scaffold_109:29397-29630 + CAAGAACCTCG------ACGAATACTCACTTA-AATCGCCCA------------------AGTCACCTATAGCT--GGTTAGTATA--------------------------------------------------------------CCAATTTAAGTATTACATCAATTAATTATA---------AAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTTTTTGACATTTGTATTTCGAGGCAAAAAA----AAACT-----------------------------C----------------------------------AAATAAGGAGTACGTATGA--------------------------------TTGTATACATATA-----------C----------A-ATCTATGCATACTA----GATTCGTTG-------AAAAGTATGTCACTAGTAGAAGAAAGTGTTTCCGACCATA
dm3 chrXHet:67381-67582 - CAAGAACCTCG------ATGAATACTCACTTA-AATCGCCCA------------------AGTCACCTATAGCT--GGTTAGTATA--------------------------------------------------------------CCAATTTAAGTATGACAGCAATTAAGTATAA--------CAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTGTTTGATATTTGTATTTCG------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAGA---GAAGTAAGT-AACAGGGTATACTA----GATTCGTTG-------AAAAGTATGTAAGAGGTAGAAGAAAGTGTTTCCGATCATA
droEre2 scaffold_4784:155903-156093 + ACCTAT----------------------------------------------------------------AGTCC-AGCT--------------------------------------------------------------------------------------------------------------------------------------------CT-T-----AAACCTA--CAATCC--------TGCTTCAATAGGAGT-------------------------ATGATTAATTTAGAAAAATTCAATATAG---------------------------------------------------------------TGAAATAAAGCAAA----------AA-------------GGTATATA------------------------TAGACTTGATATACCCGTTACTGATA------GAGT-AAAAGGGTATACTA----GATTCGTTG-------GAAAGTATGTAACAGGCAGAAGGAAACGTTTCCGACCATA
droYak3 3R:24953498-24953726 - TCG--------------TCGACAATTCGCTGA-A---GCCCA------------------TTCAAACTTCGTCT--CGCTTACAGA--------------------------------------------------------------AAAATGTAA---TTTCACCAACCCAAAAAT---------AGGTGCAA-------------------------------------------------------------------------------AACTCT-----------------CGTCTGTTGGTGCTTG--------------AAAAT-GAAATTCTTGCGAG----------------------------------------TGGG-----G-GAA-----------------ATAA--------------------------------AAGCGTAATTATACCCGTTACTCGTA------GAGT-AAAAGGGTATACTA----GATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATA
droEug1 scf7180000409759:682791-682990 - CCTGTA-----------------------------------------------------------------GTTTAAGTTACTATA--------------------------------------------------------------CAATTAAAAATTTTACTTT--------------------------------------------------------TAGCTTAGATCTAAATTATGTCTCTATTTTGC-------------------------------------TTGATTTTTTCTTG-----------------------------------------------------------------------------TTAATTCT-----A-GTA-----------------ATAAAG---ACA------------------------TGCACTTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATACTA----GATTCGTTG-------AAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTA
droBia1 scf7180000302405:34145-34349 + TATAATTTGT-TTTTAT----ATTCTTAATATAAAAA--CTAAATTTATTATAATCCATAAAAAAGTTTTTGTT--GGCTAGCAAA--------------------------------------------------------------CTTGTATAACTACAATATAAATTTA-------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------AAAT------------------------------------G---------------------------ATT------AATAACTAATTATACCCGTTACTCGTA------GAGT-AAAAGGGTATACTA----GATTCGTCA-------GAAAGAATGTAACAAGTAGAAGAAAGCGTTTCCGACCCTA
droTak1 scf7180000415862:427911-428121 - CATTATTTTT-CAATGA----ACAATTA---A-AATAGCCTTGATCAATTATATTTCTCAAAACAAATAAGGTC--ATTTAAATAA--------------------------------------------------------------CTTATTTAAGTAT---------------------------------------------------------------------------------------------------------------------------------------------CTGAAAGTATG--------------AA------------------------------------------------------------------------------AA-------------G--AAATATATAATAA---------------AAGGTATTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATATTA----GATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTA
droEle1 scf7180000491027:584928-585122 - ATATAA-------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCATATCAAAAAAGCATAAGACAAAAAATGTATTATTGTATATGTTGCAGTTG---TTTTTT-T-----AGCTACA--AGATTT---------------------------------------------------------------------------------------------CT-----------------------------C----------------------------------ATTT---GAGTTTATATTA--------------------------CTT--TGAAATTTTGAAAAAACGTTACTCGTA------AAGT-AAAATAATATATTA----TATTCGTTC-------AAAAGTATGTAA---GCAGAAGAAAGATTTTCCGACCCTA
droRho1 scf7180000777760:34878-35124 + TAGGAGTCCCA------TAAAGCCTTCATTTT-GATTTGCTA------------------ACTCAAATGAAATT--GGGTGGTAA---------------------------------------------------------------CTGTAATTAGTCTTCTTTAAATAACTTTAA---------CTGCATCATTGGTCTTGTTGAAATAC---ACATCT-T-----CAATCTA--AGATTT-----------------------AGCTTA------------------------------------------------------------------------------------------------------------------------------------ATATATATAATTT-----------------------------------TTAATATTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATATTG----TATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTA
droFic1 scf7180000453495:209522-209823 - CAAGAACCTCG------ACGAGTACCCACTTA-AGTCGCCAA------------------AGTCACCCATATCT--GGTTAGTATA--CCCAATTGCAGTATTACTACTTTGATCTCACCAACAGACTCGATTTTGCAACTCAATGTTTTCAATAGTTTTCTGATCTTA-TTGACACA---------A----------------------------GTATGT-T-----AAACCCT--ACATTT-TCTATTTCAT-------------------------------------TTGTA---------------------------------------------CTATCCCCGTTTT---------------GTTTTTTAAT-G-TA----------------------------------------------------A---------------ACCATATTCTTGTACCCTTTACTCGGA------AAGT-AAAACTATATACTGTAGGTATTTGTTG-------AAAAGTATGTGACA-------GGAATCACTGGTGACCCTA
droKik1 scf7180000301868:8985-9155 + TTTCGTC------------AAGG---------AAATACCCAG----------------------------------------------------------------------------------------------------------------------------------------------------TGTGTT-----------------------------------------------------------------------------------------------------GGTT---CCACAGCTGAAGTCCGAGCGAAAAAA---AACA-----------------------CTAGAACAGGTCTAT-GAAATTTGA--ATCA-----G--------------------------------------------------------CGTACATTTTTATACCCTT--------------------GCAGGGTATTATA----ATTTTAGTC-------AGAAGTTTGCAACTCAGTGAAGGAGACGTTTCCGACCCTA
droAna3 scaffold_13099:1429412-1429604 - GTAAACTTTT-GT-------------------AAGTTTCAT-----------------------------ATAT--GAGTAAAATT--CATAGGTATTGTATTGTAGCTTTTATATAA----------------------------------------------------AAGAAA-AA--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAGAATATTGAT-GAAGCCTTA-----------------------A--GAA------------------------------AAC----TG-TTCAAT-------TCCCGTACCCGTA------GAGT-ACAAGAGTATGTTG----TATTTGTGT-------GAATGTATGTATCATGAAGAATGAAGAATCTCCGACCATA
