ID:

dsi_30240

 Coordinate:

3r:11575823-11576109 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-85.4 -85.4 -85.4

Flybase annnotation

exon [3r_11576110_11576282_-]; CDS [3r_11576110_11576282_-]; exon [3r_11575367_11575822_-]; CDS [3r_11575367_11575822_-]; intron [3r_11575823_11576109_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTACATGCATACATATCTGGCTGGGCAGATCAGGGAGAGATGCTTATGGGCGCCGCTAAGCATTAACTTGTCGCCCAGGGCAGCAGCCCGTCGATTGGGAAACTGCAAACAGCTGGCCACCTGCCAAACGGAATTTATAGCTTTTAGCACACAGGCTGTGGGCATTAATTTCGTTATTAATAAATTGATGCGGAACAGGGCAGAGTGTACACAGTACACAGATAGCAAAGCTAAAATGGCTGAGAATTACTATATTTAAGCGCTTGACGATGCGTTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
**************************************************(((.((.....)).)))....((((((((((.((.((((....(((((((((((...))).))))))))..)))))))))))).((((...((((.....))))...))))...((((((((.....))))(((((((((.((.((((.((((......)))).)))))).))))))))).............(((........)))..((((((...))))))...((((...)))).....))))...............((((((........)))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATACCCGGC.......................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCCGGC.......................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCC............................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................GCTACATGCATACATATC........................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................GGTCTGAAGATGAAGAGCAAGATCCT........................................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........CTGCGTGGTCTGAAGATGAAGAGCA............................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GTCGAGATACCCGGCATTCTAGG.................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CCACATCGTCGAGACACCAGG........................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TATGGCTGAGAGTTACTGTAT............................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.......................AAGGTGAAGAGCACGAACCT........................................................................................................................................................................................................................................................................................................................................................ 20 3 6 0.33 2 0 0 0 0 0 0 0 2 0 0
......................GAAGGTGAAGAGCACGAACCT........................................................................................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAGTTTCGTTATTAAAAAAT................................................................................................................................................... 20 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.........GCCTCCGTGGTCCGAAGTT....................................................................................................................................................................................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................AGGTGCGAAAGCAAG.... 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................AGGTGCGAAAGCAAGTC.. 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
................................AGCAAGAGACTCGAGTAGG................................................................................................................................................................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................TGATGCGGACCAGGGGA.................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0
................................AGCAAGATACTCGAG.................................................................................................................................................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 1 0
.........................................CGGGAGAAGGTAGGCT.......................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................CATTAATAACGTTATTAA........................................................................................................................................................ 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATATTAAAGCACTGGACGA.............................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCTCCTCGCGGACGCACCAGACTTCTACTTCTCGTTCTAGGAGCTCTTCCATCCGATGTACGTATGTATAGACCGACCCGTCTAGTCCCTCTCTACGAATACCCGCGGCGATTCGTAATTGAACAGCGGGTCCCGTCGTCGGGCAGCTAACCCTTTGACGTTTGTCGACCGGTGGACGGTTTGCCTTAAATATCGAAAATCGTGTGTCCGACACCCGTAATTAAAGCAATAATTATTTAACTACGCCTTGTCCCGTCTCACATGTGTCATGTGTCTATCGTTTCGATTTTACCGACTCTTAATGATATAAATTCGCGAACTGCTACGCAAAAAGTCCAGTTGTAGCAGCTCTATGGGCCGTAAGATCTCCACGCGTTCGTTCACAG
**************************************************(((.((.....)).)))....((((((((((.((.((((....(((((((((((...))).))))))))..)))))))))))).((((...((((.....))))...))))...((((((((.....))))(((((((((.((.((((.((((......)))).)))))).))))))))).............(((........)))..((((((...))))))...((((...)))).....))))...............((((((........)))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................................................................GTCTCACATGTGTCATGT.................................................................................................................. 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................GGGCAGCTATCCCTTAGA.................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................AGTTGGAGCTGCTCTATG............................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................GTTGGTCGATTGGTGGACGGT.............................................................................................................................................................................................................. 21 3 19 0.16 3 0 0 0 0 0 0 0 2 0 1
.................................................................................................................................................................TTGGTCGATTGGTGGACGGT.............................................................................................................................................................................................................. 20 3 20 0.15 3 0 0 0 0 3 0 0 0 0 0
