ID:

dsi_30199

 Coordinate:

3r:206994-207143 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.9 -25.7 -25.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-

Sense Strand Reads

ATCGTCGTTGGAGCACCCGTTTCTCGTCAATTTATGGTTCTCTTTTCAGGGTAAGTCTTCACAGGCACAATTCTCGAGCATATGAACACAATCGAGTATCCAAACGAGGAAACATGTAATCCGAGGATTCCAACTTAGTTGTTGCTCGTAGAGTAAAAGGGTATACTATATTCGTTGAAAAATAAGTAAGAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATACCCTATTCTTGATAAGGATCAA
***************************************************..(((((((....(((.....(((((..............)))))..(((......)))....))).....)))))))((..((((.(((((..(((..(((((..((......)).)))))..)))..))))).)))).)).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M053
female body
 SRR902009
testis
..........................................................................................................................................................................TTCGTTGAAAAATAAGTAAGAGGC........................................................ 24 0 1 72.00 72 26 30 4 9 0 2 1 0 0
..........................................................................................................................................................................TTCGTTGAAAAATAAGTAAGAGGCAGA..................................................... 27 0 1 23.00 23 3 4 7 8 0 0 0 1 0
..........................................................................................................................................................................TTCGTTGAAAAATAAGTAAGAGGCA....................................................... 25 0 1 14.00 14 5 5 3 1 0 0 0 0 0
......GTTAGAGCACCCGTT..................................................................................................................................................................................................................................... 15 1 1 8.00 8 6 0 2 0 0 0 0 0 0
......GTTAGAGCACCCGTTT.................................................................................................................................................................................................................................... 16 1 1 6.00 6 3 0 3 0 0 0 0 0 0
..........................................................................................................................................................................TTCGTCGAAAAATAAGTAAGAGGCA....................................................... 25 1 1 4.00 4 0 0 0 0 4 0 0 0 0
..........................................................................................................................................................................TTCGTTGAAAAATAAGTAAGAGGCAG...................................................... 26 0 1 4.00 4 1 0 2 0 0 1 0 0 0
..........................................................................................................................................................................TTCGTCGAAAAATAAGTAAGAGGCAGA..................................................... 27 1 1 3.00 3 0 0 0 0 3 0 0 0 0
...........................................................................................................................................................................................................................AAGTATATACCCTATTCTTGATAAGGA.... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AAGTATATACCCTATTCTTGATAAGG..... 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0
...........................................................................................................................................................................TCGTTGAAAAATAAGTAAGAGGCAGA..................................................... 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................TTCGTTGAAAAATAAGTAAGAGG......................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................TTCGTCGAAAAATAAGTAAGAGGC........................................................ 24 1 1 2.00 2 0 1 0 0 1 0 0 0 0
......................................................................................................................................................................................TAAGTAAGAGGCAGAAGGAAGCGTT........................................... 25 0 1 2.00 2 0 0 0 0 1 1 0 0 0
..........................................................................................................................................................................TTGGTTGAAAAATAAGTAAGAGGC........................................................ 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......GTTAGAGCACCCGTTTG................................................................................................................................................................................................................................... 17 2 7 1.71 12 4 0 7 1 0 0 0 0 0
.......TTAGAGCACCCGTTT.................................................................................................................................................................................................................................... 15 1 3 1.00 3 2 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TAAGAGGCAGAAGGAAGCGTTTCCGACCA................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................TCAGGGTAAGTCTTCACAGGCACAATT.................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................TAAAGTATATACCCTATTCTTGATAAGGA.... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................TAAGTCTTCACAGGCACAAT................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................ATACTATATTCGTTGAAAAATAAGTA.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTCGTCGAAAAATAAGTAAGAGG......................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................AAAGTATATACCCTATTCTTGATAAGGA.... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................TCGTAGAGTAAAAGGGTATACTATA................................................................................ 25 0 4 1.00 4 0 0 0 0 0 4 0 0 0
