ID:

dsi_30253

Coordinate:

3r:10908358-10908507 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGCCATGTGCCGGGGTTATCAATCGTTCATTATTCGCAAATTCATTTAGAGGTGATCATTCTAGCTATTCAGAGTCTTTACATTAAAATTTAGGATTTTCTAACTTTCATTTAACATTCCGCCAAGATGATCGCATATCTGAAAGTGATCTCGCACAGCTCCATTATTCACTACTAATTTTATGCATTCTTTTCTTGCAGGTTGGTGACTTTTCCATATCATAATCGTAAGTTTCGAGCCAAGTTTCTGC ************************************************(((((.......((((....((((((((.............))))))))..........................((.((((((..........))))))))....)))).......)))))..........((((.........)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR1275487 Male larvae
........................................................................................................................................................................GACTACTGATTTTAGGCATTCT............................................................	22	3	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................TGCATTCTTTTCTTGCAGGTTGGTGAC.........................................	27	0	1	1.00	1	0	1	0	0	0
........GCCGGGGTACTCAATCG.................................................................................................................................................................................................................................	17	2	4	0.25	1	0	0	0	1	0
..................................................................................................................................................................................................TTGCAGGTTGGAGTCTTT......................................	18	2	5	0.20	1	0	0	0	0	1
............................................TTTAGACGTGATGATTCGA...........................................................................................................................................................................................	19	3	8	0.13	1	0	0	1	0	0
..................................................................................................................................................GATCCCGCATAGCTCCA.......................................................................................	17	2	8	0.13	1	0	0	1	0	0
...................................................................TTGGAAGTCTTTACATTAAAA..................................................................................................................................................................	21	3	9	0.11	1	0	1	0	0	0
...............................................................................................................................................................................................TTCTTGCAGGTTGCTGA..........................................	17	1	11	0.09	1	0	0	1	0	0
................................................................................................................................................................................................TCTTGCAGACTGGTGACCT.......................................	19	3	12	0.08	1	1	0	0	0	0
................................................................................................................................................GGGATCTCGGACAGCTC.........................................................................................	17	2	18	0.06	1	0	0	1	0	0
................................................................................................................................................GTGATCTCGCGGAGC...........................................................................................	15	2	20	0.05	1	1	0	0	0	0
.......................................................................................ATTTGGGATTTTCTA....................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0

Anti-sense strand reads

GCGGTACACGGCCCCAATAGTTAGCAAGTAATAAGCGTTTAAGTAAATCTCCACTAGTAAGATCGATAAGTCTCAGAAATGTAATTTTAAATCCTAAAAGATTGAAAGTAAATTGTAAGGCGGTTCTACTAGCGTATAGACTTTCACTAGAGCGTGTCGAGGTAATAAGTGATGATTAAAATACGTAAGAAAAGAACGTCCAACCACTGAAAAGGTATAGTATTAGCATTCAAAGCTCGGTTCAAAGACG ************************************************(((((.......((((....((((((((.............))))))))..........................((.((((((..........))))))))....)))).......)))))..........((((.........)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553487 NRT_0-2 hours eggs
.......................................................................CTCCGAAAGGTAATTTT..................................................................................................................................................................	17	2	20	0.55	11	11	0	0	0	0
......................AGCAAGAAATAAGCGTT...................................................................................................................................................................................................................	17	1	3	0.33	1	0	1	0	0	0
.............................................................................................................AAATTGTTAGGCGGTT.............................................................................................................................	16	1	5	0.20	1	0	0	1	0	0
..GGTACAAGGCCGCAATA.......................................................................................................................................................................................................................................	17	2	6	0.17	1	1	0	0	0	0
..............................................................TCGATAAGGCTTAGAACTGT........................................................................................................................................................................	20	3	6	0.17	1	0	0	0	1	0
............................................................................................................................................................................................................................TAGTAGCATTAAAAGCTC............	18	2	7	0.14	1	1	0	0	0	0
...........................................................................................................GAAAATTGTTAGGCGGTT.............................................................................................................................	18	2	7	0.14	1	0	1	0	0	0
..............................................................................................................AATTGTTAGGCGGTT.............................................................................................................................	15	1	13	0.08	1	0	0	1	0	0
......................................................................................................................................................AGCGTGTGGAGGCAATGAG.................................................................................	19	3	13	0.08	1	0	0	0	0	1
......................................................................................................................................................AGCGTGTGGAGGCAAT....................................................................................	16	2	20	0.05	1	0	0	1	0	0

Generated: 04/24/2015 at 10:51 AM