.................................................................................TCTCGTCCCTCTCTATGAAC.............................................................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................GAACAGTAGGTCACGTCGTC...................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0
..........GGACGTACCAGTCTTATAC...................................................................................................................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................CTCAATTGAACAGCGAGTC.............................................................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................TTTTACCGACCCATAATAATA............................................................................... 21 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11575773-11576159 - dsi_30240 TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTAC----A------------TGCA--------------------TACATATCTGGCTGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTAT------GGG--C-GCCGCTAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GTGTACACAG--TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AATGGCTGAGAATTACTATATTTAAGCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droSec2 scaffold_0:12404417-12404803 - TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTAC----A------------TGCA--------------------TACATATCTGGCTGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTAT------GGG--C-GCCGCTAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GTGTACACAG--TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AATGGCTGAGAATTACTATATTTAAGCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
dm3 chr3R:9602637-9603024 + TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAAAAGGTAGGCCAA----A------------TGCA--------------------AACATATCTCGCTGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTAT------GGG--C-GCCGCTAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AAGCTG----------TGGGCATTAATTTTGTT-ATTAATAAATTAAA-TGCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GAGTACACAG--TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AATGGCTGAGAATTACTATATTTAAGCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droEre2 scaffold_4770:12029814-12030206 - TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCCA------------------TGCAT--GTATTTACA--------TACATATCTGGGCGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TCAT------GGG--C-GCCGCCAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AAAACAG-TGCAGTTGGGAACC-TG------------CAA------------------------AACA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTAAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GAGTACA-------AATAGATAG------CAAAGCTAA---------------------------------------------------------------AAAGGCTGAGAATTACTATATTTAAGAGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droYak3 3R:13911305-13911696 + TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCCA------------------TACATAAAT------A--------TACATATCTGTGAGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTTT------GGG--C-GCCGCCAGGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGAAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GAGTACACAGA-TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AAAGGCTGAGAATTACTATATTTAAGCACTTGGCGA-------------------------------------------------------------------TGCA-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droEug1 scf7180000409802:365736-366167 - TGGAGGAGCGCCTGCGTGGTCTGAAAATGAAGAGCAAGATCCTCGAAAAGGTAAGACA-----A------------TA-----GT------ATATAGCC-TA-CTATCTGTCAGGGCAGATCAGGGAGAGAGGT--------------------------------------------------------------GTACC-A-T-AGA--ATACC-TCAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCTC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACATGCCAAA--------CGGAATTTATAGCTTTTAGC----GCAC-AGGCTG----------TGTGCATTAATTTCGTT-ATTAATAAATTGATGTGCGGGACAGGACAGA--G--------ATAGT----GGCCAA-----------------------------------------------------------------------------GAAAACAGACCAAACAGACAG------TAAAGCAGATATATATCTAAGACAAAGGC------------------------A------------------AACTGCAGAGAATTACTATATTTAAGCACTTGGCTA-------------------------------------------------------------------TGCGTATTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droBia1 scf7180000302402:2346275-2346679 + TGGAGGAACGTCTGCGAGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAAGATA------------------CGCAT--T--------------CGTA-CTATCTGGCAGGGCAGATCAGGGCCAGCGGC--------------------------------------------------------------GTAT------AGG--T-GCCGCCGTGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TTTGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGACAGGGCGCAGAG----------------CGGGCAGCTC-------------------------------------------------------------------------AATAC-------ATATAGACA----TAGTAAGGCAG--------------CGCGGGC------------------------A-G----------------AACACCAGAGAATTACTATATTTAAGCACTGGGCTG-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTTGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droTak1 scf7180000415380:443229-443618 + TGGAGGAGCGCCTGCGGGGTCTGAAGATGAAGAGCAAAATCCTCGAGAAGGTAAGATA--------------------CATAGAT------ATGTGCCCGTA-ATATCTGGCAGGGCAGATCAGGGACAG-----------------------------------------------------------------------------------------AGGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAG------------------------AGCA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TTTGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGACAGGG------GCGGACTGGGTGGT----GGCCGACA-----------------------------------------------------------------------CAAAGCACAAAA--AATACAGACAG------TAAAGC------------------------------------------------------------------------TGAGAATTACTATATTTAAGCACTCGGCTA-------------------------------------------------------------------TGCG-CTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droEle1 scf7180000491047:1581293-1581666 - TGGAGGAGCGCCTGCGGGGCCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTAT----A------------GAC----------------------CCATATCTGGCAGGGCAGATCAGGGATAGA-GC-----------TAGTACTAGC-----------------------------------------TCGTCCGTC-AGG--T-GCAGCCAAGCATTAACTT-GTCT-CC---C-----------------AGGGCAGC----AGCTC---GTCGATTGGGAAAC-TG------------CAA------------------------A-TA---GCTGGCCATCTGCCAAT--------CGGAATTTATAGCTTTTAGC----GCAC-AGACT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGCT--G------------------------------------------------------------------------------------------------------------------------------------CAGTAAGGCAG--------------CGAAGGC------------------------A-G----------------A----GAGAGAATTACTAAATTTAAGCACTTGGCGA-------------------------------------------------------------------TGTG-CTTTTCAGGTCAACATCGTCGAAATACCCGGCATTCTAGAGGTGCGCAAACAAGTGTC
