ID:

dsi_30243

 Coordinate:

3r:229236-229437 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.7 -3.4 -3.3

Flybase annnotation

CDS [3r_229480_230184_-]; Antisense to CDS [3r_228661_229205_+]; Antisense to three_prime_UTR [3r_229206_229230_+]; Antisense to exon [3r_228661_229230_+]; three_prime_UTR [3r_229300_229479_-]; exon [3r_229300_230406_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

############################################################################################################################################################################################------------------------------------------------------------------------------------------------------------------
TCGGTTAATATGGTTATTTTGATACATATTATGTATAAAGCACCGCCAAGGTAATTTCAACATTTATAAATTAAGAACGCATAAATACATATTTCCTGGCCTTGTGTTACCTCAACCTTAACGAAATGGAAATGTGTAAACTAGATTCAATTATTGCATAAAATATTAAAATAATAATATTACTATATACATATAAGGTCCCATTGTCAATCGTATTTATCTATTTTCTTTTTTTCCAAATCGGAATCAAAGATAAGACTATAAATTACACTTCAACGGAGATCACACAAATCGAGCCTTAT
**************************************************************........(((((........((((((.............))))))........))))).........**************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR902008
ovaries
.............................................................................................................CCTCAACCTTAACGAAATGGA............................................................................................................................................................................ 21 0 1 4.00 4 0 0 2 0 0 0 2 0 0 0 0
..............................................................................................................................CGGAAATGTGTAAACTAGATT........................................................................................................................................................... 21 1 1 4.00 4 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ATCGGAATCAAAGATAAGACT.......................................... 21 0 1 3.00 3 0 0 0 0 0 0 1 0 0 2 0
................................................................................................................................................................................................................................................TCGGAATCAAAGATAAGACTATAAAT.................................... 26 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TAAGACTATAAATTACACTTCAACGGA...................... 27 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TAAGACTATAAATTACACTTCAACGGAG..................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................TTTATAAATTAAGAACGCATAAATAC...................................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................ATTTCCTGGCCTTGTGTTACC............................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
.............................................................................................................................TCGGAAATGTGTAAACTAGATTCAAGTAT.................................................................................................................................................... 29 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................CTATAAATTACACTTCAACGG....................... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................ATAAGACTATAAATTACACTTAAAA......................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TAAATTACACTTCAACGGAG..................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................AACGCATAAATACATATTTCCTGGCC......................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TATCTATTTTCTTTTTTTCCAAATCGG.......................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGTCAATCGTATTTATCTA............................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TAAATTACACTTAAACGGAG..................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TATAAGGTCCCATTGTCAATCGTATT..................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTTCCTGGCCTTGTGTTACCTCAACCTG....................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................AAACTAGATTCAATTATTGC................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................GTGTTACCTCAACCTTAACGA.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................TTTCCTGGCCTTGTGTTACC............................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................TGTTATCTCAACCTTAACGAATCGGAAA.......................................................................................................................................................................... 28 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ATATTTCCTGGCCTTGTGTTA................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TACATATAAGGTCCCATTGTCAATCGTA....................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TAAATTACACTTCAACGGAGA.................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................CTATAAATTACACTTTAACGG....................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TCCTGGCCTTGTGTTACCTCA............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................AAATTAAGAACGCATAAATA....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................CATAAATACATATTTCCTGG........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCCCATTGTCAATCGTATT..................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................TAAAATAATAATATTACTATA................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TACACTTCAACGGAGATCACACA............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................ACATATTTCCTGGCCTTGTGT................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGTCAATCGTATTTATCTATT............................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................AGGAACGCATAAATACATATT................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................CTTAACGAAATGGAAATGTG...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................AAATGGATATGTGTAAACTAG.............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ACCTTAACGAATCGGAAATGTGTAAAC................................................................................................................................................................. 27 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................CGGAAATGTGTAAACTAGATTCAAGTAT.................................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AGAACGCATAAATACATATTTCCTGGCC......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................TGGAAATGTGTAAACTAGATT........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................ATACATATTTCCTGGCCTTG...................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................TATAAATTAAGAACGCATAAATACA..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................ACGAATCGGAAATGTGTAAAC................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATGTGTAAACTAGATTCAATT...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................ATGTGTAAACTAGATTCAAGT...................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAACGAAATGGAAATGTGT..................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................TGTGTTACCTCAACCTTAACGAAATGGA............................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................TATACATATAAGGTCCCATTG................