dsi_30214

GGGTATAAAAAACAACGTTTTTACTTCAAGTGAATATAATCTTCGGCCTGCCGAATCTTGCTTTGTTTTATGTTGAAATAAACTTGTGCTGCGCTGCGTAGGTGTCACTATAGTTGGGCGCAGGCCGCCTCACCGTGAGGCTCACTAGGCATACGATTTATTTTTTCCTTCCTTATTTTATTGAGGTGTTTTATTTTCAGATGTTTCTTTCGCATCTGGCCTAAATTTGGCTAGAACCGCAACCAATGAT ***************************************************************.......................(((((((((((((......)))).))..)))))))*****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs
.....TAAAAAACAACGTTTTTACTTCAAGTGAA........................................................................................................................................................................................................................	29	0	1	3.00	3	0	2	0	1	0	0	0
.....................................................................................................GTGTCACTATAGTTGGGCGCAG...............................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................TAGTGAGGTGTTTTATTTTCAGATGT..............................................	26	1	1	1.00	1	1	0	0	0	0	0	0
..............................................................................TAAACTTGTGCTGCGCTGCGTAGGTG..................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................TAAATTTGGCTAGAACCGCAACCAATG..	27	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................TCACTATAGTTGGGCGCAGGCCGC..........................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
....................TTACTTCAAGTGAATATAATCTTCGGC...........................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................TTTTATGTTGAAATAAACTTGTGCTGCGC............................................................................................................................................................	29	0	1	1.00	1	0	0	1	0	0	0	0
.................................................GCCGAATCTTGCTTTGTTT......................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTTGGCTAGAACCGCAACC......	20	0	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................TGCGTAGGTGTCACTATAGTTGGGCG..................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0
.....................TATTTCAAGTGAATATAATCTTCGGCC..........................................................................................................................................................................................................	27	1	1	1.00	1	0	0	0	0	0	1	0
..............................................................................TAAACTTGTGCTGCGCTGCGTAGGT...................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................TGTTTTATTTTCAGATGTTTCTTTCGCA....................................	28	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................TTTTCGGATGTTTCTCTGGCA....................................	21	3	5	0.20	1	1	0	0	0	0	0	0
........................................................................................................................................................AGGATTTATTGTTTCCTTACT.............................................................................	21	3	5	0.20	1	0	0	1	0	0	0	0
...........................AAGTGTATATAATCT................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0	0
................................................................................................................GTTGGGCGCCGGCCGA..........................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................................................................ATTTTATTGGGGTGT.............................................................	15	1	20	0.05	1	1	0	0	0	0	0	0
...............................................................TGTTCTATGTTGAAA............................................................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0
...............................................................TCTTTTATCTTGGAATAAAC.......................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	1

CCCATATTTTTTGTTGCAAAAATGAAGTTCACTTATATTAGAAGCCGGACGGCTTAGAACGAAACAAAATACAACTTTATTTGAACACGACGCGACGCATCCACAGTGATATCAACCCGCGTCCGGCGGAGTGGCACTCCGAGTGATCCGTATGCTAAATAAAAAAGGAAGGAATAAAATAACTCCACAAAATAAAAGTCTACAAAGAAAGCGTAGACCGGATTTAAACCGATCTTGGCGTTGGTTACTA *****************************************************************************************************************************.......................(((((((((((((......)))).))..)))))))***************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.....................ATGAAGTTCACTTATATTAGAAGCCG...........................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................TCCGGCGGTGGGGCTCTCCG.............................................................................................................	20	3	5	0.60	3	0	3	0	0	0
.......................................................................................................................................................CTGCTAAATCAAAAAGGAA................................................................................	19	2	4	0.25	1	0	0	1	0	0
......................................................................................................................................................................................................................................GATGTTGGTGCTGGTTACTA	20	3	9	0.11	1	0	0	0	0	1
......................................................................................................................................................TAGGCTATATAAAAAAGGAAA...............................................................................	21	3	9	0.11	1	0	1	0	0	0
.........................................................................................................................TCCGGCGGTGGGGCTCTCC..............................................................................................................	19	3	10	0.10	1	0	1	0	0	0