droBip1 scf7180000396373:1761-2009 + CTTGATTTTT-CG-------------------AAATTACCTT------------------T--------GCGGT--GGACATGATT--------------------------------------------------------------TCTAAAAAAGTACTAATCCAATCAACTCCA---------AATTTTGAC-------------------------------------------------CACTTATTT-----------------------------------------A-TTTTTTTGAAAACTCCTTTTTTAAAGCATAAAAATCGAAAATCTTATACC----------------------------------------T-----TGAA----------AA-------------AGTACATTTTTTGTTAAAAC---------CGTCGCTATTTTTATACCCTTG-----C-------------AGAGGGTATTATA----ATTTTGTCC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTA
dp5 Unknown_singleton_881:17208-17444 - TCAACAC--------------ATATGTAGCTA-TATCCCCAA------------ACCA--TAACGGCCATAATT--GGATAGCGAA--------------------------------------------------------------CCGACATTGTACATACATAAATCAGTCAAA---------AAT-T---------------------TCA------T----------------------------------------------------------------------------------AA------------------------------------------------AGCCCATAAACT-TTATTAT-AAAGGTTA------TTA--------TT--ATTAGGATTATATT-----------------------------------TGGTTTTGTTATACCCGATACTCAAT----GTGAGT-ATTGTGG------A----GATTTGTGGTGAAAATAGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCA
droPer2 scaffold_1313:3625-3872 - CTTCAAC------------ACATATGTAGCTA-TACCCCCAA------------ACCA--TAATGGCCATAATT--GGATAGCGAA--------------------------------------------------------------CCGACATTGTACATACATAAATCAGGTTAA---------AAATT---------------------TCA------T---------------------------------------------------------------------------------AAA------------------------------------------------AGCCCATAAACT-TTATTAT-AAAGGGTT------TTA--------TT--ATTAGGATTATATT----------------------------------TGGGTTTTTTTATACCCGATACTCAAA----ATGAGT-ATTGGGGTATATTA----GATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCA
droWil2 scf2_1100000004947:863286-863511 - AGAG--CCACG------TCGACACTTT--GTA-AATTGCCGT------------------CGAGTTCTGTAGTT--AGTTATTGTATGCA----------------------------------------------------------TAGTTATTGTATGCATATAGATTGGGAAAA---------AAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATT-TCGTTTTCGAGA-A-GA--ATTA-----GCGGCTCGATCGA--GTTATGTT---------------------------T------AGGCAATTTTTATACCCTTG-----C----------A-AAAAGGGTATATTA----ATTTTGGTC-------AAAAGTGTGCAACGCATAGAAGGAAGCATCCCCGACCATA
droVir3 scaffold_10322:312361-312561 - TGTTGTCTG------------AA--------------T-----------------------GAAATCTATAACT--C-----------------------------------------------------------------AATTGTTCTATTTTGTATGTATTTTAA-CAGACAAA---------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAACT-TAGTCAT-GAAGTTTAA-----------------------A--GTT------------------------------ATT----TGTTTCCATTTTTATACCCTGAACCTATTAAAAATGGGT-ATAAGGGTATATTG----TATTTGTGCAAAATCCAAATGTATGTAACAGGCTGAAGAAAGCATCTCCGACCCCA
droMoj3 scaffold_6500:30560009-30560248 - TTAATTT--G------------------CTGG-G---TACAC------------------CT----ATTAATCT--GGCCAGCAAA----------------------------------------------------------------AATGTGAGTTTTTTGTGAAGTATGCCAA---------AATT----------------------------------------------------A-----------------------TGCTAAAAATTATTATTTTTTAAGCTTGTT---------------------------------------------ATACCCTGAACCC---------------ATTTTCAATG-G-TAA-ATCA-----G-GGT-----------------ATAA--------------------------------TGGTTTTGTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATG----GTTTTGTTG-------AAATGTATATAACAGGCAGAAGGAGGCGTGGCAGACCCCA
droGri2 scaffold_15110:18775043-18775213 - ACATTAA------------------------------------------------------------------------------A--------------------------------------------------------------TAAATATAAATATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATATATAATTAT----------AA-------------AGAAAATATATAATTAAAAACGATTACTTCGACTATATTATTATACCCTAAGCCCATTAAAAATGAGTAAAAAGGGTATAATG----GTTTTGTGC-------AAATGTATGTAACAGGCAGAAGAAAGCATCTCCGACCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAGAACCTCG------ACGAATACTCACTTA-AATCGCCCA------------------AGTCACCTATAGCT--GGTTAGTATA--------------------------------------------------------------CCAATATAAGTATTACATCAATTAAGTAAA---------AAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTTTTTGACATTTGTATTTCGAGGCAAAAAA---AAAACT-----------------------------C----------------------------------TAATAAGGAGTACGTATGA--------------------------------TTGAATTGTTATAGCCGATGCTCGTA------AAGT-AAAAGGGTATACTA----GATTCGTTG-------AAAAGTATGTCACTAGTAGAAGAAAGTGTTTCCGACCATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAAGGGTATACTA----GATTCGTTG-------AA......................................262024.85497000000314183000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTCACTAGTAGA....................2713.00301000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTA----GATTCGTTG-------AAAAGTA.................................27202.1042000000042000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAAAGTATGTCACTAGTAGAAGAA................2612.00200000000001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACTAGTAGAAGAAAGTGTT..........2312.00200000000000002000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTA----GATTCGTTG-------AAAAG...................................26201.60320000001616000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AAAAGGGTATACTA----GATTCGTTG-------AA......................................27201.05210000001110000000000
......................................CCCA------------------AGTCACCTATAGCT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGCCGATGCTCGTA------AAGT-AAAAGA....................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGATGCTCGTA------AAGT-AAAAGA....................................................................2611.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCACTAGTAGAAGAAAGTGTA..........2411.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTCACTAGTAGAAGAAAG..............2611.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTCACTAGTAGAAGAAAGTGTT..........2611.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCACTAGTAGAAGAAAGTGTT..........2411.