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................TCTCAACCTTAACGAATCGGAAA.......................................................................................................................................................................... 23 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TCAAAGATAAGACTATAAATTACACT.............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GTGTAAACTAGATTCAAGTAT.................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAACGAATCGGAAATGTGTAA................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TACCTCAACCTTAACGAAATG.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TATAAATTACACTTCAACGGAA..................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................TTAACGAATCGGAAATGTGTA.................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................ATCTCAACCTTAACGAATCGG............................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATAATAATATAACTATATAC................................................................................................................ 20 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................TCGGAATCAAGGATGGGACTAT........................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................TGAAAAGGAAATGTGTAATCTA............................................................................................................................................................... 22 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCAATCGTCTTAGTCTATT............................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................AAACTAGATTCAAGT...................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############################################
AGCCAATTATACCAATAAAACTATGTATAATACATATTTCGTGGCGGTTCCATTAAAGTTGTAAATATTTAATTCTTGCGTATTTATGTATAAAGGACCGGAACACAATGGAGTTGGAATTGCTTTACCTTTACACATTTGATCTAAGTTAATAACGTATTTTATAATTTTATTATTATAATGATATATGTATATTCCAGGGTAACAGTTAGCATAAATAGATAAAAGAAAAAAAGGTTTAGCCTTAGTTTCTATTCTGATATTTAATGTGAAGTTGCCTCTAGTGTGTTTAGCTCGGAATA
****************************************************************************************************************************************************************************........(((((........((((((.............))))))........))))).........************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 M053
female body
 O002
Head
 SRR902008
ovaries
 O001
Testis
....................................................................................................................................................................................................CCAGGGTAACAGTTAGCATAA..................................................................................... 21 0 1 17.00 17 1 3 1 8 2 1 0 1 0 0 0 0 0
................................................................................................................GTTGGAATTGCTTTACCTTTA......................................................................................................................................................................... 21 0 1 13.00 13 0 0 0 7 2 0 0 0 3 1 0 0 0
......................................................................................................................................................................................................AGGGTAACAGTTAGCATAAAT................................................................................... 21 0 1 11.00 11 3 1 7 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................AGCCTTAGTTTCTATTCTGAT......................................... 21 0 1 7.00 7 0 5 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGGTAACAGTTAGCATAAA.................................................................................... 21 0 1 5.00 5 1 2 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................ATGGAGTTGGAATTGCTTTAC.............................................................................................................................................................................. 21 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGAAGTTGCCTCTAGTGTGT............. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCCAGGGTAACAGTTAGCATA...................................................................................... 21 0 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0 0 0
.................................................................................................................TTGGAATTGCTTAGCCTTTAC........................................................................................................................................................................ 21 2 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TTTGATCTAAGTTAATAACGT................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGGTAACAGTTAGCATAAATAGAT............................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTCCAGGGTAACAGTTAGCATAAATAG................................................................................. 28 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................................GGTTTAGCCTTAGTTTCTATT.............................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGTTGGAATTGCTTTACCTTT.......................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TTAATGTGAAGTTGCCTCTAGTGTGTTT........... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTAATTCTTGCGTATTTATGT..................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TTAGCCTTAGTTTCTATTCTG........................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................AGCCTTAGTTTCTATTCTGATA........................................ 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CCAGGGTAACAGTTAGCAT....................................................................................... 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGGTAACAGTTAGCATAAA.................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................ATTCTGATATTTAATGTGAAGTT.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGGTAACAGTTAGCATAAATAGATAAA............................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGAAGTCGCCTCTAGTGTGT............. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................ATTGCTTTACCTTTACACATT................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AAAGGTTTAGCCTTAGTTTCT................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGAGTTGGAATTGCTTTAC.............................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GAGTTGGAATTGCTTTACC............................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AAAGGTTTAGCCTTAGTTTCTAT............................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTGATCTAAGTTAATAACGTA............................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................ATTTCGTGGCGGTTCCATTAA...................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TTGATCTAAGTTCATAACGTAT.............................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTGCCTCTAGTGTGTTTAGCT....... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................GTTGTAAATATTTAATTCTT................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TTGGAATTGCTTAGCCTTTACACATTT.................................................................................................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGGTAACAGTTAGCATAAAT................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........TACCAATAAAACTATGTATAAT............................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGGTAACAGTTAGCATAAATA.................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAAAAGGTTTAGCCTTAGTTTCTATT.............................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................GGAGTTGGAATTGCTTTACCTTT.......................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATTGCTTAGCCTTTACACATT................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................GGTATATGTATATTCCAGGGTA.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CCTCTAGTGTGTTTAGCTCGGG... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGGTAACAGTTAGCATAAAT................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GAAGTTGCCTCTAGTGTGTT............ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................TAGGTGGCGGTTCCATTAAAGTTGT................................................................................................................................................................................................................................................ 25 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................AATGGAGTTGGAATTGCTTT................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GAGTTGGAATTGCTTTACCT............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGAAGTTGCCTCTAGTGTGTTTAGCT....... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTGATCTAAGTTCATAACGTA............................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................CAATAGAGTTGGAATTGCTTT................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..CCAATTATACCAATAAAACTA....................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................AATTGGAATTGCTTTACCTTTACA....................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAAAATTCCAGGGTAACAGTTAGCAT....................................................................................... 26 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................TTATGTATAAAGGACCGGAACACAAT................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................CCAGGGTAACAGTTAGCATA...................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GAGTTGGAATTGCTTAGCCTTT.......................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGTTGGGGTTGCTTTACCTTT.......................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GGACCGGAACACAATGGAGTT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................AAGTTGCCTCTAGTGTGTTTA.......... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TTAGTTTCTATTCTGATATTT..................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GGAATTGCTTAGCCTTTACAC...................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TTCTGATATTTAATGTGAAG............................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTGCCTCTAGTGTGTTTAGCTCG..... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................AATGGAGTTGGAATTGTTTT................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AAAAGTTGCCTCTAGTGTGTTTA.......... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TAATGTGAAGTTGCCTCTAGT................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGGTAACAGTTAGCATAA..................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ACACAATAGAGTTGGAATTGCTTAG............................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGGGTAACAGTTAGCATAAAT................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGGAATTGCTTAGCCTTTACACATTT.................................................................................................................................................................. 26 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TATTCCAGGGTAACAGTTAGC......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................TGATATTTAATGTGAAGTTGCCTC..................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................AGCCTTAGTTTCTATTCTG........................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................AAGTTGCCTCTAGTGTGTT............ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................TTGGAATTGCTTTACCTTTAC........................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ACAATAGAGTTGGAATTGCTT................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GAAGTTGCCTCTAGTGTGT............. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................AGGGTAACAGTTAGCATAAATA.................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGTTCCATTAAAGTTGTAAATATTT........................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGAAGTTGCCTCTAGTGTGTT............ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AATTGCTTTACCTTTACACAT.................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................GAGTTGGAATTGCTTTACCTT........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TTTAGCCTTAGTGTCTTTTCT............................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................ATAAAGTCTTTTATAATTTTAT................................................................................................................................. 22 2 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................ATAGTTTCTATTCTGA.......................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAAAAATGTTTAGCCT......................................................... 16 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TTTAGCCCTAGTTTC.................................................. 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................AAACTCTGTATAATA.............................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAAAAAAAAATGTTTAGGCTT........................................................ 22 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:229186-229487 - dsi_30243 TCGGTTAATATGGTTATTTTGA-TACATATTATGTATAAAGCACCGCCAAGGTAATTTCAACATTTATAAATTA-AGAACGCATAAATACATATT-TCCTGGCCTTGTGTTACCT---------------CAACCTTAACGAAATGGAAATGTGTAAACTAGATTCAATTATTGCATAAAATATTAAAATAATAATATTACTATA----TACATATAAGGTCCCATTGTCAATCGTATTTATCTATTTTCTTTTTT-TCCAAATCGGAATCAA-----------------------------------------------------------------------------AGATAAGACTATAAATTACACTTCAACGGA-GATCACACAAATCGAGCCTTAT
droSec2 scaffold_6:367350-367652 - TCTGTTAATATGGTTATTTTGA-TACATATTACGTATAAAGCACCGCCAAGGTAATTTCAACATCTATAAATTA-AGAACGCATAAATACAAATT-TGCTGGCCTTGTGTTATCT---------------CAACCTTAACGAAATGGAAATGTGTAAACTAGATTCAAGTATTGCATAAAATATTAAAATAATAATATAACTATA----TACATATAAGGTCCCATTGTCAATCGTATTTATCTATTTTCTTTTTTTTCCAAATCGGAATCAA-----------------------------------------------------------------------------AGATAAGACTATAAATTACACTTCAACGGA-GATCACACAAATCGAGCCTTAT
dm3 chr3R:261754-262132 - TCGGATAATATGGTTATTTGGA-TACATATGATGTATAAAGGACCGCCAAGTTTATTTCAACATTTATAATTTAAATTATGCATCAATACATATT-TCCTGGCCTTCTGTTATCT---------------CAACTTTTACGAAATGGAAATTTGTAAACTAGATTTATGTATTTCATAAAATATTAAAATAACATTATAACTATA----TACATATATAGACTCATTGTCAATCGTATTTATCTATTTTTTTTTTTGTCCAAATCTGAATCAAAATCTTCGAAAT-GTATGCCATACAAGAAAACTCAGCGACACACAGCCAACAAAAAAT-TTGGCCCGAATCGAAGTTATATCTTACTATAAATTACACTTCAATGGA-GATCACATAAATCGAGCTTTAT