.........................................................................................................................................................................................................ACTTAGAAAGCGTAGACCCG.............................	20	3	12	0.08	1	0	0	0	1	0
......................................TAAAAGACGGACGGCATAGA................................................................................................................................................................................................	20	3	15	0.07	1	0	1	0	0	0
..........................................................................................................................................................................................................................................TTGGTGCTGGTTACTA	16	2	20	0.05	1	0	0	1	0	0
..........TGGTTGCAGAAATGAA................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	4:371497-371746 +	dsi_30214	GGGTATAAAAAACAA-----CGTTTTTACTTCAAGTGAATATAATCTTCGGCCTGCCGAATCTTGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTATGTTGA--A-ATAAAC---------------TTGTGCTGCGCTGCGTAGGTGTCACTATAGTTGGGCGCAG------------------------------GCCGCCTCACCGTG---------------------------AGGCT---CACTAGGCATACGATTTATTTT---TTCCTTCCTTATTTTA-TTGA-GGTGTTTTAT--------TTTCAGAT-GTTTC-TTTCGCATCTGGCCTAAATTTGGCTAGAACCGCAACCAATGAT
droSec2	scaffold_30:276480-276711 +		GGGTATAAAAAACAA-----CGTTTTTACTTCAAGTGAATATAATCTTCGGCCTGCCGAATCTT-----------TGCTT------------------------------------------------------------------------------------------------------------------------------------------TGTTTTATGTTGA--A-ATAAAC---------------TTGTGC-----TGCCTAGGTGTCACTATAGTTGGGCGCAG------------------------------GCCGCCTTAC-------------------------CCGTG-AGGCT---CACTAGGCATACGATTTATTTT--TTTCTTCCCTTATTTTA-TTAAGGGTGTTTTAT------T-TTTCAGATGGTTTCTTTCCGCATCTGGGCCTAATTTGG--------------------
dm3	chr4:550147-550368 +		GGGTATAAAAAAGAA-----CGTTTTTACTGCAAGGGAATATAATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-T------------------------------------------------------CTTTAGTTAGGCGCCGTCGATATAGGCATATTATCGTATCTGCTGTACCGCCTTATTGTA---------------------------AGGCT---AACTAGGCATACGAATTATTTT---TTCATACTTAACCTTA-TTAA-GGTGTTATGT--------TTTCAGAT-GTTTC-TCTCGCACCTGGCCTAAATTTGGCTAGAACCACAACCAATGAT
droEre2	scaffold_4512:725575-725879 -		AAGTATAAAAAACATAGTTTCGTTTTTTTATCATGAATATATAATAAACGGATTGCCGAATCTAGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTTT-TGTCAA--AAATA-----------------------------TGCGTAGGTTTCACTAGAATCGGACGTGCTGGACACAGACTTTTGAAAGAATCTGCT---TCCCCTTACTGTAAGAGTAACTCTACCGTAT---CCATTAAG-TATATCACTAGGCATGCGGCTTATTTCATTTTCCTTCCTTATCTCA-TTAA-GGTGTTTTTTTTTTTTTTTTGCAGAT-GTTTC-TTTTGCATCTGGCCTTAATTTGGCTAGAGCCACAACCAATGAT
droYak3	4:606447-606695 +		ATC-------------------------------------------ATCGGCTTGCCGAATCTAGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTTT-CGTTAA--A-ATAAAC---------------GTATGC-----TGCGTAGCTGTC-CTAGAATCGGACGTG---------GAGTTTTTAACGAATCTGTTATACTCCCTTATTGTAAGAGTAACTCTACCGTAT---CTATTAAGATT---CATT--TCAT-CGATTCATTTTCTTTTCCTTCCTTATCTTA-TTAC-GGTGTTTT-T--------TTGCAGAT-GTTTC-TTTTGCATCTGGCCTTAATTTGGCTAGAGCCACAACCAATGAC
droEug1	scf7180000409635:38978-39071 +		GGGTATAATAAAATT---------------------------------ACATTGATAGAAATTAATTATCC----------------------------------------------------------------------AAC---------------------------------------------------------------------------------------------------------------------------TGATATGGGGTTAATAGACAGTGAAACAG------------------------------TGTACTCCACTG--------------------CAA-------ATGT---CAT----------------------------------------------------------------------------------------------------------------------TA
droBia1	scf7180000302291:2723618-2723718 -		ACT---------------------------GCAAGGGTATACAAACTTCGGCTTGCCGAAGGTAACTTCCTTTCTTGTTTGTTGTA----------TCT---------------------------------------------------------------------------------------------------------------------------------T----A-A-----TCCACACG----------AACGGCGTTCTTTAAGTG---------------------------------------------------------------------------------CAA-------ATA---------------------------------------------------------------------------------------------------------------------------CAGT
droTak1	scf7180000414784:10183-10392 -		TTTTA----------------------TCTACAAGGGTATATAAGCTTCGGCTGGTCGAAGGTAGCTTCCTTTCTTGTTTTATTTTGAGGTGTTTGTTCTTTCTCTGGACTATTAACCTCATTATTAGC-----CAA--------------------------------------------------------------------------------------------------A-----TCCTCACG----------TGCA-------TTCAAGT---------------------------------------------------------------------------------CAA-------TGA----------------CATTTGGTTT---TTCTGTCCTTGTTTTGGTTAACCGTATAT-GT-ATAA-G-CGTCAGCT-GTTTT-GTTCACATCTCCCCT----------------------------
droEle1	scf7180000487392:13184-13350 -		CTG----------------------------CAAGGGTAAATAAACTTCGGCTTGACGAAGTTTGGTTCCTTTCTTGTATTAACTT----------CTATATTTCT-----------------------AGCCT---ATCAAAATGTATGGGGACTTAATATGAAGTTACCTAGGCTTTACGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCCTCTGCCTTTA-GTGAACATATTTTAA------TTTTTTTGAA-GTTTC-T------------------------------------------
droRho1	scf7180000775712:21677-21780 +		ATATGAATT--------------------------------------TTT----GCAGATT-----------TTTTGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACTTATGAC---TTTTTTCA------------------------------TATTTCAGAG-GTTAC-TTTCGAGACTGGATTTAACTTGGCAAGAATCGAACCAAATGAT
droFic1	scf7180000449965:23312-23396 -		TTATTCAATAAATTA----------TGACTGCAAGGGTATATAAGCTTCGGCATGCCGAAGCTAGCTTCATTTATTGTTGCTACTG----------ACA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC