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTA----GATTCGTTG-------AA......................................24200.751500000008007000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAAGGGTATACTA----GATTCGTTG-------AAAA....................................28200.501000000055000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-AAAAGGGTATACTA----GATTCGTTG-------AA......................................28200.501000000090000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTA----GATTCGTTG-------AAAAG...................................24200.5010000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTA----GATTCGT.................................................21200.40800000000008000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTA----GATTCGTTG-------AAA.....................................25200.30600000060000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------AAGT-AAAAGGGTATACTA----G.......................................................24110.27300000000003000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AAAAGGGTATACTA----GATTCGTTG-------A.......................................26200.25500000032000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTA----GATTCGTTG-------AAA.....................................26200.25500000050000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-AAAAGGGTATACTA----GATTCGTTG-------A.......................................27200.25500000050000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTA----GATTCGTTG-------AAAAG...................................21200.20410100020000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------AA......................................17200.20400000000004000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------AAGT-AAAAGGGT..................................................................17190.16300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAAGGGTATACTA----GATTCGT.................................................22200.15300000000003000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTA----GATTCGTTG-------AAAA....................................26200.15300000030000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTA----GATTCGTTG-------AAAA....................................24200.15300000000011010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------AAGT-AAAAGGGTATACTA----GA......................................................2590.11100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------AAGT-AAAAGGGTATACTA----GAT.....................................................2690.11100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTA----GATTCGTTG-------AAAAGT..................................20200.10200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTA----GATTCGTTG-------AAAAGTA.................................21200.10200000002000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAAGGGTATACTA----GATTCG..................................................21200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------AAGT-AAAAGGGTATACTA----........................................................23120.08100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTA------AAGT-AAAAGGG...................................................................17190.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-AAAAGGGTATACTA----GATTCGTT................................................25200.05100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTA----GATTCGTTG-------AAAAGT..................................28200.05100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-AAAAGGGTATACTA----GATTCGTTG-------........................................26200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTA----GATTCGTTG-------AAAAG...................................25200.05100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------AAGT-AAAAGGGTATACTA----GA......................................................21200.05100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------AAGT-AAAAGGGTA.................................................................15200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTA----GATTCGTTG-------AAAAGTA.................................24200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTA----GATTCGTTG-------AAAAGT..................................24200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AAAAGGGTATACTA----GATTCGTTG-------........................................25200.05100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTA----GATTCGTTG-------AAAA....................................23200.05100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------AAGT-AAAAGGG...................................................................16200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAAAGGGTATACTA----GA......................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------AAAAGTAT................................23200.05100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTA----GATTCGTTG-------AAAAGTATG...............................25200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTA----GATTCGTTG-------AAAA....................................25200.05100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA----GATTCGTTG-------AAAAGT..................................19200.05110000000000000000
droSec2
CAAGAACCTCG------ACGAATACTCACTTA-AATCGCCCA------------------AGTCACCTATAGCT--GGTTAGTATA--------------------------------------------------------------CCAATTTAAGTATTACATCAATTAATTATA---------AAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTTTTTGACATTTGTATTTCGAGGCAAAAAA----AAACT-----------------------------C----------------------------------AAATAAGGAGTACGTATGA--------------------------------TTGTATACATATA-----------C----------A-ATCTATGCATACTA----GATTCGTTG-------AAAAGTATGTCACTAGTAGAAGAAAGTGTTTCCGACCATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.AAGAACCTCG------ACGAATACTCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------AAAAGT..................................21200.0511000
dm3
CAAGAACCTCG------ATGAATACTCACTTA-AATCGCCCA------------------AGTCACCTATAGCT--GGTTAGTATA--------------------------------------------------------------CCAATTTAAGTATGACAGCAATTAAGTATAA--------CAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTGTTTGATATTTGTATTTCG------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAGA---GAAGTAAGT-AACAGGGTATACTA----GATTCGTTG-------AAAAGTATGTAAGAGGTAGAAGAAAGTGTTTCCGATCATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAGAGGTA......................2515.0050000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAGAGGT.......................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAAGAGGTA......................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAGAGGTAGA....................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAAGAGGTAGAA...................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................AGTATAA--------CAGTGTGAT-----------------------------------------------------------------------------------------------------TGTTG.......................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAAGAGGTAGAA...................