..........................................................................................................................................................................TTCGTTGAAAAATAAGGAAGAGGC........................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TTCGTCGAAAAATAAGTAAGAGGAAGA..................................................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................ATCGAGTATCCAAACGAGGAAACATG...................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................TCGTCGAAAAATAAGTAAGAGGCA....................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................AAGTATATACCCTGTTCTTGATAAGGA.... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................TTCGTCGAAAAATAAGTAAGAGGCAG...................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0
....TGGTTAGAGCACCCGTTT.................................................................................................................................................................................................................................... 18 2 5 0.60 3 2 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TTCGTTGAAAAATAA................................................................. 15 0 2 0.50 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................TAGAGTAAAAGGGTATACTATATTC............................................................................. 25 0 4 0.50 2 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................TTCGTTGAAAAATAAG................................................................ 16 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....GGTTAGAGCACCCGTTT.................................................................................................................................................................................................................................... 17 2 9 0.44 4 2 0 2 0 0 0 0 0 0
.....GGTTAGAGCACCCGTT..................................................................................................................................................................................................................................... 16 2 20 0.35 7 4 0 3 0 0 0 0 0 0
....................................................................................................................................................TAGAGTAAAAGGGTATACTATATT.............................................................................. 24 0 4 0.25 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................TCGTAGAGTAAAAGGGTATACTAT................................................................................. 24 0 4 0.25 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................GAGGCAGAAGGAAGCGTTTC......................................... 20 0 4 0.25 1 0 0 0 0 0 1 0 0 0
................................................GGGTAGGTCTTCACA........................................................................................................................................................................................... 15 1 4 0.25 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TAGAGTAAAAGGGTATACTATAT............................................................................... 23 0 4 0.25 1 0 0 0 0 0 1 0 0 0
....TGGTTAGAGCACCCGTT..................................................................................................................................................................................................................................... 17 2 9 0.22 2 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................TAAAAGGGTATACTATATTCGTTGAA....................................................................... 26 0 5 0.20 1 0 1 0 0 0 0 0 0 0
.................................................GGTCAGTCTTCACAGTCA....................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................TAGAGTAAAAGGGTATAC.................................................................................... 18 0 20 0.20 4 0 0 0 0 0 4 0 0 0
..............................................................................................................................................TGCTCGTAGAGTAAAAGGGTAAACTA.................................................................................. 26 1 5 0.20 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................CGAGGCAGAAGGAAGCGTTTCCGACC.................................... 26 1 6 0.17 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................GAGGCAGAAGGAAGCGTT........................................... 18 0 6 0.17 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TAAGAGGCAGAAGGAA................................................ 16 0 7 0.14 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................TCGTAGAGTAAAAGGGTATCCTCT................................................................................. 24 2 7 0.14 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................GGGTATACTATATTCGTTGAAAA..................................................................... 23 0 7 0.14 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................TCGTAGAGTAAAAGGGTAAACTAT................................................................................. 24 1 9 0.11 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................TCGTAGAGTAAAAGGGTATTCTATA................................................................................ 25 1 12 0.08 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................TCGTAGAGTAAAAGGATATACTATA................................................................................ 25 1 15 0.07 1 0 0 0 0 1 0 0 0 0