droKik1	scf7180000297734:9432-9516 +		TATCAAAACCAA---------------TCTGCAAGGGTATACAAACTTCTGCGTGCCGAAGTTAGCTTCCTTTCT------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAC--AGATAA-----------------TCGTGC-----TCCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG
droAna3	scaffold_12947:257855-257948 +		ATTTACATTTAT-------------------AAC-------------------TATTATTTTTTC---------------------------------------------------------------------------------------------------------------------------------A---------------------TTTGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGC--------TTATAGAT-ATTAA-CTTTGAAGTTGGATTAGACTTTGCTAAAACCGCAGCCAGCGAC
droBip1	scf7180000391528:9702-9810 -		CATATAAAAT---ATTTGTTCATGTTATTATAAT-------------------TAATAAATTTAT---------------------------------------------------------------------------------------------------------------------------------T---------------------TTTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG--------TTCTAGAT-AATAA-TTTTGAAGCTGGATTAGACTTGGCTAGAACCGCAACTAACGAA
dp5	3:491746-491837 +		GTTTTTACCT-------------------GGTGAGAAGATATATTATTTCGCTTGCTAATTTTTGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCATTTACA----------------TTGGCAATCTTGTGT-----CGTGTG-------------------------------------------------------------------------------------CGT-----------------------------------------------------------------------------------------------------------------------------------GTGTGT
droPer2	scaffold_84:188800-188946 +		AGATGCAATTTT----------------------------------------------------------------AGAATAGCTT----------TTCTAAATAT-----------------------GAAAT---ACCGAAA-------------------ACTTTGGGTGGCTGCAAATAA----------A---------------------TGTATTTTACGACGAAAAAATAA-----------------TGGTGCGATTTTTTGTCGACTCCGCTATAGTAGGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCGAGCAGC--CGAGAGGC
droWil2	scf2_1100000004752:910-1038 +		ACTACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCATTGTA-----------CGCA---CTTTGCGCATATGGTTCATAAT---TTCTTTCTTATTTTTA-TTGG-GTAGTTGGAT--------TTTTAGAT-T-------------TCG---AATATTTGGTTAAAAATATAGTTACTAAC
droVir3	scaffold_10185:2817-2927 -		GGGTTCAGGG-------------------TATAAAAAAATA--------TTTTTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATATTTTAATCTTGTAGAGTTTTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGTA
droMoj3	scaffold_6456:382-498 +		ATATATAAGAAGTAC-----TCATTTAATAAAATATAAATATACTAGCTGGCCCGGCAAACGTTGCATTGCCCTCTATATTATTTCTAGATAAA------------------------------------------------------------------------------------------------------------------------------------------AAAT------TGTTGAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT
droGri2	scaffold_15110:9154576-9154669 +		GGTAAATAAAAA-AT------------------------TGTTAGCTGTGGCATAC----T-----------TTCGGGTG-----------------------------------------------------------------------------------AAATTTGTTAGTTTCAATTTG----------T---------------------TTTGTTTTGTCTTTAAAAATTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATG----------------------------------AACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGGTATAAAAAACAA-----CGTTTTTACTTCAAGTGAATATAATCTTCGGCCTGCCGAATCTTGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTATGTTGA--A-ATAAAC---------------TTGTGCTGCGCTGCGTAGGTGTCACTATAGTTGGGCGCAG------------------------------GCCGCCTCACCGTG---------------------------AGGCT---CACTAGGCATACGATTTATTTT---TTCCTTCCTTATTTTA-TTGA-GGTGTTTTAT--------TTTCAGAT-GTTTC-TTTCGCATCTGGCCTAAATTTGGCTAGAACCGCAACCAATGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....TAAAAAACAA-----CGTTTTTACTTCAAGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	3.00	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GTGTCACTATAGTTGGGCGCAG------------------------------............................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAAAC---------------TTGTGCTGCGCTGCGTAGGTG.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGGCTAGAACCGCAACCAATG..	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TCACTATAGTTGGGCGCAG------------------------------GCCGC.......................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................TTACTTCAAGTGAATATAATCTTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTTTATGTTGA--A-ATAAAC---------------TTGTGCTGCGC.......................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GCCGAATCTTGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTT...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCTAGAACCGCAACC......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGTAGGTGTCACTATAGTTGGGCG.............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAAAC---------------TTGTGCTGCGCTGCGTAGGT..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTAT--------TTTCAGAT-GTTTC-TTTCGCA....................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

GGGTATAAAAAACAA-----CGTTTTTACTTCAAGTGAATATAATCTTCGGCCTGCCGAATCTT-----------TGCTT------------------------------------------------------------------------------------------------------------------------------------------TGTTTTATGTTGA--A-ATAAAC---------------TTGTGC-----TGCCTAGGTGTCACTATAGTTGGGCGCAG------------------------------GCCGCCTTAC-------------------------CCGTG-AGGCT---CACTAGGCATACGATTTATTTT--TTTCTTCCCTTATTTTA-TTAAGGGTGTTTTAT------T-TTTCAGATGGTTTCTTTCCGCATCTGGGCCTAATTTGG--------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GGGTATAAAAAAGAA-----CGTTTTTACTGCAAGGGAATATAATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-T------------------------------------------------------CTTTAGTTAGGCGCCGTCGATATAGGCATATTATCGTATCTGCTGTACCGCCTTATTGTA---------------------------AGGCT---AACTAGGCATACGAATTATTTT---TTCATACTTAACCTTA-TTAA-GGTGTTATGT--------TTTCAGAT-GTTTC-TCTCGCACCTGGCCTAAATTTGGCTAGAACCACAACCAATGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................TTTAGTTAGGCGCCGTCGATATAGGCA..............................................................................................................................................................................................	