droRho1 scf7180000780166:61420-61794 + TGGAGGAGCGCCTGCGGGGCCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTGGGCTAT----A------------GAC---------------------TA-ATATCTGGCAGGGCAGATCAGGGCCAAATGC--------ATATAGTACTGGC---------------------------------------------TCGTT-ATG--T-GCAGCAATGCATTAACTT-GTCT-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-AG------------CTT------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGCCT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCTGG------CAG--------------------------------------------------------------------------------------------------------------------------------TAGTAAGGCAG--------------CGAACGC------------------------AAG----------------A----GAGAGAATTACTAAATTTAAGCACTTGGCGA-------------------------------------------------------------------TGTG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAACAAGTGTC
droFic1 scf7180000453912:108491-108898 + TGGAGGAGCGCCTGCGAGGCCTGAAGATGAAGAGCAAGATTCTCGAGAAGGTGAGCCAT----A------------GAC-----------------CACGGG-CTATCTGGCAGGGCAGATCAGGGACAGAAGTATCTGAGTATATAGTAGTGGA---------------------------------------------TGGCT--AGTGC-GC--CCAAGCGTTAACTT-GTCT-CC---C-----------------AGGGCAGC----GGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCAACTGCCAAA--------CGAAATTTATAGATTTTAGC----ACACCAGGCT--------------GCATTAATTTCGTT-ATTAATAAATTGAA--GCGGGAAGGGGCGGG--G---------------TCGGACAACAA-------------------------------------------------------------------------AATAC-------AAACAGACAGTTGTAGTAAGA------------------------------------------------------------------------CAAAGAATTACTATATTTAAGCACTTGCCAA-------------------------------------------------------------------TGC---TTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTTGAGGTGCGCAAGCAGGTTTC
droKik1 scf7180000302706:619107-619477 + TGGAGGAGCGCCTGCGGGGCCTGAAGATGAAGAGCAAGATTCTTGAGAAGGTAAGCAGC----C------------GGCA---------------------A-ATAGCCGCCAGGTCAGACCA---------------------------------------------------------------------------------------------------CATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAC------------------------A-CTGCTGCTGGCCACCTGCCAAA--------GGGAATTTATAGCTTTTAGC----GCAC-AGCCT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGAT--GGCAGA--G------------TGGCCGGCCAACA--------------------------------------------------------------------------AGT-----------ACAGGCAG------TAAAGCAGA--------------CAAGGC------------------------A------------------A-GAGCCAAGAATTACTAAATTTAAGCACTTGCCGAA------------------------------------------------------------TCCGAATACA-TTTTTCAGGTCAACATCGTTGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTC
droAna3 scaffold_13340:17928164-17928632 + TGGAGGAGCGTCTGCGAGGACTTAAAATTAAGAGCAAGCTGCTCGAAAAGGTAAGCAA-----------------------------------------------ATCTTGCTCGA---AAA--GGTAAGC------------------A-----AATCTTTGAAATAATAACCGGGTCGGTGTAGAGACAGGTGCGGGTT-AT--TGG--G-GCACCGGGACATTAACTTTGTAT-CC---C-----------------TGGGCAACAAC-AGCCC---GACGATTGGGAAAC-TG------------CAA------------------------G-CC---TCTGGCCACCTGCCAAA--------CAGAATTTATAGCTTTTAGC----GCAC-AGTCT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGAT--GGCAGG--G----------------CGGCCGACAAATGAAAATAGTAAAATG--GGGAAA------------------------------------------------------------------ATAG------CAAA-----------------------------------------------------------------------GGC--AGCATTACTAAATTTAAGCACTAGGCGAGAGCGAATACTGATGAGAATTCGAATGTGAATGTAAATGAAAATACAAATG----------------CGAT-TTTTTCAGGTCAACATCGTTGAGATACCCGGCATTCTAGAAGTGCGCAAGCAGGTATC
droBip1 scf7180000396708:5449213-5449676 - TGGAGGAGCGTCTGCGAGGACTAAAAATGAAGAGCAAGCTGCTCGAGAAGGTAGGCCA-----A------------TAA------------A--------TACATATATGAAA-----------------------------------------------------TAATAACCGGGTCAGAGCAGAGACAGGTGCTTATT-ATTGGGG--C-AC--CGGGACATTAACTT-TTCATCC---C-----------------AGGGCAACAACGAGCCC---GACGATTGGGAAAC-TG------------CTA------------------------G-CC---ACTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----GCAC-AGTCT--------------GAATTAATTTCGTT-ATTAATAAATTGAT--GCGGGAT--GGCAGG--G----------------CGGCCGACAAATGAAAATAGTGAAATG--AGGAAA------------------------------------------------------------------ATAG------CAAA-----------------------------------------------------------------------GGC--AGCATTACTAAATTTAAGCACTAGACTATAGCGCATGCTAATGCGTATTCGAATGTGGATGTAAATGAAAATACGAATGCAATTCCGAATCT--------CTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAAGTGCGCAAGCAGGTATC
dp5 2:10150855-10151218 + TGGAGGAGCGTCTGCGCGGTCTGAAGATGAAGAGCAAGCTGCTCGAGAAGGTAAGATC-CCAGAAAGACAGACAG------------------------------------------------------------------------------------------------------------------------------------------------CCGCATTAACTT-GTCG-TCTCCCAGACAGCTCT---TGGCAGGGCAGC----TGCCC--TGCCGATGGGGAATC-TG------------CTGGCGAGGAGCTATCTGCATGCAGTCA-TG---GCTGGCCATCTGCCAGA--------CACAATTTATAGCTTTTAGC----ACAC-ATTCTGCATTCAGCATTCTGCATTAATTTCGTT-ATTAATAAATGAGT--GTAG----------------------------------------------------------------------------------------------------------------------A-A----------GTAG------CAAAA--------------------------------------------------------------------------GTGCATTACTAAATTTAAGCATCTGCA---------------------------------------------------------------TCT---TGCA-T-TTTTAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAGGTCTC
droPer2 scaffold_0:10330142-10330491 - TGGAGGAGCGTCTGCGCGGTCTGAAGATGAAGAGCAAGCTGCTCGAGAAGGTAAGATC-CCAGAAAGACAGACAG------------------------------------------------------------------------------------------------------------------------------------------------CCGCATTAACTT-GTCG-TCTCCCAGACAGCTCT---AGGCAGGGCAGC----TGCCC--TGTCGATGGGGAATC-TG------------CTGGCGAGGAGCTATCTGCATGCAGTCA-TG---GCTGGCCATCTGCCAGA--------CACAATTTATAGCTTTTAGC----ACAC-ATTCT--------------GCATTAATTTCGTT-ATTAATAAATGAGT--GTAG----------------------------------------------------------------------------------------------------------------------A-AG--TAGA--------------AAAA--------------------------------------------------------------------------TTGCATTACTAAATTTAAGCATCTGCA---------------------------------------------------------------TCT---TGCA-T-TTTTAGGTCAACATCGTCGAGATACCCGGCATTCTAGAAGTGCGCAAGCAGGTCTC
droWil2 scf2_1100000004943:11057114-11057494 + TGGAGGAGCGACTTAGGGGTCTGAAGATGAAGAGCAAGTTGCTCGAAAAGGTATGTTCT-AAAATAGGCCATCATCCGCAT--TCCTTAGTA--------TGCATATCTGCGTACTTGTATC--TGACAGATAC--------------------------------------------------------------TTTT------TGA--T----TAAGTGCATTAACTT-GTCT-CC---CTGTTAGTTTTTGTTGGCAGGGCATC----TT--C---TTCGATTGGGAAAC---------------------------------------------C---GCTGGCAATCTGCCCGG--------AAGAATTTATAGCTTTTAGCGCGCACAC-AGT--T----------TTTGCATTAATTTTGTTTATTAAA-AATGTAC--TTAG----------------------------------------------------------------------------------------------------------------------G-A----------ATAA------TTTTA-----------------------------------------------------------------------------GCTAACTAAATTTAAACACAACCC----------------------------------------------CCGAA------------------TGCATTTTTTCAGGTCAACATTGTCGAGATACCCGGCATTCTCGAAGTGCGCAAGCAGGTCTC
droVir3 scaffold_12822:1584631-1585024 + dvi_2540 TGGAGGAGCGTCTGCGCGGCCTGAAGCTGAAGAACAAGCTGCTCGAAAAGGTAACCAG-----A------------T--ATAAAT------A--------TATATATATAACA-------TATAGGCCAGGCCC--------------------------------------------------------AAGTACTTGT-----------T-GCCCAAGTGCATTAACTT-GTCG-CC---CAAATAGCTTT---TGGCAGGGCA-------GCTC---GTCGATTGGGAAATATGTTTTTTGATATGCTC------------------------A---GGCTCTGGCAAATTGCCCAAGA-----GCACAATTTATAGT-----------------------------------------ATTTGGTT-ATTAA---------------------------------------------------------------------ATG--TCGAAAATAGCTAAAGACAATGG-CTAAATTAAAGCTGA---TGTGCGCCAC-ATACACACACA-CGCACAGACAG------ACACA-------------------------------------------------------------------------CATGAATTTTTGAATTTT-------------------------------------------------------------------------------TGAA-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATACTCGAGGTACGCAAGCAGGTGTC
droMoj3 scaffold_6540:11528607-11529056 - TGGAAGAGCGTCTGCGCGGCCTGAAATTGAAGAACAAGCTGCTCGAAAAGGTATGCGTACTAGATAGGCAAA----G------GT------A--------TATATATAT--------AGATGTGGGCTAGGCAC--------------------------------------------------------ATGCACTTGT-----------T-GCCTAAGTGCATTAACTT-GTCG-CC---CAAATAGCTTT---TGGCAGGGCA-------GCTC---GTCGATTGGGAAATATGTTTTTTGATATGCTC------------------------A---GCCGTTGGCAAAATGCCCAAGA-----GCTCA-------------------------AGATCG----------TATATAGTATTCTGGTT-ATTAA---------------------------------------------------------------------ATG--TCGAAAATAGCTAAACACAATGG-CTAAAT----GTTGATGATGT---------AGTACA-----------CACAC------TCATACACA-----------------CGCATACTCTCTCACACTCGCACTCACA-CTCATACTCATACTCATTTGGTAAACGAATTTTTCAATTTTCGTAATT-------------------------------------------------------------------------TTG-GCTTTCAGGTCAACATCGTTGAGATACCTGGCATACTCGAAGTACGCAAGCAGGTCTC
droGri2 scaffold_14624:2626208-2626577 + TGGAGGAGCGTCTGCGTGGCTTAAAAATGAAGAGCAAGCTGCTTGAAAAGGTATTATA------------------TGTTT--T----TGAA--------TACATATGT----------------------------------------A---------------------------------------------CTTGGTTGT------------TAAGTGCATTAACTT-GTCT-CC---CAAATAGCTTT---TGGCAGGGCA-------GCTC--GACGGATTGGGAAAC-TGTTTTT----------------------------------A---TTTTTTGGCACATTGCCCGAAAAATAGGCAGCATTT----------------------------------------ATAG-TATTTGGTT-ATTAACGAAACTAA------------------------------------------------------------ATGCCTCGAAAATAGCCAAAGACAATGGGCCAAATTGAATGCGA---TG----------TGTGCA-----------T----------------------------------------------------------------------------------ATGCCAAATGAATTTGTA-ATTTTTGTATTTGGTTT---------------------------------------------------------------T---TGTA-TTTTTCAGGTCAACATCGTTGAGATACCTGGCATACTCGAGGTACGCAAGCAAGTATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTAC----A------------TGCA--------------------TACATATCTGGCTGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTAT------GGG--C-GCCGCTAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GTGTACACAG--TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AATGGCTGAGAATTACTATATTTAAGCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATACCCGGC..........................2513.00300300000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCCGGC..........................2213.00300300000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCC.............................1911.00100100000000000000
......................................................GCTAC----A------------TGCA--------------------TACATATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................GGTCTGAAGATGAAGAGCAAGATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
...........CTGCGTGGTCTGAAGATGAAGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATACCCGGCATTCTAGG..................2311.00100100000000000000
droSec2
TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTAC----A------------TGCA--------------------TACATATCTGGCTGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTAT------GGG--C-GCCGCTAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GTGTACACAG--TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AATGGCTGAGAATTACTATATTTAAGCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCCGGC..........................2211.0010010
............TGCGTGGTCTGAAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................TGGTCTGAAGATGAAGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAG..................................................2311.0010010