droEre2 scaffold_4770:607993-608317 - TCGGTTAATACGGTTTT-TTGA-TAC---------------------------------AACATTTATAAATTA-GGAAGGCCTCGATACATATT-TCCTGACCTTGTGGTCTTTCACCATTATGCCATACAACGTAAAAGAAATGGAAATGTGTAAAATAGGT---------------AGTAATAAAATTTTATTAAAACTATT----TACATATAAGGTACCACTGTCAGT--------------TCCTTTTTTCTCCAAATCTATATTAAGATCTTTGCAATTTTATACCGTATAA-AAAACTCAGCGAAAAACAGCCAACAAATAATGTTGCCCTGAATTGAATTTCCATC------CAAGTTAGTGTTCAACGGA-GATCACACAAATCGAGCCTTAT
droYak3 3R:638482-638826 - TCGGTTAATGAGGTTTTTTTATATATATATTGTATTTAAAACACCGCCAA----------------ATAAATTA-GGAACGCCTCAATAAATATTTTGTTGGCCTTATGTTAATTAACTATTATGCCATACAACGTTTACGAAATGGAAATCTATAAAATAGATTTATGTATTGCATAAACTATTC--------TTAGAGCTATATATGTACATCTTAGGTACTAGTGTCAATCATAATTATCTATATCCTTTTTTATTCAAATCTGAATCAAAATCT---------TATGCCATAAAAGAAAACTCAGCGACACACAGCCAACAAATAAAGTTGCCCTAAATTGA-----------------------ACTTTTACGGA-GATCAGACAAATCGAGCCTTAT
droEug1 scf7180000409759:204028-204047 - TCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCGAGCCTTGT
droBia1 scf7180000302098:176518-176603 + ATTGATCACCT-------------------------------------------------------------------------------------TCCTT-----------------------GCCATAAATCA---------------------------------------------------------------------------------------------------------------------------------------------------GAAT-----------AG-A-----------------------------TATTTCTTTAAATTTAATTATTATC------CAAA--------------G-TATTAATTAAATCGAGAATTGT
droTak1 scf7180000415291:36932-36952 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGTAAAACGAGCATTGT
droEle1 scf7180000491104:2018587-2018619 - ACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAAT-AATCATATAAAACGAGCCTTAT
droRho1 scf7180000763184:27292-27337 - TCAGTTCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------AA-A-----------------------------TAACT--TTTAATAA---------------------------------ATACATCATACAAA---------AC
droFic1 scf7180000454096:1396427-1396478 - CCATTTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC-----------AA-A-----------------------------TAACTCATTTAATAC---------------------------------AT-GATCATACAAAACGAGCC----
droKik1 scf7180000302475:428172-428185 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCGCGCCTTGT
droAna3 scaffold_13340:11258184-11258197 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGAGCCTTGT
droBip1 scf7180000396691:168006-168019 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTAGCCTTGT
dp5 2:24512959-24512974 + AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGGCTTTGT
droPer2 scaffold_3:7294402-7294417 + AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGGCTTTGT
droWil2 scf2_1100000004943:2959260-2959274 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGCGTGATTTAT
droVir3 scaffold_12855:2782315-2782327 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGAGCCTTAT
droMoj3 scaffold_6540:31270983-31270995 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGCGCTTTAT
droGri2 scaffold_15291:4860-4874 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACGAGCTTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGGTTAATATGGTTATTTTGA-TACATATTATGTATAAAGCACCGCCAAGGTAATTTCAACATTTATAAATTA-AGAACGCATAAATACATATT-TCCTGGCCTTGTGTTACCT---------------CAACCTTAACGAAATGGAAATGTGTAAACTAGATTCAATTATTGCATAAAATATTAAAATAATAATATTACTATA----TACATATAAGGTCCCATTGTCAATCGTATTTATCTATTTTCTTTTTT-TCCAAATCGGAATCAA-----------------------------------------------------------------------------AGATAAGACTATAAATTACACTTCAACGGA-GATCACACAAATCGAGCCTTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................CCT---------------CAACCTTAACGAAATGGA...............................................................................................................................................................................................................................................................2114.00400000020200000000
......................................................................................................................................................................................................................................................................ATCGGAATCAA-----------------------------------------------------------------------------AGATAAGACT...........................................2113.00320000000100000000
.......................................................................................................................................................................................................................................................................TCGGAATCAA-----------------------------------------------------------------------------AGATAAGACTATAAAT.....................................2613.00300000011000001000
.................................................................................................................................................................................................................................................................................................................................................................TAAGACTATAAATTACACTTCAACGGA-......................2713.00300000021000000000
.................................................................................................................................................................................................................................................................................................................................................................TAAGACTATAAATTACACTTCAACGGA-G.....................2812.00200000020000000000
...............................................................TTTATAAATTA-AGAACGCATAAATAC.........................................................................................................................................................................................................................................................................................................................2612.00200000000000002000
............................................................................................ATT-TCCTGGCCTTGTGTTACC.................................................................................................................................................................................................................................................................................................2112.00202000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CTATAAATTACACTTCAACGG........................2112.00201000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................TAAATTACACTTCAACGGA-G.....................2011.00100000010000000000
.............................................................................AACGCATAAATACATATT-TCCTGGCC...........................................................................................................................................................................................................................................................................................................2611.00100000000000001000
...............................................................................................................................................................................................................................................TATCTATTTTCTTTTTT-TCCAAATCGG........................................................................................................................................2711.00100000000010000000