27	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GTCGATATAGGCATATTATCGTATCTGC...............................................................................................................................................................................	28	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTTTACTGCAAGGGAATATAATTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTACTGCAAGGGAATATAATTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TACTGCAAGGGAATATAATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-GTTTC-TCTCGCACCTGGCCTAA..........................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTACTGCAAGGGAATATAATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TT---TTCATACTTAACCTTA-TTAA-GGTGT.......................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................GGCATATTATCGTATCTGCTGTACCGC.......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GGCATACGAATTATTTT---TT................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-GGTGTTATGT--------TTTCAGAT-GT...............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAAAGAA-----CGTTTTTACTGCAAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTTAGTTAGGCGCCGTCGATATAGGC...............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................T---AACTAGGCATACGAATTATTTT---T.................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TACTGCAAGGGAATATAATTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAGTATAAAAAACATAGTTTCGTTTTTTTATCATGAATATATAATAAACGGATTGCCGAATCTAGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTTT-TGTCAA--AAATA-----------------------------TGCGTAGGTTTCACTAGAATCGGACGTGCTGGACACAGACTTTTGAAAGAATCTGCT---TCCCCTTACTGTAAGAGTAACTCTACCGTAT---CCATTAAG-TATATCACTAGGCATGCGGCTTATTTCATTTTCCTTCCTTATCTCA-TTAA-GGTGTTTTTTTTTTTTTTTTGCAGAT-GTTTC-TTTTGCATCTGGCCTTAATTTGGCTAGAGCCACAACCAATGAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................TAGAATCGGACGTGCTGGACACAGAC...............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

ATC-------------------------------------------ATCGGCTTGCCGAATCTAGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTTTT-CGTTAA--A-ATAAAC---------------GTATGC-----TGCGTAGCTGTC-CTAGAATCGGACGTG---------GAGTTTTTAACGAATCTGTTATACTCCCTTATTGTAAGAGTAACTCTACCGTAT---CTATTAAGATT---CATT--TCAT-CGATTCATTTTCTTTTCCTTCCTTATCTTA-TTAC-GGTGTTTT-T--------TTGCAGAT-GTTTC-TTTTGCATCTGGCCTTAATTTGGCTAGAGCCACAACCAATGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-GTTTC-TTTTGCATCTGGC..............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

GGGTATAATAAAATT---------------------------------ACATTGATAGAAATTAATTATCC----------------------------------------------------------------------AAC---------------------------------------------------------------------------------------------------------------------------TGATATGGGGTTAATAGACAGTGAAACAG------------------------------TGTACTCCACTG--------------------CAA-------ATGT---CAT----------------------------------------------------------------------------------------------------------------------TA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACT---------------------------GCAAGGGTATACAAACTTCGGCTTGCCGAAGGTAACTTCCTTTCTTGTTTGTTGTA----------TCT---------------------------------------------------------------------------------------------------------------------------------T----A-A-----TCCACACG----------AACGGCGTTCTTTAAGTG---------------------------------------------------------------------------------CAA-------ATA---------------------------------------------------------------------------------------------------------------------------CAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTTA----------------------TCTACAAGGGTATATAAGCTTCGGCTGGTCGAAGGTAGCTTCCTTTCTTGTTTTATTTTGAGGTGTTTGTTCTTTCTCTGGACTATTAACCTCATTATTAGC-----CAA--------------------------------------------------------------------------------------------------A-----TCCTCACG----------TGCA-------TTCAAGT---------------------------------------------------------------------------------CAA-------TGA----------------CATTTGGTTT---TTCTGTCCTTGTTTTGGTTAACCGTATAT-GT-ATAA-G-CGTCAGCT-GTTTT-GTTCACATCTCCCCT----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTG----------------------------CAAGGGTAAATAAACTTCGGCTTGACGAAGTTTGGTTCCTTTCTTGTATTAACTT----------CTATATTTCT-----------------------AGCCT---ATCAAAATGTATGGGGACTTAATATGAAGTTACCTAGGCTTTACGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCCTCTGCCTTTA-GTGAACATATTTTAA------TTTTTTTGAA-GTTTC-T------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATATGAATT--------------------------------------TTT----GCAGATT-----------TTTTGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACTTATGAC---TTTTTTCA------------------------------TATTTCAGAG-GTTAC-TTTCGAGACTGGATTTAACTTGGCAAGAATCGAACCAAATGAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTATTCAATAAATTA----------TGACTGCAAGGGTATATAAGCTTCGGCATGCCGAAGCTAGCTTCATTTATTGTTGCTACTG----------ACA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATCAAAACCAA---------------TCTGCAAGGGTATACAAACTTCTGCGTGCCGAAGTTAGCTTCCTTTCT------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAC--AGATAA-----------------TCGTGC-----TCCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATTTACATTTAT-------------------AAC-------------------TATTATTTTTTC---------------------------------------------------------------------------------------------------------------------------------A---------------------TTTGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGC--------TTATAGAT-ATTAA-CTTTGAAGTTGGATTAGACTTTGCTAAAACCGCAGCCAGCGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCTAAAACCGCAGCCAGC...	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAAGTTGGATTAGACTT......................	21	1	1.00	1	1	0	0	0	0	0