dm3
TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAAAAGGTAGGCCAA----A------------TGCA--------------------AACATATCTCGCTGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTAT------GGG--C-GCCGCTAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AAGCTG----------TGGGCATTAATTTTGTT-ATTAATAAATTAAA-TGCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GAGTACACAG--TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AATGGCTGAGAATTACTATATTTAAGCGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................GAGCAAGATCCTCGAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGGTGCGCAAGCAAGTGTC2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGAGGTGCGCAAGCAAGT...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATA................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........GCCTGCGTGGTCTGAAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATGAAGAGCAAGATCCTCGAAAAGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGGCATTCTAGAGGTGCGCA..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTGGTCTGAAGATGAAGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................GGTCTGAAGATGAAGAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGA-------------------------------------------------------------------TGCG-TTTTTCAG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........CGCCTGCGTGGTCTGAAGATGAAGAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA---------------------------------------------------------------AATGGCTGAGAATTAC......................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................GGTCTGAAGATGAAGAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGCGCCTGCGTGGTCTGAAGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATTACTATATTTAAGCGCTTG......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................AAGATGAAGAGCAAGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....GAGCGCCTGCGTGGTCTGAAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGGTCTGAAGATGAAGAGCAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................TGGTCTGAAGATGAAGAGCAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CGTGGTCTGAAGATGAAGAGCAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................ACCTGCCAAA--------CGGAATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATGAAGAGCAAGATCCTCGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCCGGC..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCCA------------------TGCAT--GTATTTACA--------TACATATCTGGGCGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TCAT------GGG--C-GCCGCCAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AAAACAG-TGCAGTTGGGAACC-TG------------CAA------------------------AACA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTAAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GAGTACA-------AATAGATAG------CAAAGCTAA---------------------------------------------------------------AAAGGCTGAGAATTACTATATTTAAGAGCTTGACGA-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................GAGCAAGATCCTCGAGAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATACCCGGCATTCTAGAGGT...............2411.0010000100
.........GCCTGCGTGGTCTGAAGATGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGAGGTGCGCAAGCAAGT...2211.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGTCGAGATACCCGGC..........................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATACCCGGCATTCTAGAGGTGCGC...........2711.0010000010
droYak3
TGGAGGAGCGCCTGCGTGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCCA------------------TACATAAAT------A--------TACATATCTGTGAGGGCAGATCAGGGAGAGATGC--------------------------------------------------------------TTTT------GGG--C-GCCGCCAGGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGAAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TGGGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGAACAGGGCAGA-----------------------------------------------------------------------------------------------------GAGTACACAGA-TACACAGATAG------CAAAGCTAA---------------------------------------------------------------AAAGGCTGAGAATTACTATATTTAAGCACTTGGCGA-------------------------------------------------------------------TGCA-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................AGCAAGATCCTCGAGAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000
...............................GAGCAAGATCCTCGAGAAGGTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202000000000
........CGCCTGCGTGGTCTGAAGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............GTGGTCTGAAGATGAAGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
TGGAGGAGCGCCTGCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
......................GAAGATGAAGAGCAAGATCCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
.........................GATGAAGAGCAAGATCCTCGAGAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATACC..............................2111.00101000000000
...........................TGAAGAGCAAGATCCTCGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTAGAGGTGCGCA..........1911.00101000000000
.GGAGGAGCGCCTGCGTGGTCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGGCATTCTAGAGGTGCG............2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATACCCGGCATTC......................1911.00101000000000
..GAGGAGCGCCTGCGTGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........CCTGCGTGGTCTGAAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGTCGAGATACCCGGCA.........................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGAGGTGCGCAAGCAAGTGTC2511.00100000010000
.............GCGTGGTCTGAAGATGAAGAGCAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATACCCGGCA.........................2611.00101000000000
..............CGTGGTCTGAAGATGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCATTCTAGAGGTGCGCAAGC.......2311.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGCAAGCAAGTGTC1811.00101000000000
..............................AGAGCAAGATCCTCGAGAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
........................AGATGAAGAGCAAGATCCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................GAGCAAGATCCTCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACATCGTCGAGATACCCGGC..........................2611.00101000000000
...........................................................................................................................GGGAGAGATGC--------------------------------------------------------------TTTT------GAT--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100000100000
droEug1
TGGAGGAGCGCCTGCGTGGTCTGAAAATGAAGAGCAAGATCCTCGAAAAGGTAAGACA-----A------------TA-----GT------ATATAGCC-TA-CTATCTGTCAGGGCAGATCAGGGAGAGAGGT--------------------------------------------------------------GTACC-A-T-AGA--ATACC-TCAAGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----AGCTC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACATGCCAAA--------CGGAATTTATAGCTTTTAGC----GCAC-AGGCTG----------TGTGCATTAATTTCGTT-ATTAATAAATTGATGTGCGGGACAGGACAGA--G--------ATAGT----GGCCAA-----------------------------------------------------------------------------GAAAACAGACCAAACAGACAG------TAAAGCAGATATATATCTAAGACAAAGGC------------------------A------------------AACTGCAGAGAATTACTATATTTAAGCACTTGGCTA-------------------------------------------------------------------TGCGTATTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotal
No Reads
droBia1
TGGAGGAACGTCTGCGAGGTCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAAGATA------------------CGCAT--T--------------CGTA-CTATCTGGCAGGGCAGATCAGGGCCAGCGGC--------------------------------------------------------------GTAT------AGG--T-GCCGCCGTGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TTTGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGACAGGGCGCAGAG----------------CGGGCAGCTC-------------------------------------------------------------------------AATAC-------ATATAGACA----TAGTAAGGCAG--------------CGCGGGC------------------------A-G----------------AACACCAGAGAATTACTATATTTAAGCACTGGGCTG-------------------------------------------------------------------TGCG-TTTTTCAGGTCAACATCGTTGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotal
No Reads
droTak1
TGGAGGAGCGCCTGCGGGGTCTGAAGATGAAGAGCAAAATCCTCGAGAAGGTAAGATA--------------------CATAGAT------ATGTGCCCGTA-ATATCTGGCAGGGCAGATCAGGGACAG-----------------------------------------------------------------------------------------AGGCATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAG------------------------AGCA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGGCTG----------TTTGCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGACAGGG------GCGGACTGGGTGGT----GGCCGACA-----------------------------------------------------------------------CAAAGCACAAAA--AATACAGACAG------TAAAGC------------------------------------------------------------------------TGAGAATTACTATATTTAAGCACTCGGCTA-------------------------------------------------------------------TGCG-CTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotal
No Reads
droEle1
TGGAGGAGCGCCTGCGGGGCCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTAGGCTAT----A------------GAC----------------------CCATATCTGGCAGGGCAGATCAGGGATAGA-GC-----------TAGTACTAGC-----------------------------------------TCGTCCGTC-AGG--T-GCAGCCAAGCATTAACTT-GTCT-CC---C-----------------AGGGCAGC----AGCTC---GTCGATTGGGAAAC-TG------------CAA------------------------A-TA---GCTGGCCATCTGCCAAT--------CGGAATTTATAGCTTTTAGC----GCAC-AGACT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGCT--G------------------------------------------------------------------------------------------------------------------------------------CAGTAAGGCAG--------------CGAAGGC------------------------A-G----------------A----GAGAGAATTACTAAATTTAAGCACTTGGCGA-------------------------------------------------------------------TGTG-CTTTTCAGGTCAACATCGTCGAAATACCCGGCATTCTAGAGGTGCGCAAACAAGTGTCSizeHit CountTotal NormTotal
No Reads
droRho1
TGGAGGAGCGCCTGCGGGGCCTGAAGATGAAGAGCAAGATCCTCGAGAAGGTGGGCTAT----A------------GAC---------------------TA-ATATCTGGCAGGGCAGATCAGGGCCAAATGC--------ATATAGTACTGGC---------------------------------------------TCGTT-ATG--T-GCAGCAATGCATTAACTT-GTCT-CC---C-----------------AGGGCAGC----AGCCC---GTCGATTGGGAAAC-AG------------CTT------------------------A-CA---GCTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----ACAC-AGCCT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCTGG------CAG--------------------------------------------------------------------------------------------------------------------------------TAGTAAGGCAG--------------CGAACGC------------------------AAG----------------A----GAGAGAATTACTAAATTTAAGCACTTGGCGA-------------------------------------------------------------------TGTG-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAACAAGTGTCSizeHit CountTotal NormTotal
No Reads
droFic1
TGGAGGAGCGCCTGCGAGGCCTGAAGATGAAGAGCAAGATTCTCGAGAAGGTGAGCCAT----A------------GAC-----------------CACGGG-CTATCTGGCAGGGCAGATCAGGGACAGAAGTATCTGAGTATATAGTAGTGGA---------------------------------------------TGGCT--AGTGC-GC--CCAAGCGTTAACTT-GTCT-CC---C-----------------AGGGCAGC----GGCCC---GTCGATTGGGAAAC-TG------------CAA------------------------A-CA---GCTGGCCAACTGCCAAA--------CGAAATTTATAGATTTTAGC----ACACCAGGCT--------------GCATTAATTTCGTT-ATTAATAAATTGAA--GCGGGAAGGGGCGGG--G---------------TCGGACAACAA-------------------------------------------------------------------------AATAC-------AAACAGACAGTTGTAGTAAGA------------------------------------------------------------------------CAAAGAATTACTATATTTAAGCACTTGCCAA-------------------------------------------------------------------TGC---TTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTTGAGGTGCGCAAGCAGGTTTCSizeHit CountTotal NormTotal
No Reads
droKik1