.............CACTCGTTTCTCGTC.............................................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................TTGTAGAGTAAAAGGGTATACTATA................................................................................ 25 1 15 0.07 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................TCGTAGAGTGAAAGGGTATACTATT................................................................................ 25 2 16 0.06 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................CCGTAGAGTAAAAGGGTATACTCTT................................................................................ 25 3 18 0.06 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AGAGGCAAAAGGAAGCGTT........................................... 19 1 18 0.06 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................AAGAGGTAGAAGGAAGCGTTT.......................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................AGAGTAAAAGGGTATACT................................................................................... 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................AGGCAGAAGGAAGCGTTTCCGACC.................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGTATATA...................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................TTGTAGAGTAAAAGGGTATACTATT................................................................................ 25 2 20 0.05 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................GAGTAAAAGGGTATACTA.................................................................................. 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................TAAAAGGGTATACTATACTAGTTGAAA...................................................................... 27 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAGCAGCAACCTCGTGGGCAAAGAGCAGTTAAATACCAAGAGAAAAGTCCCATTCAGAAGTGTCCGTGTTAAGAGCTCGTATACTTGTGTTAGCTCATAGGTTTGCTCCTTTGTACATTAGGCTCCTAAGGTTGAATCAACAACGAGCATCTCATTTTCCCATATGATATAAGCAACTTTTTATTCATTCTCCGTCTTCCTTCGCAAAGGCTGGTATATTTCATATATGGGATAAGAACTATTCCTAGTT
********************************************************..(((((((....(((.....(((((..............)))))..(((......)))....))).....)))))))((..((((.(((((..(((..(((((..((......)).)))))..)))..))))).)))).)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 M023
head
 M024
male body		 GSM343915
embryo
.....................................................TCAGAAGTGTCCGTGTTAAGAGCTCGT.......................................................................................................................................................................... 27 0 1 13.00 13 2 3 6 2 0 0 0 0 0 0 0 0
......................................................................................................TTGCTCCTTTGTACATTAGGCTCCT........................................................................................................................... 25 0 1 13.00 13 9 2 1 0 1 0 0 0 0 0 0 0
..................................................................................................AGGTTTGCTCCTTTGTACATTAGGCT.............................................................................................................................. 26 0 1 11.00 11 1 6 1 0 1 2 0 0 0 0 0 0
......................................AGAGAAAAGTCCCATTCAGAAGTGT........................................................................................................................................................................................... 25 0 1 10.00 10 6 2 2 0 0 0 0 0 0 0 0 0
..................................ACCAAGAGAAAAGTCCCATTCAGAAGTGT........................................................................................................................................................................................... 29 0 1 6.00 6 4 1 0 0 1 0 0 0 0 0 0 0
......................................................CAGAAGTGTCCGTGTTAAGAGCTCGT.......................................................................................................................................................................... 26 0 1 4.00 4 1 0 0 1 2 0 0 0 0 0 0 0
....................................................................................TTGTGTTAGCTCATAGGTTTGCTCCTT........................................................................................................................................... 27 0 1 4.00 4 2 0 1 0 1 0 0 0 0 0 0 0
....................................................................................TTGTGTTAGCTCATAGGTTTGCTCCT............................................................................................................................................ 26 0 1 4.00 4 2 0 1 0 1 0 0 0 0 0 0 0
................................................................CGTGTTAAGAGCTCGTATACTTGTGT................................................................................................................................................................ 26 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0
................................................CCCATTCAGAAGTGTCCGTGTTAAGAGC.............................................................................................................................................................................. 28 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCTGGTATATTTCATATATGGGAT................. 26 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0