droBip1

CATATAAAAT---ATTTGTTCATGTTATTATAAT-------------------TAATAAATTTAT---------------------------------------------------------------------------------------------------------------------------------T---------------------TTTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG--------TTCTAGAT-AATAA-TTTTGAAGCTGGATTAGACTTGGCTAGAACCGCAACTAACGAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTTTTTACCT-------------------GGTGAGAAGATATATTATTTCGCTTGCTAATTTTTGCTTT------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCATTTACA----------------TTGGCAATCTTGTGT-----CGTGTG-------------------------------------------------------------------------------------CGT-----------------------------------------------------------------------------------------------------------------------------------GTGTGT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AGATGCAATTTT----------------------------------------------------------------AGAATAGCTT----------TTCTAAATAT-----------------------GAAAT---ACCGAAA-------------------ACTTTGGGTGGCTGCAAATAA----------A---------------------TGTATTTTACGACGAAAAAATAA-----------------TGGTGCGATTTTTTGTCGACTCCGCTATAGTAGGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCGAGCAGC--CGAGAGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................TCCGCTATAGTAGGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCGAGC.............	27	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................CCGAAA-------------------ACTTTGGGTGGCTG.................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droWil2

ACTACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCATTGTA-----------CGCA---CTTTGCGCATATGGTTCATAAT---TTCTTTCTTATTTTTA-TTGG-GTAGTTGGAT--------TTTTAGAT-T-------------TCG---AATATTTGGTTAAAAATATAGTTACTAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..TACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCATTG...............................................................................................................................................	28	2	6.50	13	0	12	0	1	0
..TACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCAT.................................................................................................................................................	26	2	4.50	9	0	7	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAT--------TTTTAGAT-T-------------TCG---AATATTTGGT...................	27	2	4.50	9	0	0	1	8	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-GTAGTTGGAT--------TTTTAGAT-T-------------TCG---AA...........................	27	2	3.50	7	0	4	0	3	0
..TACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCA..................................................................................................................................................	25	2	3.50	7	0	5	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTA-TTGG-GTAGTTGGAT--------TTT.......................................................	25	2	1.50	3	0	0	0	3	0
.......................................................................................................................................................................................................................................................................................................................................................GGAACATCATTGTA-----------CGCA---CTTTGCGCA..................................................................................................................	27	2	1.50	3	0	2	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................CATCATTGTA-----------CGCA---CTTTGCGCATA................................................................................................................	25	2	1.50	3	0	3	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAT--------TTTTAGAT-T-------------TCG---AATATTTGGT...................	26	2	1.00	2	0	1	0	1	0
..TACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATC...................................................................................................................................................	24	2	1.00	2	0	1	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTTTTA-TTGG-GTAGTTGGAT--------T.........................................................	26	2	1.00	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................AACATCATTGTA-----------CGCA---CTTTGCGCATA................................................................................................................	27	2	1.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................GAACATCATTGTA-----------CGCA---CTTTGCGCATA................................................................................................................	28	2	1.00	2	0	1	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTA-TTGG-GTAGTTGGAT--------TTTTAGAT-.................................................	25	2	1.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................TTTGCGCATATGGTTCATAAT---TTCT..............................................................................................	25	2	1.00	2	0	0	0	2	0
........................................................CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCATTGTA-----------CGCA---CTTTGCGCA..................................................................................................................	29	2	1.00	2	0	1	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TA-TTGG-GTAGTTGGAT--------TTTTAGAT-T-------------...................................	25	2	1.00	2	0	1	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TGTA-----------CGCA---CTTTGCGCATATGGTTCA.........................................................................................................	26	2	0.50	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGAT-T-------------TCG---AATATTTGGTTAAAAA.............	28	2	0.50	1	0	0	0	1	0