.................................................................................................................................................................................................................................TTGTCAATCGTATTTATCTA..............................................................................................................................................................2011.00100000000010000000
.....................................................................................................................................................................................................................TATAAGGTCCCATTGTCAATCGTATT....................................................................................................................................................................2611.00100000001000000000
.............................................................................................TT-TCCTGGCCTTGTGTTACCT---------------CAACCTG..........................................................................................................................................................................................................................................................................2811.00100000000001000000
...........................................................................................................................................................AAACTAGATTCAATTATTGC....................................................................................................................................................................................................................................2011.00100001000000000000
..........................................................................................................GTGTTACCT---------------CAACCTTAACGA.....................................................................................................................................................................................................................................................................2111.00100001000000000000
.............................................................................................TT-TCCTGGCCTTGTGTTACC.................................................................................................................................................................................................................................................................................................2011.00100001000000000000
..........................................................................................ATATT-TCCTGGCCTTGTGTTA...................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................TACATATAAGGTCCCATTGTCAATCGTA......................................................................................................................................................................2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................TAAATTACACTTCAACGGA-GA....................2111.00100010000000000000
................................................................................................TCCTGGCCTTGTGTTACCT---------------CA...............................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................AAATTA-AGAACGCATAAATA..........................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.................................................................................CATAAATACATATT-TCCTGG.............................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..........................................................................................................................................................................................................................GGTCCCATTGTCAATCGTATT....................................................................................................................................................................2111.00100000000010000000
........................................................................................................................................................................................TAAAATAATAATATTACTATA----..................................................................................................................................................................................................2111.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TACACTTCAACGGA-GATCACACA.............2311.00100000001000000000
........................................................................................ACATATT-TCCTGGCCTTGTGT.....................................................................................................................................................................................................................................................................................................2111.00100000001000000000
.................................................................................................................................................................................................................................TTGTCAATCGTATTTATCTATT............................................................................................................................................................2211.00100010000000000000
......................................................................................................................................CTTAACGAAATGGAAATGTG.........................................................................................................................................................................................................................................................2011.00100001000000000000
...........................................................................AGAACGCATAAATACATATT-TCCTGGCC...........................................................................................................................................................................................................................................................................................................2811.00100000000001000000
................................................................................................................................................TGGAAATGTGTAAACTAGATT..............................................................................................................................................................................................................................................2111.00100000000100000000
......................................................................................ATACATATT-TCCTGGCCTTG........................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.................................................................TATAAATTA-AGAACGCATAAATACA........................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.....................................................................................................................................................ATGTGTAAACTAGATTCAATT.........................................................................................................................................................................................................................................2111.00100000000010000000