TGGAGGAGCGCCTGCGGGGCCTGAAGATGAAGAGCAAGATTCTTGAGAAGGTAAGCAGC----C------------GGCA---------------------A-ATAGCCGCCAGGTCAGACCA---------------------------------------------------------------------------------------------------CATTAACTT-GTCG-CC---C-----------------AGGGCAGC----TGCCC---GTCGATTGGGAAAC-TG------------CAC------------------------A-CTGCTGCTGGCCACCTGCCAAA--------GGGAATTTATAGCTTTTAGC----GCAC-AGCCT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGAT--GGCAGA--G------------TGGCCGGCCAACA--------------------------------------------------------------------------AGT-----------ACAGGCAG------TAAAGCAGA--------------CAAGGC------------------------A------------------A-GAGCCAAGAATTACTAAATTTAAGCACTTGCCGAA------------------------------------------------------------TCCGAATACA-TTTTTCAGGTCAACATCGTTGAGATACCCGGCATTCTAGAGGTGCGCAAGCAAGTGTCSizeHit CountTotal NormTotal
No Reads
droAna3
TGGAGGAGCGTCTGCGAGGACTTAAAATTAAGAGCAAGCTGCTCGAAAAGGTAAGCAA-----------------------------------------------ATCTTGCTCGA---AAA--GGTAAGC------------------A-----AATCTTTGAAATAATAACCGGGTCGGTGTAGAGACAGGTGCGGGTT-AT--TGG--G-GCACCGGGACATTAACTTTGTAT-CC---C-----------------TGGGCAACAAC-AGCCC---GACGATTGGGAAAC-TG------------CAA------------------------G-CC---TCTGGCCACCTGCCAAA--------CAGAATTTATAGCTTTTAGC----GCAC-AGTCT--------------GCATTAATTTCGTT-ATTAATAAATTGAT--GCGGGAT--GGCAGG--G----------------CGGCCGACAAATGAAAATAGTAAAATG--GGGAAA------------------------------------------------------------------ATAG------CAAA-----------------------------------------------------------------------GGC--AGCATTACTAAATTTAAGCACTAGGCGAGAGCGAATACTGATGAGAATTCGAATGTGAATGTAAATGAAAATACAAATG----------------CGAT-TTTTTCAGGTCAACATCGTTGAGATACCCGGCATTCTAGAAGTGCGCAAGCAGGTATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................GCAAGCTGCTCGAAAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGTTGAGATACCCGGC..........................2212.002020000
...............................GAGCAAGCTGCTCGAAAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................GCAAGCTGCTCGAAAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGAAGTGCGCAAGCAGGT...2311.001010000
droBip1
TGGAGGAGCGTCTGCGAGGACTAAAAATGAAGAGCAAGCTGCTCGAGAAGGTAGGCCA-----A------------TAA------------A--------TACATATATGAAA-----------------------------------------------------TAATAACCGGGTCAGAGCAGAGACAGGTGCTTATT-ATTGGGG--C-AC--CGGGACATTAACTT-TTCATCC---C-----------------AGGGCAACAACGAGCCC---GACGATTGGGAAAC-TG------------CTA------------------------G-CC---ACTGGCCACCTGCCAAA--------CGGAATTTATAGCTTTTAGC----GCAC-AGTCT--------------GAATTAATTTCGTT-ATTAATAAATTGAT--GCGGGAT--GGCAGG--G----------------CGGCCGACAAATGAAAATAGTGAAATG--AGGAAA------------------------------------------------------------------ATAG------CAAA-----------------------------------------------------------------------GGC--AGCATTACTAAATTTAAGCACTAGACTATAGCGCATGCTAATGCGTATTCGAATGTGGATGTAAATGAAAATACGAATGCAATTCCGAATCT--------CTTTTCAGGTCAACATCGTCGAGATACCCGGCATTCTAGAAGTGCGCAAGCAGGTATCSizeHit CountTotal NormTotal
No Reads
dp5
TGGAGGAGCGTCTGCGCGGTCTGAAGATGAAGAGCAAGCTGCTCGAGAAGGTAAGATC-CCAGAAAGACAGACAG------------------------------------------------------------------------------------------------------------------------------------------------CCGCATTAACTT-GTCG-TCTCCCAGACAGCTCT---TGGCAGGGCAGC----TGCCC--TGCCGATGGGGAATC-TG------------CTGGCGAGGAGCTATCTGCATGCAGTCA-TG---GCTGGCCATCTGCCAGA--------CACAATTTATAGCTTTTAGC----ACAC-ATTCTGCATTCAGCATTCTGCATTAATTTCGTT-ATTAATAAATGAGT--GTAG----------------------------------------------------------------------------------------------------------------------A-A----------GTAG------CAAAA--------------------------------------------------------------------------GTGCATTACTAAATTTAAGCATCTGCA---------------------------------------------------------------TCT---TGCA-T-TTTTAGGTCAACATCGTCGAGATACCCGGCATTCTAGAGGTGCGCAAGCAGGTCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACATCGTCGAGAT.................................1911.0010000100000
.........................GATGAAGAGCAAGCTGCTCGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCGAGATACCCGGCATTCTAGAGG................2811.0010010000000
droPer2
TGGAGGAGCGTCTGCGCGGTCTGAAGATGAAGAGCAAGCTGCTCGAGAAGGTAAGATC-CCAGAAAGACAGACAG------------------------------------------------------------------------------------------------------------------------------------------------CCGCATTAACTT-GTCG-TCTCCCAGACAGCTCT---AGGCAGGGCAGC----TGCCC--TGTCGATGGGGAATC-TG------------CTGGCGAGGAGCTATCTGCATGCAGTCA-TG---GCTGGCCATCTGCCAGA--------CACAATTTATAGCTTTTAGC----ACAC-ATTCT--------------GCATTAATTTCGTT-ATTAATAAATGAGT--GTAG----------------------------------------------------------------------------------------------------------------------A-AG--TAGA--------------AAAA--------------------------------------------------------------------------TTGCATTACTAAATTTAAGCATCTGCA---------------------------------------------------------------TCT---TGCA-T-TTTTAGGTCAACATCGTCGAGATACCCGGCATTCTAGAAGTGCGCAAGCAGGTCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCGTCGAGATACCCGGC..........................2212.002200000
.........GTCTGCGCGGTCTGAAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGTGCGCAAGCAGGT...1911.001000001
droWil2
TGGAGGAGCGACTTAGGGGTCTGAAGATGAAGAGCAAGTTGCTCGAAAAGGTATGTTCT-AAAATAGGCCATCATCCGCAT--TCCTTAGTA--------TGCATATCTGCGTACTTGTATC--TGACAGATAC--------------------------------------------------------------TTTT------TGA--T----TAAGTGCATTAACTT-GTCT-CC---CTGTTAGTTTTTGTTGGCAGGGCATC----TT--C---TTCGATTGGGAAAC---------------------------------------------C---GCTGGCAATCTGCCCGG--------AAGAATTTATAGCTTTTAGCGCGCACAC-AGT--T----------TTTGCATTAATTTTGTTTATTAAA-AATGTAC--TTAG----------------------------------------------------------------------------------------------------------------------G-A----------ATAA------TTTTA-----------------------------------------------------------------------------GCTAACTAAATTTAAACACAACCC----------------------------------------------CCGAA------------------TGCATTTTTTCAGGTCAACATTGTCGAGATACCCGGCATTCTCGAAGTGCGCAAGCAGGTCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......GCGACTTAGGGGTCTGAAGATGAAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00320100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATTGTCGAGATACCCGGC..........................2212.00220000
....................CTGAAGATGAAGAGCAAGTTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATACCCGGCATT.......................1811.00110000
.................GGTCTGAAGATGAAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............GGGGTCTGAAGATGAAGAGCAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
.........GACTTAGGGGTCTGAAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.................................GCAAGTTGCTCGAAAAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................................CAAGTTGCTCGAAAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................AGATGAAGAGCAAGTTGCTCGAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
......................GAAGATGAAGAGCAAGTTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACATTGTCGAGATACCC.............................2311.00110000
.......GCGACTTAGGGGTCTGAAGATGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCCGGCATTCTCGAAGT...............2111.00100100
......................GAAGATGAAGAGCAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACATTGTCGAGAT.................................1911.00110000
.............TAGGGGTCTGAAGATGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
droVir3
TGGAGGAGCGTCTGCGCGGCCTGAAGCTGAAGAACAAGCTGCTCGAAAAGGTAACCAG-----A------------T--ATAAAT------A--------TATATATATAACA-------TATAGGCCAGGCCC--------------------------------------------------------AAGTACTTGT-----------T-GCCCAAGTGCATTAACTT-GTCG-CC---CAAATAGCTTT---TGGCAGGGCA-------GCTC---GTCGATTGGGAAATATGTTTTTTGATATGCTC------------------------A---GGCTCTGGCAAATTGCCCAAGA-----GCACAATTTATAGT-----------------------------------------ATTTGGTT-ATTAA---------------------------------------------------------------------ATG--TCGAAAATAGCTAAAGACAATGG-CTAAATTAAAGCTGA---TGTGCGCCAC-ATACACACACA-CGCACAGACAG------ACACA-------------------------------------------------------------------------CATGAATTTTTGAATTTT-------------------------------------------------------------------------------TGAA-TTTTTCAGGTCAACATCGTCGAGATACCCGGCATACTCGAGGTACGCAAGCAGGTGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACATCGTCGAGATACCCGGCA.........................2711.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TTTTTCAGGTCAACATCGTC......................................2211.001000000000000000000000000000010000000000000000000000000000000000
...........CTGCGCGGCCTGAAGCTGAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCGAGGTACGCAAGCAG.....2111.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTCGAGATACCCGGCATACT.....................2411.001010000000000000000000000000000000000000000000000000000000000000
..........TCTGCGCGGCCTGAAGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGAGGTACGCAAGCAGGT...2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTCAACATCGTCGAGACC................................2211.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCGAGGTACGCAAGCAGGT...2311.001000000000000000001000000000000000000000000000000000000000000000
......................GAAGCTGAAGAACAAGCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACTCGAGGTACGCAA.........2011.001010000000000000000000000000000000000000000000000000000000000000
............TGCGCGGCCTGAAGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGAGGTACGCAAGCAG.....2011.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGTACGCAAGCAGG....1811.001000000000000000000000000000000000000000000000000000000000000100
.....................TGAAGCTGAAGAACAAGCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAACATCGTCGAGATA................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........GTCTGCGCGGCCTGAAGCTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATACCCGGCATACTCGAGGT...............2411.001000000000000001000000000000000000000000000000000000000000000000
......................GAAGCTGAAGAACAAGCTGCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...AGGAGCGTCTGCGCGGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........CGTCTGCGCGGCCTGAAGCTGAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATACCC.............................2211.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACATCGTCGAGATACC..............................2111.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTCGAGATACCCGGCATA.......................2211.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
TGGAAGAGCGTCTGCGCGGCCTGAAATTGAAGAACAAGCTGCTCGAAAAGGTATGCGTACTAGATAGGCAAA----G------GT------A--------TATATATAT--------AGATGTGGGCTAGGCAC--------------------------------------------------------ATGCACTTGT-----------T-GCCTAAGTGCATTAACTT-GTCG-CC---CAAATAGCTTT---TGGCAGGGCA-------GCTC---GTCGATTGGGAAATATGTTTTTTGATATGCTC------------------------A---GCCGTTGGCAAAATGCCCAAGA-----GCTCA-------------------------AGATCG----------TATATAGTATTCTGGTT-ATTAA---------------------------------------------------------------------ATG--TCGAAAATAGCTAAACACAATGG-CTAAAT----GTTGATGATGT---------AGTACA-----------CACAC------TCATACACA-----------------CGCATACTCTCTCACACTCGCACTCACA-CTCATACTCATACTCATTTGGTAAACGAATTTTTCAATTTTCGTAATT-------------------------------------------------------------------------TTG-GCTTTCAGGTCAACATCGTTGAGATACCTGGCATACTCGAAGTACGCAAGCAGGTCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCGTTGAGATACCTGGC..........................2111.001100000
.................GGCCTGAAATTGAAGAACAAGCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................CTGAAATTGAAGAACAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TGGAGGAGCGTCTGCGTGGCTTAAAAATGAAGAGCAAGCTGCTTGAAAAGGTATTATA------------------TGTTT--T----TGAA--------TACATATGT----------------------------------------A---------------------------------------------CTTGGTTGT------------TAAGTGCATTAACTT-GTCT-CC---CAAATAGCTTT---TGGCAGGGCA-------GCTC--GACGGATTGGGAAAC-TGTTTTT----------------------------------A---TTTTTTGGCACATTGCCCGAAAAATAGGCAGCATTT----------------------------------------ATAG-TATTTGGTT-ATTAACGAAACTAA------------------------------------------------------------ATGCCTCGAAAATAGCCAAAGACAATGGGCCAAATTGAATGCGA---TG----------TGTGCA-----------T----------------------------------------------------------------------------------ATGCCAAATGAATTTGTA-ATTTTTGTATTTGGTTT---------------------------------------------------------------T---TGTA-TTTTTCAGGTCAACATCGTTGAGATACCTGGCATACTCGAGGTACGCAAGCAAGTATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:26 AM