................................................TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCATTGTA-----------CG................................................................................................................................	26	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TAAT---TTCTTTCTTATTTTTA-TTGG-GT..........................................................................	26	2	0.50	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................GCGCATATGGTTCATAAT---TTCTTTCT..........................................................................................	26	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATTTTTA-TTGG-GTAGTTGGAT--------T.........................................................	27	2	0.50	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................T---TTCTTTCTTATTTTTA-TTGG-GTAG........................................................................	25	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTTTTA-TTGG-GTAGTTGGAT--------..........................................................	25	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATTTTTA-TTGG-GTAGTTGGAT--------..........................................................	26	2	0.50	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TA-TTGG-GTAGTTGGAT--------TTTTAGAT-.................................................	24	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAT--------TTTTAGAT-T-------------TCG---AATATTTGGTTA.................	29	2	0.50	1	0	1	0	0	0
..TACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACA.....................................................................................................................................................	22	2	0.50	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTA-TTGG-GTAGTTGGAT--------TTTTAGA...................................................	27	2	0.50	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTTTTA-TTGG-GTAGTTGGAT--------TT........................................................	27	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-T-------------TCG---AATATTTGGTTAAAAATA...........	27	2	0.50	1	0	1	0	0	0
.....................................................CGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCATTGTA-----------CGCA---CTT........................................................................................................................	26	2	0.50	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGAT-T-------------TCG---AATATTTGGT...................	22	2	0.50	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TGTA-----------CGCA---CTTTGCGCATATGGTTC..........................................................................................................	25	2	0.50	1	0	1	0	0	0
..TACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACAT....................................................................................................................................................	23	2	0.50	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAT--------TTTTAGAT-T-------------TCG---AATATTTGG....................	27	2	0.50	1	0	0	0	1	0
...ACACT----------------------------------------TGGCGCGGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACATCAT.................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTGCGCATATGGTTCATAAT---TTCTTTCT..........................................................................................	28	2	0.50	1	0	1	0	0	0

droVir3

GGGTTCAGGG-------------------TATAAAAAAATA--------TTTTTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATATTTTAATCTTGTAGAGTTTTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTGTAGAG......................................................................................................................................................................................................................................................................................................	28	20	18.55	371	0	0	0	0	5	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	22	68	66	14	12	10	21	0	0	34	43	22	13	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACATAGTACTGCGTA	19	20	3.70	74	0	0	5	0	12	0	3	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	25	3	15	0	0	0	0	0	4	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTGTAGA.......................................................................................................................................................................................................................................................................................................	27	20	2.80	56	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	21	0	4	2	0	4	0	0	10	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTGTAGAGT.....................................................................................................................................................................................................................................................................................................	29	20	2.00	40	0	0	2	0	0	0	5	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	4	0	6	0	1	0	1	4	0	2	0	0	2	0	2	1	2	3	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTGTAG........................................................................................................................................................................................................................................................................................................	