......................................................................................................................TAGGCTCCTAAGGTTGAATCAACAA........................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................CATAGGTTTGCTCCTTTGTACATTAGGCT.............................................................................................................................. 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
....................................................TTCAGAAGTGTCCGTGTTAAGAGCT............................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................AGGTTGAATCAACAACGAGCATCTCAT............................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
......................................AGAGAAAAGTCCCATTCAGAAGTGTCCGTGT..................................................................................................................................................................................... 31 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................TCAGAAGTGTCCGTGTTAAGAGCTC............................................................................................................................................................................ 25 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................CTAAGGTTGAATCAACAACGAGCATCT.................................................................................................. 27 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................TCAGAAGTGTCCGTGTTAAGAGCTCGTAT........................................................................................................................................................................ 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATATA....................... 25 0 20 1.90 38 34 0 0 1 1 0 1 1 0 0 0 0
...........................................................................................................................TCCTAAGGTTGAATCAACAACGAGCATCT.................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................CAAGAGAAAAGTCCCATTCAGAAGTGT........................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGGCTCCTAAGGTTGAATCAACAA........................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................CCGTGTTAAGAGCTCGTATACCTGTGT................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................AGAAAAGTCCCATTCAGAAGTGTCCGT....................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGTTTGCTCCTTTGTACATTAGGCTC............................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................AGTCCCATTCAGAAGTGT........................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................TCAGAAGTGTCCGTGTTAAGAGCT............................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................AAGTCCCATTCAGAAGTGTCCGTGT..................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GAAAAGTCCCATTCAGAAGTGTCCGTGT..................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................AGAGAAAAGTCCCATTCAGAAGTGTCCGT....................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................CCGTGTTAAGAGCTCGTATACTTGTGT................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................GTTGAATCAACAACGAGCTT.................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................TCATAGGTTTGCTCCTTTGTACATT................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CTTGTGTTAGCTCATAGGTTTGCTCCT............................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................AAGTCCCATTCAGAAGTGTCCGTGTT.................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................AGTCCCATTCAGAAGTGTCCGTGTTA................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................CGTGTTAAGAGCTCGTATACT..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................CAGAAGTGTCCGTGTTAAGAGCTCGTAT........................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTGTTAGCTCATAGGTTTGCTCCTTTG......................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATTCATTCTCCGTCTTCCT................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................AAAGAGCAGTTAAATACCAAGAGAAA............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCCTAAGGTTGAATCAACAACGAGCAT.................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGTACATTAGGCTCCTAAGGTTGAAT................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................GTGTTAGCTCATAGGTTTGCTCCTTT.......................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................AAAAAAGGCTCCTAAGGTTGAAT................................................................................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................GTGTCCGTGTTAAGAGCTCGTATAC...................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TCAGAAGTGTCCGTGTTAAGAGCTGGT.......................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAGGTTGAATCAACAACGAGCATCTCATT.............................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................CCCATTCAGAAGTGTCCGTGTTAAGAGCT............................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTTTATTCATTCTCCGTCTTCCTT................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................ATACCAAGAGAAAAGTCCCATTCAGAAG.............................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................AAAGTCCCATTCAGAAGTGTCCGTGT..................