........................................................................................................................................TAACGAAATGGAAATGTGT........................................................................................................................................................................................................................................................1911.00100000000001000000
.........................................................................................................TGTGTTACCT---------------CAACCTTAACGAAATGGA...............................................................................................................................................................................................................................................................2811.00100000000100000000
...........................................................................................................................................................................................................TA----TACATATAAGGTCCCATTG...............................................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................................................................................................................................................TCAA-----------------------------------------------------------------------------AGATAAGACTATAAATTACACT...............................2611.00100000001000000000
..............................................................................................................TACCT---------------CAACCTTAACGAAATG.................................................................................................................................................................................................................................................................2111.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TATAAATTACACTTCAACGGA-A.....................2211.00100000010000000000
droSec2
TCTGTTAATATGGTTATTTTGA-TACATATTACGTATAAAGCACCGCCAAGGTAATTTCAACATCTATAAATTA-AGAACGCATAAATACAAATT-TGCTGGCCTTGTGTTATCT---------------CAACCTTAACGAAATGGAAATGTGTAAACTAGATTCAAGTATTGCATAAAATATTAAAATAATAATATAACTATA----TACATATAAGGTCCCATTGTCAATCGTATTTATCTATTTTCTTTTTTTTCCAAATCGGAATCAA-----------------------------------------------------------------------------AGATAAGACTATAAATTACACTTCAACGGA-GATCACACAAATCGAGCCTTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................AACTAGATTCAAGTATTGCAT..................................................................................................................................................................................................................................2113.0030201
.....................................................................................................................................................ATGTGTAAACTAGATTCAAGT.........................................................................................................................................................................................................................................2112.0020101
..................................................................................ATAAATACAAATT-TGCTGGCCTTGTGT.....................................................................................................................................................................................................................................................................................................2711.0010010
......................................................................................................................................................TGTGTAAACTAGATTCAAGTAT.......................................................................................................................................................................................................................................2211.0010010
......................................................................................................................................................................................................................................................................ATCGGAATCAA-----------------------------------------------------------------------------AGATAAGAC............................................2011.0011000
.........................................................................................................................................................................................................................................................................................................................................................................TAAATTACACTTCAACGGA-GA....................2111.0011000
.............................................................................................TT-TGCTGGCCTTGTGTTATCT---------------.................................................................................................................................................................................................................................................................................2111.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................GA-GATCACACAAATCGAGCCT...2111.0010100
.................................................................................................................................................................................................................................TTGTCAATCGTATTTATCTAT.............................................................................................................................................................2111.0011000
........................................................................................................................................TAACGAAATGGAAATGTGTA.......................................................................................................................................................................................................................................................2011.0010010
..................................................................................................................T---------------CAACCTTAACGAAATGGAAAT............................................................................................................................................................................................................................................................2211.0011000
...............................................................................................................................................................................................................................CATTGTCAATCGTATTTATCT...............................................................................................................................................................2111.0010100
..........................................................................................................GTGTTATCT---------------CAACCTTAACG......................................................................................................................................................................................................................................................................2011.0011000