26	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	1	0	1	2	2	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACATAGTACTGCGT.	18	20	0.40	8	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TGTAGAGTTTTAGAATAGATATA----------A--T-A......................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCTTGTAGAGTTTTAGAATAGATA........................................................................................................................................................................................................................................................................................	24	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CTA--------------------------------------TGAATATATTTTAATCTTGTAGAG......................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGAATATATTTTAATCTTGTAGAGTTT...................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTGTA.........................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TAGAGTTTTAGAATAGATATA----------A--T-A......................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................TTTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTGTAGAGTTTTAGAATAGATATA----------A--.........................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TAATCTTGTAGAGTTTTAGAATAGAT.........................................................................................................................................................................................................................................................................................	26	19	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAATCTTGTAGAGTTTTAGAATAGA..........................................................................................................................................................................................................................................................................................	26	19	0.11	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TTTAATCTTGTAGAGTTTTAGAATAGA..........................................................................................................................................................................................................................................................................................	27	19	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGAATATATTTTAATCTTGTAGAG......................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATATATTTTAATCTTGTAGAGT.....................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AATCTTGTAGAGTTTTAGAATAGATA........................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATAT.......................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTGTAGAGTTTTAGAATAGATATA----------A--T-.......................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGAATATATTTTAATCTTGTAGAGTT....................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TA--------------------------------------TGAATATATTTTAATCTTGTAGAGT.....................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGAATATATTTTAATCTTGTAGAGT.....................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGTA	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTT............................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTTTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTTTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT..................	25	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGTA	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGT.	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAATCTTGTAGAGTTTTAGAATAGATA........................................................................................................................................................................................................................................................................................	28	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TAATCTTGTAGAGTTTTAGAATAGATA........................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTAATCTTGTAGAGTTTTAGAATAGAT.........................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TA--------------------------------------TGAATATATTTTAATCTTGTAGAG......................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CTA--------------------------------------TGAATATATTTTAATCTTGTAGA.......................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGT........	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTA.......	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................AA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATATTT...................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................T----------C-------------------------------------GATATCTA--------------------------------------TGAATATATTTTAATC..............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCG..	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATAT.....................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GAGTTTTAGAATAGATATA----------A--T-AT.....................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTGTAGAGTT....................................................................................................................................................................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATC..............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAACATAGTACTGCGT.	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCTTG...........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGT.	