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AAAAGTCCCATTCAGAAGTGTCCGTGT..................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCAGACGTGTCCGTGTTAAGAGCTCGT.......................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AGCAACTTTTTATTCATTCTCCGTCTT.................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................AGAGAAAAGTCCCATTCAGAAGTGTCCG........................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................AGTGTCCGTGTTAAGAGCTCGTATACT..................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................TTGCTCCTTTGTACATTAGGCTCCTA.......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAGCAACTTTTTATTCATTCTCCGT....................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................CGTGTTAAGAGCTCGTATACTTGTGTT............................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AGGCTCCTAAGGTTGAATCAACAACGAGC...................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................ATACTTGTGTTAGCTCATAGGTTTGCTCCT............................................................................................................................................ 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................CCGTGTTAAGAGCTCGTATACTTGT.................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AAAGGTTGAATCAACAACGAGCA..................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AGGCTCCTAAGGTTGAATCAACAT........................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................AAGAGCTCGTATACTTGTGTTA.............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................CTAAGGTTGAATCAACAACGAGCAT.................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................GTTAAGAGCTCGTATACTTGTGTT............................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGGTATATTTCATATATGGGAT................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................ACTTGTGTTAGCTCATAGGTTTGCTCCT............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AAAAGTCCCATTCAGAAGTGT........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTAT................................. 22 0 20 0.95 19 0 0 0 19 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCAT.......................... 23 0 20 0.95 19 10 0 0 0 6 0 3 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATAT........................ 25 0 20 0.95 19 9 0 4 1 1 0 4 0 0 0 0 0
................................................................................................................................................................................................CGTCTTCCTTCGCAAAGGCTGGTAT................................. 25 0 20 0.75 15 0 0 0 14 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATATA....................... 24 0 20 0.75 15 6 9 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTTCGCAAAGGCTGGTAT................................. 21 0 20 0.65 13 0 0 0 13 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATATT.............................. 25 0 20 0.60 12 2 0 2 8 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCAT.......................... 24 0 20 0.55 11 4 4 0 1 2 0 0 0 0 0 0 0
...........................................................................................................................................................TTTCCAATATGATATAAGCAACTTT...................................................................... 25 1 11 0.55 6 0 0 2 0 4 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATATAT...................... 27 0 20 0.50 10 1 6 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTCGCAAAGGCTGGTATATTTCAT.......................... 25 0 20 0.50 10 6 0 4 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAAAGGCTGGTATATTTCA........................... 19 0 20 0.45 9 0 0 0 9 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATATTT............................. 26 0 20 0.35 7 0 1 2 3 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCA........................... 21 0 20 0.35 7 0 0 0 7 0 0 0 0 0 0 0 0
.........................................................................................................................GCGCCTAGGGTTGAATTAACA............................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTTCGCAAAGGCTGGTATAT............................... 23 0 20 0.30 6 0 0 0 6 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCATATA....................... 26 0 20 0.30 6 0 4 0 0 0 0 2 0 0 0 0 0
.....................AGAGGAGTTAGATACCA.................................................................................................................................................................................................................... 17 2 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCTTCGCAAAGGCTGGTATATTTCAT.......................... 26 0 20 0.25 5 0 1 3 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTTTATTTCATAT........................ 25 1 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCAT.......................... 22 0 20 0.25 5 2 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATTTTCCCATATGATATAAGCAACTTT...................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..............TGGGCAAAGTTCAGTTAAAT........................................................................................................................................................................................................................ 20 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTTCCCATATGATATAAGCAACTTT...................................................................... 26 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AAGGCTGGTATATTTCATATATG..................... 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATATAT...................... 26 0 20 0.20 4 0 1 0 0 0 0 3 0 0 0 0 0
