ID:dsi_30236 |
Coordinate:2r:5811514-5811571 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
five_prime_UTR [2r_5811384_5811468_+]; CDS [2r_5811469_5811513_+]; exon [2r_5811384_5811513_+]; exon [2r_5811572_5812304_+]; CDS [2r_5811572_5812304_+]; intron [2r_5811514_5811571_+]
No Repeatable elements found
| ##################################################----------------------------------------------------------################################################## CAAAAATGATGGAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGGTAACCATTAGATCCCAGACCATTGAGCATCCAATGACCATCTCAGTCGACCTTTCAGCTATCGGAGAGCGACGATGATGGCGTTTACACGCCGCTGCAGCGACCTGA **************************************************.................((((((((......))))).........)))..........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR902008 ovaries |
O001 Testis |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
GSM343915 embryo |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................ATCGCAGAGCGTCGATGATG............................ | 20 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........TGGAACTGCACGCAAATGACG................................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............AACTGCACGCAAATGACGTTG............................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................GTTTACACGCCGCTGCAGC....... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................TCGGAGAGCGACGATGATGGC.......................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................CGCAAATGACGTTGACCTGGAGGACG................................................................................................................. | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............TGCACGCAAATGACGTTGAC........................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................GCAAATGACGTTGACCTGGA...................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................GTTGACCTGGAGGACGGCGAGG........................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............ACTGCACGCAAATGACGTTGAC........................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................TGACGTTGACCTGGAGGA................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........ATGGAACTGCACGCAAATGACGTTG............................................................................................................................. | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........TGGAACTGCACGCAAATGACGTTGACC.......................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................TTTACACGTTGCTGCAGTGACC... | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................TAACCTGGAGGAAGGCGGG............................................................................................................ | 19 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................TGGATGACTGCGAGATAAC....................................................................................................... | 19 | 3 | 13 | 0.08 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................TGGAGCGCGACGATGAT............................. | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
GTTTTTACTACCTTGACGTGCGTTTACTGCAACTGGACCTCCTGCCGCTCCATTGGTAATCTAGGGTCTGGTAACTCGTAGGTTACTGGTAGAGTCAGCTGGAAAGTCGATAGCCTCTCGCTGCTACTACCGCAAATGTGCGGCGACGTCGCTGGACT
**************************************************.................((((((((......))))).........)))..........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
M023 head |
|---|---|---|---|---|---|---|---|---|---|
| .................................................................................GTTATTGGTAGAGTCAGATAGAAAGT................................................... | 26 | 3 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 |
| ..............................................................................TAGGTTACTGGTAGAGACAGCT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| ..................................................................................TTATTGGTAGAGTCAGATAGAAAGT................................................... | 25 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ................................................................................................AGATGGCAACTCGATAGCCTCT........................................ | 22 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...................................................................................TATTGGTAGAGTCAGATAGAAAGT................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ..................................................................................................ATGGCAACTCGATAGCCTCT........................................ | 20 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............................................................GGATCTGGTAACTCGGGGGT........................................................................... | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 1 | 0 |
| ...................................................................................................TGGCAACTCGATAGCCCCT........................................ | 19 | 3 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 |
| ................................................................................................................................ACCGCAAATGTCCGCCCAC........... | 19 | 3 | 15 | 0.07 | 1 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 12:00 AM