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTA-AATCGCCCA------------------AGTCACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAAGAGGTAGAAGA.................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAGAGG........................2341.2550000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGGTATACTA----GATTCG..................................................2131.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGGTAGAAGAAAGTGT...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACTTA-AATCGCCCA------------------AGTCACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAAGAGGTAGAAG..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGAAAGTGTTTCCGATCATT2411.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TA-AATCGCCCA------------------AGTCACCTATAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTA-AATCGCCCA------------------AGTCACCTATAGCT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATGAATACTCACTTA-AATCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAACCTCG------ATGAATACTCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CCA------------------AGTCACCTATAGCT--GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGAGGTAGAAGAAAGTG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................CGCCCA------------------AGTCACCTATAGCT--GG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CCA------------------AGTCACCTATAGCT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAAGAACCTCG------ATGAATACTCACTTA-AA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGAATACTCACTTA-AATCGCCCA------------------AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCGCCCA------------------AGTCACCTATAGCT--GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAAGAGGTAGAAGAAAGTG............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TTCG------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAGA---GAAGTAAG............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
CAAGAACCTCG------ATGAATACTCACTTA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGTGTTTCCGATCA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAAGAGGTAGAAGAA................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGAATACTCACTTA-AATCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAGAGGTC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................CGCCCA------------------AGTCACCTATAGCT--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGTTTGATATTTGTATTTCG------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAGA---....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAACCTCG------ATGAATACTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...GAACCTCG------ATGAATACTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........TCG------ATGAATACTCACTTA-AATCGCCCA------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTA----GATTCGTTG-------AAAAG...................................21200.801600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000004000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA----GATTCGTTG-------AAAAGTATG...............................21200.701400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAAGAGGTAGAAGAAAG..............2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAAGAGGTA......................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAGAGGTAT.....................2620.5010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAAGAGG........................2150.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTG-------AAAAGTATGTAAG...........................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA----GATTCGTTG-------AAAAGTAT................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------AAAAGT..................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTA----GATTCGTTG-------AAAAGTATG...............................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................ACTTA-AATCGCCCA------------------AGTCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTA----GATTCGTTG-------AAAAG...................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA----GATTCGTTG-------AAAAGTAT................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTA----GATTCGTTG-------AAAAGTATG...............................23200.0510000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GATTCGTTG-------AAAAGTATG...............................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------AAAAGTATG...............................24200.0510000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GATTCGTTG-------AAAAGTATGTA.............................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------AAAAGTA.................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTA----GATTCGTTG-------AAAAGTA.................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTA----GATTCGTTG-------A.......................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTAGAAGAAAGTCGA..........19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTA----GATTCGTTG-------AAAA....................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTA----GATTCGTTG-------AAAAGTATGT..............................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCTAT----------------------------------------------------------------AGTCC-AGCT--------------------------------------------------------------------------------------------------------------------------------------------CT-T-----AAACCTA--CAATCC--------TGCTTCAATAGGAGT-------------------------ATGATTAATTTAGAAAAATTCAATATAG---------------------------------------------------------------TGAAATAAAGCAAA----------AA-------------GGTATATA------------------------TAGACTTGATATACCCGTTACTGATA------GAGT-AAAAGGGTATACTA----GATTCGTTG-------GAAAGTATGTAACAGGCAGAAGGAAACGTTTCCGACCATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------------------------TAGACTTGATATACCCGT.............................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGT-AAAAGGGTATACTA----GATTCGT.................................................27200.1022000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTA----GATTCGTTG-------GAAAG...................................20100.1010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTA----GATTCGTT................................................22200.0510000010
droYak3
TCG--------------TCGACAATTCGCTGA-A---GCCCA------------------TTCAAACTTCGTCT--CGCTTACAGA--------------------------------------------------------------AAAATGTAA---TTTCACCAACCCAAAAAT---------AGGTGCAA-------------------------------------------------------------------------------AACTCT-----------------CGTCTGTTGGTGCTTG--------------AAAAT-GAAATTCTTGCGAG----------------------------------------TGGG-----G-GAA-----------------ATAA--------------------------------AAGCGTAATTATACCCGTTACTCGTA------GAGT-AAAAGGGTATACTA----GATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGT-AAAAGGGTATACTA----GATT....................................................27200.8016000000000016