..........................................................................................................................................................TTTTCCAATATGATATAAGCAACTTT...................................................................... 26 1 10 0.20 2 0 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTCCCATATGATATAAGCAACTTTT..................................................................... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTCCCATATGATATAAGCAACTTT...................................................................... 25 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TCCGTCTTCCTTCGCAAAGGCTGGTAT................................. 27 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0
........................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCATAT........................ 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTATATTTCATAT........................ 24 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTTTATTTCATATAT...................... 27 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGAGCATCTCATTTTCCCATATGAT.................................................................................. 27 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................TTCCAATATGATATAAGCAACTTT...................................................................... 24 1 14 0.14 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTATATTTC............................ 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTATAT............................... 17 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATATAT...................... 25 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................AGTGTTCGTGTTAAG................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTCTTCCTTCGCAAAGGCTGGTAT................................. 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTTTATTTCATATATAG.................... 28 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAGGCTGGTATATTTCAT.......................... 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTCTTCCTTCGCAAAGGCTGGTATAT............................... 26 0 20 0.10 2 0 0 0 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................TCTTCCTTCGCAAAGGCTGGTATATTT............................. 27 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................ACAACGATCATATCAGTTTC........................................................................................... 20 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAAAGGCTGGTATATTTC............................ 18 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................TTCCAATATGATATAAGCAACTTTT..................................................................... 25 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................GGTTTGCTCCTTAGTACGA.................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTTTCATTGTCCGTCTTCCTT................................................ 22 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTTTTTCAATGTCCGTCTTCCT................................................. 23 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCATATGATATAAGCAA.......................................................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTTCGCAAAGGCTGGTATATTTCAT.......................... 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATATTTCAT.......................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGGTATAT............................... 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTCGCAAAGGCTGGTTTATTTCAT.......................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTCA........................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCTGGTATATTTCATATA....................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCCTTCGCAAAGGCTGGTATATTTCAT.......................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTCGCAAAGGCTGGTATATTTCATAT........................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGGCTGGTATATTTCATATA....................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................GTATACTGCTGTAAGCTCA......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTCTTCCTTCGCAAAGGCTGGTAT................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATAT............................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................CGCAAAGGCTGGTACATTTCATATA....................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTCGCAAAGGCTGGTTTATTTCATAT........................ 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTCGCAAAGGCTGGTATAT............................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAGGCTGGTATATTTCAT.......................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AACAACGATCATATCAGTT............................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAGGCTGGTATATTTCATAT........................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCTTCGCAAAGGCTGGT................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATATCATAT........................ 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCTTCGCAAAGGCTGGTATATATCAT.......................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGCAAAGGCTGGTATATTTC............................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAGGCTGGTATATTT............................. 