......................................................................................................................................................TGTGTAAACTAGATTCAAGT.........................................................................................................................................................................................................................................2011.0010010
dm3
TCGGATAATATGGTTATTTGGA-TACATATGATGTATAAAGGACCGCCAAGTTTATTTCAACATTTATAATTTAAATTATGCATCAATACATATT-TCCTGGCCTTCTGTTATCT---------------CAACTTTTACGAAATGGAAATTTGTAAACTAGATTTATGTATTTCATAAAATATTAAAATAACATTATAACTATA----TACATATATAGACTCATTGTCAATCGTATTTATCTATTTTTTTTTTTGTCCAAATCTGAATCAAAATCTTCGAAAT-GTATGCCATACAAGAAAACTCAGCGACACACAGCCAACAAAAAAT-TTGGCCCGAATCGAAGTTATATCTTACTATAAATTACACTTCAATGGA-GATCACATAAATCGAGCTTTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................AACTTTTACGAAATGGAAATT...........................................................................................................................................................................................................................................................21161.006100000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000003900000000000000000000000000000100000000000001010000000000000000000000000000000000000000000600020100100000000000200000010000000000000000000000101000
...............................................................................................................................................ATGGAAATTTGTAAACTAGAT...............................................................................................................................................................................................................................................21149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000012003150000000000000002601000010000000000000000000100100000
.....................................................................................................................................................ATTTGTAAACTAGATTTATGT.........................................................................................................................................................................................................................................21143.00430000000000000000000000000040000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000110020000000000200000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000100260200100000000102301000030000100000021000000000102000
...............................ATGTATAAAGGACCGCCAAGT...............................................................................................................................................................................................................................................................................................................................................................21138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000020000000000000000001000000100110100201001001000000000000000000000000000000000001100000200060000000000000000111000040000200000000100000000300010
......................................................................................................................................TTTTACGAAATGGAAATTTGT........................................................................................................................................................................................................................................................21136.00360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000010010000000000000000000000000000001100001010000000000000000000000000000000000000000003612280000000010000103000000000000000000000000000000100000
..................................................................................................CTGGCCTTCTGTTATCT---------------CAAC.............................................................................................................................................................................................................................................................................21135.00350000000000000000000000000000000000000000000000000000000000000000000000000000022200100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000213350000000000000000000000000000000000001000000000000000010000000000000000000070000001000000000000000100000
..............................................................................................T-TCCTGGCCTTCTGTTATCT---------------C................................................................................................................................................................................................................................................................................21134.00340000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000052621442120000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................ATATGATGTATAAAGGACCGC....................................................................................................................................................................................................................................................................................................................................................................21134.00340000000000000000000000000010000000000000100000000000100000000000000000000000000000000020000000000000000000050000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001011100000000000000000000000000000000001011000000000000000000000100000100110000000000002000000000000010107010
............................................................................................ATT-TCCTGGCCTTCTGTTATC.................................................................................................................................................................................................................................................................................................21133.00330000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000021313263020000000000000000000000000000000000000000000000000000000000000000100000050000000000000000000000000000
...........................TATGATGTATAAAGGACCGCC...................................................................................................................................................................................................................................................................................................................................................................21131.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001002000000010000000000000000000000000000000001800011100000000000001200000001000100000000000000000403010
................................................................................................................................................TGGAAATTTGTAAACTAGATT..............................................................................................................................................................................................................................................21127.00270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000501013044000000000000000000010000000000000000000000100020000000000000001000000020000000000000000000000001010