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA----GATTCGTTG-------AAAAGTATG...............................21200.45909000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCCGA.....28200.30606000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATACCCGTTACTCGTA------GAG............................................................................24200.15303000000000
droEug1
CCTGTA-----------------------------------------------------------------GTTTAAGTTACTATA--------------------------------------------------------------CAATTAAAAATTTTACTTT--------------------------------------------------------TAGCTTAGATCTAAATTATGTCTCTATTTTGC-------------------------------------TTGATTTTTTCTTG-----------------------------------------------------------------------------TTAATTCT-----A-GTA-----------------ATAAAG---ACA------------------------TGCACTTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATACTA----GATTCGTTG-------AAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTASizeHit CountTotal NormTotal
No Reads
droBia1
TATAATTTGT-TTTTAT----ATTCTTAATATAAAAA--CTAAATTTATTATAATCCATAAAAAAGTTTTTGTT--GGCTAGCAAA--------------------------------------------------------------CTTGTATAACTACAATATAAATTTA-------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------AAAT------------------------------------G---------------------------ATT------AATAACTAATTATACCCGTTACTCGTA------GAGT-AAAAGGGTATACTA----GATTCGTCA-------GAAAGAATGTAACAAGTAGAAGAAAGCGTTTCCGACCCTASizeHit CountTotal NormTotal
No Reads
droTak1
CATTATTTTT-CAATGA----ACAATTA---A-AATAGCCTTGATCAATTATATTTCTCAAAACAAATAAGGTC--ATTTAAATAA--------------------------------------------------------------CTTATTTAAGTAT---------------------------------------------------------------------------------------------------------------------------------------------CTGAAAGTATG--------------AA------------------------------------------------------------------------------AA-------------G--AAATATATAATAA---------------AAGGTATTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATATTA----GATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTASizeHit CountTotal NormTotal
No Reads
droEle1
ATATAA-------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCATATCAAAAAAGCATAAGACAAAAAATGTATTATTGTATATGTTGCAGTTG---TTTTTT-T-----AGCTACA--AGATTT---------------------------------------------------------------------------------------------CT-----------------------------C----------------------------------ATTT---GAGTTTATATTA--------------------------CTT--TGAAATTTTGAAAAAACGTTACTCGTA------AAGT-AAAATAATATATTA----TATTCGTTC-------AAAAGTATGTAA---GCAGAAGAAAGATTTTCCGACCCTASizeHit CountTotal NormTotal
No Reads
droRho1
TAGGAGTCCCA------TAAAGCCTTCATTTT-GATTTGCTA------------------ACTCAAATGAAATT--GGGTGGTAA---------------------------------------------------------------CTGTAATTAGTCTTCTTTAAATAACTTTAA---------CTGCATCATTGGTCTTGTTGAAATAC---ACATCT-T-----CAATCTA--AGATTT-----------------------AGCTTA------------------------------------------------------------------------------------------------------------------------------------ATATATATAATTT-----------------------------------TTAATATTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTATATTG----TATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTASizeHit CountTotal NormTotal
No Reads
droFic1
CAAGAACCTCG------ACGAGTACCCACTTA-AGTCGCCAA------------------AGTCACCCATATCT--GGTTAGTATA--CCCAATTGCAGTATTACTACTTTGATCTCACCAACAGACTCGATTTTGCAACTCAATGTTTTCAATAGTTTTCTGATCTTA-TTGACACA---------A----------------------------GTATGT-T-----AAACCCT--ACATTT-TCTATTTCAT-------------------------------------TTGTA---------------------------------------------CTATCCCCGTTTT---------------GTTTTTTAAT-G-TA----------------------------------------------------A---------------ACCATATTCTTGTACCCTTTACTCGGA------AAGT-AAAACTATATACTGTAGGTATTTGTTG-------AAAAGTATGTGACA-------GGAATCACTGGTGACCCTASizeHit CountTotal NormTotal
No Reads
droKik1
TTTCGTC------------AAGG---------AAATACCCAG----------------------------------------------------------------------------------------------------------------------------------------------------TGTGTT-----------------------------------------------------------------------------------------------------GGTT---CCACAGCTGAAGTCCGAGCGAAAAAA---AACA-----------------------CTAGAACAGGTCTAT-GAAATTTGA--ATCA-----G--------------------------------------------------------CGTACATTTTTATACCCTT--------------------GCAGGGTATTATA----ATTTTAGTC-------AGAAGTTTGCAACTCAGTGAAGGAGACGTTTCCGACCCTASizeHit CountTotal NormTotal
No Reads
droAna3
GTAAACTTTT-GT-------------------AAGTTTCAT-----------------------------ATAT--GAGTAAAATT--CATAGGTATTGTATTGTAGCTTTTATATAA----------------------------------------------------AAGAAA-AA--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAGAATATTGAT-GAAGCCTTA-----------------------A--GAA------------------------------AAC----TG-TTCAAT-------TCCCGTACCCGTA------GAGT-ACAAGAGTATGTTG----TATTTGTGT-------GAATGTATGTATCATGAAGAATGAAGAATCTCCGACCATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTTGATTTTT-CG-------------------AAATTACCTT------------------T--------GCGGT--GGACATGATT--------------------------------------------------------------TCTAAAAAAGTACTAATCCAATCAACTCCA---------AATTTTGAC-------------------------------------------------CACTTATTT-----------------------------------------A-TTTTTTTGAAAACTCCTTTTTTAAAGCATAAAAATCGAAAATCTTATACC----------------------------------------T-----TGAA----------AA-------------AGTACATTTTTTGTTAAAAC---------CGTCGCTATTTTTATACCCTTG-----C-------------AGAGGGTATTATA----ATTTTGTCC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTASizeHit CountTotal NormTotal
No Reads
dp5
TCAACAC--------------ATATGTAGCTA-TATCCCCAA------------ACCA--TAACGGCCATAATT--GGATAGCGAA--------------------------------------------------------------CCGACATTGTACATACATAAATCAGTCAAA---------AAT-T---------------------TCA------T----------------------------------------------------------------------------------AA------------------------------------------------AGCCCATAAACT-TTATTAT-AAAGGTTA------TTA--------TT--ATTAGGATTATATT-----------------------------------TGGTTTTGTTATACCCGATACTCAAT----GTGAGT-ATTGTGG------A----GATTTGTGGTGAAAATAGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCC.24200.4080800000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTGT..............................24140.3650100004000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTG...............................23140.3650200000120
