ID:

dsi_30226

Coordinate:

3r:10908069-10908218 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAGAATTTGTGTGAATCATGGCTACGTGATAAACTGGCAATGGTTGCGGGTAAATAAATCGTATATATAGAAACAATACGTCCTAGGCTGGCTATAAATGCATATAAACACATACTCATTACTGCATGTATAGTAGATATATTCACGCTTCGCTGTTTTTTTTTTCTATTCTGTCTTAGAGATTAGATGGCGCCAGAATAAAAAATAATTTTTCATGACCTTAGTGCGGCAGTGGGATGATCTCATTGA ************************************************..........(((((...........))))).......(((((((((.(((((....................))))).))))).................((((((((....((((((........))))))..))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902008 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
................................................................TATATAGAAAGAATACGTCCTAGGC.................................................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................GAATAAAAAATAATTTTT....................................	18	0	1	1.00	1	1	0	0	0	0	0
..........................................GGTCGCGGGTAAATA.................................................................................................................................................................................................	15	1	3	0.33	1	0	0	1	0	0	0
..............................TAAACTTGCAATGGTTTCTGG.......................................................................................................................................................................................................	21	3	4	0.25	1	0	0	0	1	0	0
...................................................................................................................................................................................GTGATTCGATGGCGTCAGAA...................................................	20	3	7	0.14	1	0	0	0	0	1	0
................TCATGGCTAAGTGGTAAA........................................................................................................................................................................................................................	18	2	8	0.13	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................AATGCGTCAGTGGGCTGATC.......	20	3	12	0.08	1	0	0	1	0	0	0
................................................................................................................................................................................................................................CTGCGTCAGTGGGCTGATC.......	19	3	19	0.05	1	0	0	1	0	0	0

Anti-sense strand reads

AATCTTAAACACACTTAGTACCGATGCACTATTTGACCGTTACCAACGCCCATTTATTTAGCATATATATCTTTGTTATGCAGGATCCGACCGATATTTACGTATATTTGTGTATGAGTAATGACGTACATATCATCTATATAAGTGCGAAGCGACAAAAAAAAAAGATAAGACAGAATCTCTAATCTACCGCGGTCTTATTTTTTATTAAAAAGTACTGGAATCACGCCGTCACCCTACTAGAGTAACT ************************************************..........(((((...........))))).......(((((((((.(((((....................))))).))))).................((((((((....((((((........))))))..))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	M025 embryo	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis
................AGTACTGAAGCACTATTT........................................................................................................................................................................................................................	18	2	12	5.50	66	23	22	21	0	0	0	0	0	0
..............................................................................................................................................................................AGAATCTCTAATCTACCG..........................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.............................................................................................................................................TAAGTGCGAAGCTACAAGAGA........................................................................................	21	3	4	0.25	1	0	0	0	0	1	0	0	0	0
..............................................................................AGTAGGATCCAACCGATAT.........................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................AAAAAGTGCTGGAAT..........................	15	1	16	0.06	1	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................AAAAAACGATATGACAGACT.......................................................................	20	3	19	0.05	1	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................AAAAAAAGAGACGACAGAAGC......................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................AAAAAAAAAAATGTAAGACAGAAT.......................................................................	24	3	20	0.05	1	0	0	0	0	0	1	0	0	0

Generated: 04/24/2015 at 10:51 AM