........................................................................................ACATATT-TCCTGGCCTTCTGT.....................................................................................................................................................................................................................................................................................................21126.00260000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000031212011000000000000000000000000000000000000000000000000130000000000000000100000031000000000000000000000001200
.............................................................................................TT-TCCTGGCCTTCTGTTATCT---------------.................................................................................................................................................................................................................................................................................21124.00240000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033101350000000000000000000000000000000000000000000000100030000000000000000000000010000000000000000000000000000
.................................................................................CATCAATACATATT-TCCTGGC............................................................................................................................................................................................................................................................................................................21121.00210000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000300000022201031011000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................GTATAAAGGACCGCCAAGTT..............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TCATAAAATATTAAAATAACA.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CAAGTTTATTTCAACATTTA................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................T-TCCTGGCCTTCTGTTATCT---------------CAA..............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATATT-TCCTGGCCTTCTGTTAA..................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCT---------------CAACTTTTACGAAATGGAA..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGTTATCT---------------CAACTTTTACGA.....................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TATAGACTCATTGTCAATCGTA......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................CTTCTGTTATCT---------------CAACTTTT.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CATATT-TCCTGGCCTTCTA......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TTACGAAATGGAAATTTGT........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAAAAT-TTGGCCCGAATCGAAGT......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TCTATTTTTTTTTTTGTCCAAA............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AACATTATAACTATA----TACATA............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AATTTGTAAACTAGATTTATG..........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAGGACCGCCAAGTTTATTTCAA......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................TCAACATTTATAATTTAAATTATGCATC..............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTTTACGAAATGGAAATTTGC........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................TTATTTCAACATTTATAATTT..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TATCT---------------CAACTTTTACGAAATGGAAA.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TTTATAATTTAAATTATGCATCAATACAC.......................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TGATGTATAAAGGACCGCCA..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
droEre2
TCGGTTAATACGGTTTT-TTGA-TAC---------------------------------AACATTTATAAATTA-GGAAGGCCTCGATACATATT-TCCTGACCTTGTGGTCTTTCACCATTATGCCATACAACGTAAAAGAAATGGAAATGTGTAAAATAGGT---------------AGTAATAAAATTTTATTAAAACTATT----TACATATAAGGTACCACTGTCAGT--------------TCCTTTTTTCTCCAAATCTATATTAAGATCTTTGCAATTTTATACCGTATAA-AAAACTCAGCGAAAAACAGCCAACAAATAATGTTGCCCTGAATTGAATTTCCATC------CAAGTTAGTGTTCAACGGA-GATCACACAAATCGAGCCTTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................GAAATGGAAATGTGTAAAAT...................................................................................................................................................................................................................................................2011.0010000100
.........................................................................A-GGAAGGCCTCGATACATAT.....................................................................................................................................................................................................................................................................................................................2011.0010100000
droYak3
TCGGTTAATGAGGTTTTTTTATATATATATTGTATTTAAAACACCGCCAA----------------ATAAATTA-GGAACGCCTCAATAAATATTTTGTTGGCCTTATGTTAATTAACTATTATGCCATACAACGTTTACGAAATGGAAATCTATAAAATAGATTTATGTATTGCATAAACTATTC--------TTAGAGCTATATATGTACATCTTAGGTACTAGTGTCAATCATAATTATCTATATCCTTTTTTATTCAAATCTGAATCAAAATCT---------TATGCCATAAAAGAAAACTCAGCGACACACAGCCAACAAATAAAGTTGCCCTAAATTGA-----------------------ACTTTTACGGA-GATCAGACAAATCGAGCCTTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................ATAAATTA-GGAACGCCTCAAT...........................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................TATTGCATAAACTATTC--------TTAGA............................................................................................................................................................................................................2211.00101000000000
droEug1
TCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCGAGCCTTGTSizeHit CountTotal NormTotal
No Reads
droBia1
ATTGATCACCT-------------------------------------------------------------------------------------TCCTT-----------------------GCCATAAATCA---------------------------------------------------------------------------------------------------------------------------------------------------GAAT-----------AG-A-----------------------------TATTTCTTTAAATTTAATTATTATC------CAAA--------------G-TATTAATTAAATCGAGAATTGTSizeHit CountTotal NormTotal
No Reads
droTak1
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATGTAAAACGAGCATTGTSizeHit CountTotal NormTotal
No Reads
droEle1
ACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAAT-AATCATATAAAACGAGCCTTATSizeHit CountTotal NormTotal
No Reads
droRho1
TCAGTTCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------AA-A-----------------------------TAACT--TTTAATAA---------------------------------ATACATCATACAAA---------ACSizeHit CountTotal NormTotal
No Reads
droFic1
CCATTTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC-----------AA-A-----------------------------TAACTCATTTAATAC---------------------------------AT-GATCATACAAAACGAGCC----SizeHit CountTotal NormTotal
No Reads
droKik1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCGCGCCTTGTSizeHit CountTotal NormTotal
No Reads
droAna3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGAGCCTTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTAGCCTTGTSizeHit CountTotal NormTotal
No Reads
dp5
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGGCTTTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACGGGCTTTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGCGTGATTTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGAGCCTTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACGCGCTTTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACGAGCTTTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:37 AM