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTGTA.............................25130.3140100001020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT----GTGAGT-ATTGTGG------A----GATTTGTGG...............................................2750.2010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGGATTATATT-----------------------------------TGGTTTTG.......................................................................................................2260.1710100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATGTGTGTAACGTCCAGAAGG.................24200.1530300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGT................................22140.1420100001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTG.................................21140.1420101000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCG......19200.1020000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAATAGATGTGTGTA.............................21130.0810000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATAGATGTGTGTAA............................24130.0810000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTGTAAC...........................27130.0810000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTGTAACG..........................28130.0810000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATAGATGTGTGTA.............................23130.0810000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTGTAA............................26130.0810100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGT..................................20140.0710000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTGTAACC..........................28160.0610000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCG......20200.0510000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGATGTGTT...............................23200.0510000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATAGAA....................................18200.0510000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGTGTAACGTCCAGAAGGAA...............25200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTCCGACCC..28200.0510100000000
droPer2
CTTCAAC------------ACATATGTAGCTA-TACCCCCAA------------ACCA--TAATGGCCATAATT--GGATAGCGAA--------------------------------------------------------------CCGACATTGTACATACATAAATCAGGTTAA---------AAATT---------------------TCA------T---------------------------------------------------------------------------------AAA------------------------------------------------AGCCCATAAACT-TTATTAT-AAAGGGTT------TTA--------TT--ATTAGGATTATATT----------------------------------TGGGTTTTTTTATACCCGATACTCAAA----ATGAGT-ATTGGGGTATATTA----GATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGATGTGTGTAAC...........................20200.102000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTA----GATTTGTGGTGAAAATGGA.....................................24200.102020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATGTGTGTAACGTCC.......................21200.051000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----GATTTGTGGTGAAAATGG......................................20200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGGTATATTA----GATTTGTGGTG.............................................24200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGT..................................19200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGTAA............................25200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GATTTGTGGTGAAAATGGATGTGT................................25200.051000001
droWil2
AGAG--CCACG------TCGACACTTT--GTA-AATTGCCGT------------------CGAGTTCTGTAGTT--AGTTATTGTATGCA----------------------------------------------------------TAGTTATTGTATGCATATAGATTGGGAAAA---------AAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATT-TCGTTTTCGAGA-A-GA--ATTA-----GCGGCTCGATCGA--GTTATGTT---------------------------T------AGGCAATTTTTATACCCTTG-----C----------A-AAAAGGGTATATTA----ATTTTGGTC-------AAAAGTGTGCAACGCATAGAAGGAAGCATCCCCGACCATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................TATTGTATGCATATAGATTGGGAAAA---------A.........................................................................................................................................................................................................................................................................................................................................................................................2729.0018010170
........................................................................................................................................................TATTGTATGCATATAGATTGGGAAAA---------AA........................................................................................................................................................................................................................................................................................................................................................................................2827.0014030110
........................................................................................................................................................TATTGTATGCATATAGATTGGGAAAA---------..........................................................................................................................................................................................................................................................................................................................................................................................2624.00803050
........................................................................................................................................................TATTGTATGCATATAGATTGGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................2423.00601050
........................................................................................................................................................TATTGTATGCATATAGATTGGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................2522.50500050
...........................................................................................................................................................TGTATGCATATAGATTGGGAAAA---------AA........................................................................................................................................................................................................................................................................................................................................................................................2522.00400130