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GAATATATTTTAATCTTGTAGAG......................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATA......................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................AA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATA........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGT........	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................A--------------------------------------TGAATATATTTTAATCTTGTAGAGT.....................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TGTAGAGTTTTAGAATAGATATA----------............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC..................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................A----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCG..	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GTAGAGTTTTAGAATAGATATA----------A--T-AT.....................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCGT.	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTA--------------------------------------TGAATATATTTTAATCT.............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCG..	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATTTTAATCTTGTAGAGT.....................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TA--------------------------------------TGAATATATTTTAATCTTGTAGAGTT....................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TG............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATCTA--------------------------------------TGAATATATTTTAATCTTGTA.........................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATCTTGTAGAGTTTTAGAATAGATA........................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATTTTAATCTTGTAGAGTTTTAGAA..............................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACT.....	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATATATTTTAATCTTGTAGAG......................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATATATTTTAATCTTGTAGA.......................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGCG..	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATATTT...................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTATCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATA........................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCAA------------------------TAT----------C-------------------------------------GATATCTA--------------------------------------TGAATATAT.....................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ATATATTTTAATCTTGTAGAGTTTTAGA...............................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAACATAGTACTGC...	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................A--------------------------------------TGAATATATTTTAATCTTGTAGAGTT....................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................A--------------------------------------TGAATATATTTTAATCTTGTAGAGTTT...................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................TTTAGAATAGATATA----------A--T-ATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC.................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTGTAGAGTTTTAGAATAG...........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATATATTTTAATCTTGTAGAGTTTT..................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATATATAAGAAGTAC-----TCATTTAATAAAATATAAATATACTAGCTGGCCCGGCAAACGTTGCATTGCCCTCTATATTATTTCTAGATAAA------------------------------------------------------------------------------------------------------------------------------------------AAAT------TGTTGAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................TGTTGAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.	23	20	2.85	57	46	0	0	0	0	11
...................................................................................................................................................................................................................................................GTTGAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.	22	20	0.15	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................AT------TGTTGAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..	24	20	0.10	2	1	0	0	0	0	1
..........................................................................................................................................................................................................................................AT------TGTTGAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.	25	20	0.05	1	0	0	0	0	0	1
...............................................CTGGCCCGGCAAACGTTGCATTGCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.............................................................................................A------------------------------------------------------------------------------------------------------------------------------------------AAAT------TGTTGAA-----AGCTATGT-----TGTTC..................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................GAA-----AGCTATGT-----TGTTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.	19	20	0.05	1	0	0	0	0	1	0

droGri2

GGTAAATAAAAA-AT------------------------TGTTAGCTGTGGCATAC----T-----------TTCGGGTG-----------------------------------------------------------------------------------AAATTTGTTAGTTTCAATTTG----------T---------------------TTTGTTTTGTCTTTAAAAATTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATG----------------------------------AACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_30214

4:371547-371696 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.1	-13.6	-13.5