......................................................................................................................................................GTTATTGTATGCATATAGATTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
...............................................................................TATTGTATGCA----------------------------------------------------------TAGTTATTGTATGCATA................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
........................................................................................................................................................TATTGTATGCATATAGATTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................2321.00200110
.................................AATTGCCGT------------------CGAGTTCTGTAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.6513130000
.........................TT--GTA-AATTGCCGT------------------CGAGTTCTGTAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.5010010000
...........................................................................................................................................................TGTATGCATATAGATTGGGAAAA---------A.........................................................................................................................................................................................................................................................................................................................................................................................2420.50100010
...........................................................................................................................................................TGTATGCATATAGATTGGGAAAA---------ATG.......................................................................................................................................................................................................................................................................................................................................................................................2620.50100010
............................................................................................................................................................GTATGCATATAGATTGGGAAAA---------AA........................................................................................................................................................................................................................................................................................................................................................................................2420.50101000
.......................................................................................................................................................TTATTGTATGCATATAGATTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................2420.50100010
........................................................................................................................................................TATTGTATGCATATAGATTGGGAAAT---------T.........................................................................................................................................................................................................................................................................................................................................................................................2720.50100010
...................................TTGCCGT------------------CGAGTTCTGTAGTT--AGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100100
........................................................................................................................................................TATTGTATGCATATAGATTGGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................2520.50100010
...................................TTGCCGT------------------CGAGTTCTGTAGTT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.35770000
........................................................................................................................................................TATTGTATGCATATAGATT..........................................................................................................................................................................................................................................................................................................................................................................................................1930.33101000
........................................................................................................................................................TATTGTATGCATATAGATTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................2230.33101000
.......CACG------TCGACACTTT--GTA-AATTGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.30606000
..................................ATTGCCGT------------------CGAGTTCTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.20440000
........................TTT--GTA-AATTGCCGT------------------CGAGTTCTGTAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.20404000
..........................T--GTA-AATTGCCGT------------------CGAGTTCTGTAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15330000
..............................TA-AATTGCCGT------------------CGAGTTCTGTAGTT--AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.15303000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------AAAAGTGTGCAACGCATAGAAGGAAG..............27200.15300300
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAAGCATCCCCGACC...2680.13100010
.....................CACTTT--GTA-AATTGCCGT------------------CGAGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200020
..........................T--GTA-AATTGCCGT------------------CGAGTTCTGTAGTT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTC-------AAAAGTGTGCAACGCATAGA....................26200.10200020
......CCACG------TCGACACTTT--GTA-AATTGCCGT------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10220000
...G--CCACG------TCGACACTTT--GTA-AATTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10220000
.........................TT--GTA-AATTGCCGT------------------CGAGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10220000
....................ACACTTT--GTA-AATTGCCGT------------------CGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..........................T--GTA-AATTGCCGT------------------CGAGTTCTGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
....................................TGCCGT------------------CGAGTTCTGTAGTT--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.........................TT--GTA-AATTGCCGT------------------CGAGTTCTGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
........ACG------TCGACACTTT--GTA-AATTGCCGT------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
......CCACG------TCGACACTTT--GTA-AATTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC-------AAAAGTGTGCAACGC.........................20200.05101000
.GAG--CCACG------TCGACACTTT--G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
droVir3
TGTTGTCTG------------AA--------------T-----------------------GAAATCTATAACT--C-----------------------------------------------------------------AATTGTTCTATTTTGTATGTATTTTAA-CAGACAAA---------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAACT-TAGTCAT-GAAGTTTAA-----------------------A--GTT------------------------------ATT----TGTTTCCATTTTTATACCCTGAACCTATTAAAAATGGGT-ATAAGGGTATATTG----TATTTGTGCAAAATCCAAATGTATGTAACAGGCTGAAGAAAGCATCTCCGACCCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCTGAAG..................2581.2510001000000000000000000001011110011010010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCTGAAGAA................2711.001000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCTGAAGAAAG..............2211.001000000000000000000000000000000100000000000000000000000000000000
...TGTCTG------------AA--------------T-----------------------GAAATCTATAACT--C-----------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTATATTG----........................................................26200.60120000000000000100000000000000000110000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAAAAATGGGT-ATAAGGG...................................................................21200.153000000000020000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCTGA....................2390.111000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGG........................19200.102000000000000000000000000000000200000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATGGGT-ATAAGGGT..................................................................19200.102000000000000000000000000000000000000000000000000000000000000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAAAAATGGGT-ATAAGG....................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTATTAAAAATGGGT-ATAAGGGT..................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATTAAAAATGGGT-ATAAGGGTA.................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
TTAATTT--G------------------CTGG-G---TACAC------------------CT----ATTAATCT--GGCCAGCAAA----------------------------------------------------------------AATGTGAGTTTTTTGTGAAGTATGCCAA---------AATT----------------------------------------------------A-----------------------TGCTAAAAATTATTATTTTTTAAGCTTGTT---------------------------------------------ATACCCTGAACCC---------------ATTTTCAATG-G-TAA-ATCA-----G-GGT-----------------ATAA--------------------------------TGGTTTTGTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATG----GTTTTGTTG-------AAATGTATATAACAGGCAGAAGGAGGCGTGGCAGACCCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................TG-G-TAA-ATCA-----G-GGT-----------------ATAA--------------------------------TGGTT..........................................................................................................2370.292100010
..........................................................................................................................................................................................................................................................................................................................................................................................TG-G-TAA-ATCA-----G-GGT-----------------ATAA--------------------------------TGGTTTTGT......................................................................................................2770.141000010
...........................................................................................................................................................................................................................................................................................................................................................................................G-G-TAA-ATCA-----G-GGT-----------------ATAA--------------------------------TGG............................................................................................................2080.131100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAATGTATATAACAGGCAGAAGG.................25200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATG----GTTTTGTTG-------AAATGTA.................................21200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAATGGGAAATCAGGGT..................................................................21200.051010000
.....................................................................................................................................................................................................................................................................................................TGTT---------------------------------------------ATACCCTGAACCC---------------ATTTT..............................................................................................................................................................................................22200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGGGAAATCAGGGTATAAT.............................................................23200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTG-------AAATGTATATAACAGG........................22200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................TTTTCAATG-G-TAA-ATCA-----G-GGT-----------------ATAA--------------------------------TTT............................................................................................................28200.051100000
droGri2
ACATTAA------------------------------------------------------------------------------A--------------------------------------------------------------TAAATATAAATATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATATATAATTAT----------AA-------------AGAAAATATATAATTAAAAACGATTACTTCGACTATATTATTATACCCTAAGCCCATTAAAAATGAGTAAAAAGGGTATAATG----GTTTTGTGC-------AAATGTATGTAACAGGCAGAAGAAAGCATCTCCGACCCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:49 AM