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCATATAT...................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCGTCTTCCTTCGCAAAGGCTGGTATAT............................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCCTTCGCAAAGGCTGGTATA................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................TTCGCAAAGGCTGGTATATTTCATATA....................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TAGTTGTGTTAGATCGTAG...................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:206944-207193 - dsi_30199 ATCGTCGTTGG--AGC-ACCCGTTTCTCGTCAATTTATGGTTCTCTTTTCAGGGTAAGTCTTCAC--------AGGCACAA--TTCTCGAGCATA-TG--AACA--CAAT-------CGAGTATCCAAACGAGGA------------------AACAT-------GTAA------------------TCC--------------------GAGGATTCC------AAC----------------------------------------T---T--------AGT---------------T-------GTTGCTCGT--AGAGTAAA------AGGGTATACTATATT---------CGTTGAAAAATAAGTAAGAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATACCCTATTCTTGATAAGGATCAA
droSec2 scaffold_6:344295-344544 - ATCGTCGTTGG--AGC-ACCCGTTTCTCGTCAATTTATGGTTCTCTTTTCAGGGTAAGTCTTCAC--------AGGCACAA--TTCTCGAGCATA-TG--AACA--CAAT-------CGAGTATCCAAACGAGGA------------------AACAT-------GTAA------------------TCC--------------------GAGGATTCC------AAC----------------------------------------T---T--------AGT---------------T-------GTTGCTCGT--AGAGTAAA------AAGGTATACTAGATT---------CGATGAAAAATAAGTAAGAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATACCCTATTCTTGATAAGGATCAA
dm3 chr3R:240049-240304 - ATCGTCGTTGG--AGC-ACCCGTTTCTCGTCAATTTGTGGTTCTCTTTTCAGGGTAAGTCTTCAC--------AGGCACAA--TTCTCGAGCATA-TG--AACA--CGAT-------CGAGTATCCATCCAA---------------------------------GC-GTTCCAAAGGAA-------TGC--------------------GAGGATTCC------AAC----------------------------------------A---T--------TGT-----TGGATGTA----------GTTACTCGT--AGAGTAAA------AGGGTATACTAGATT---------CGTTGAAAAATAAGTAACAGGCAAAAGAAAGAGTTTCCGGCTATATAAAGTATATA---TATTCTTGATCAGAATCAA
droEre2 scaffold_4845:2563188-2563420 + GCGC---------------CAGTTATTCGACAATATAAAATT------TCAGCTTTAA-A-----ATTATCAAAATCGGAC--TACTGCGCCATA-TA--GCTG--TAATAG-----GAACTGTCCTAATAATG----------------------------------A------------------TTC--------AAAATACAAGAAAAGAA---------------------------------------------------------------------------TTTTATACAC-------GTTACTTGT--AGGGTAACT-----AGATTCTACTAGATT---------CGTTGACAAGTATATAACAGGCAGAAGGAAACGG-TCCGATCATATAAAGTATATA---TATTCTTGATCAGGATCAA
droYak3 2R:1010709-1010938 - TTGC---------AGCGCCCAGTTTTTCGTACATATAT---------TTCGGCTTAACTA-----ATTTTCGATAGCAGAG--CGATAGAGCTTG-TG--GAGA--CGTT-------A----ATCCAA-----------------------------------------------------------CCT--------------------GAAAA-------------------------------CTATATA----------AGTAGT---G--------C-----CTTCTTTATACCC-------GTTACTCGT--AGGGTAAA------AGGGTATAATAGATT---------CGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCAACCATATATAGTATATA---TATTCTTGATCAGGATCAA
droEug1 scf7180000409676:145344-145570 + ATTGTTATTGACCAGC-ACCCG-------AA--------CATCTATTATTGGAATAGGTCTTGAG--------GG-CGG-T--CGTCAGTACTAG-TGTGTATA--CAGT-------CAACT-TCGAAATCAGAA----------------------------------------------------------------------------GTAATTTT------AAC-----------------------------------------------------------TCTGATTATACCT-------GTTACTCGT--AGAGTAAA------AGGGTATACTAGATT---------CGTTGAAAAGTATGTAACAGATAGAAGTAAGCTTTTGCGACTCTATAAAGTATATA---TATTCTTGATCAGGATCAA
droBia1 scf7180000301518:1327184-1327371 - CTAGTC-------------------------AATAAATCTTATTCTTTATAGTGT------------------------------------------G--ACCAAAGATT-------TCAAAGTTCACAGA-------------------------------------C-AT-------------AA---AAATAAAT-----A------GAATGTTCA------------------------------------------------------------------------AAGGAACTT-------TTTACTCGT--AGAGAAAA------AGGGTTTACTAAATT---------CGTCGGAAAGTATGTAACAGGTATAAAAAAGCGTT------CTCATAAAGTATACA---TATTCTTGATCAGGATCAC
droTak1 scf7180000414558:8281-8495 + GTTGTT---------------------TATTAATTCATGTTGCTATTTT--AGTCAAGTTTTCAT--------TAGTGAAA--TCTGCAAGGGTA-TT--AAAA--C-----------------------TTCGG------------------CT--------------------------------------------------------------------------------------------------TGCCGAAG----------TTAGCTTCCG-----TCCTAATTATACCC-------GTTACTCGT--AGAGTAAA------AGGGTATACTAGATT---------CGTGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATA---TATTCTTGATCAGGGTCAC
droEle1 scf7180000490592:2295-2520 - ATGTCCGTCTA--TCC-GTCCGATTCTACGCAAACTAGACTCTCAGTTTTAA----AGCCATCAT--------AG---CAT--TCAGCAACCATA-GA--AACA--CGCT-------GAAGAATA--AATGAAAA----------------------------------------------------------------------------AAAATTAT------AAC----------------------------------------T---T--------TGC---TGTTTTTATACCCT------------TGC--A------G------AGGGTATTATAATTT---------CAGTCAGAAGTTTGCAACGCAGTCAAGGAGACATCTCCGACCCTATAAAGTATATA---TATTCTTGATCAGCATCAG
droRho1 scf7180000771159:9124-9379 - GTCGGT--------GT-ACACGATTCTGCAAAATCTATTGCACGGTTTTCAG----ATTTTGCAC--------AG---TAT--TTCTCTACCAGA-TT------------------------------------CCTCAGGTAACCCTGTCGAGTATTTTTTTTAGA-GCA--------------AC---AAATAACT-----C------GACTTTTTGGGCGAAAA-----------------------------------------------------------TCGTGGTTATACCC-------ATTACTCGT--AGAATAAA------AGTGTATATTGTATT---------CGTGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATA---TATTCTTGATCAGGGTCAC
droFic1 scf7180000454040:695355-695535 - CAGTCT-------------------------------------------------------TCA------------------------AATATAG-CG--AACA--CAAT----------GCATAAAGGCTAAAC------------------AACAT-------CGAA------------------G----------------------------------------------------------CTATGAC----G-----ATTATT---C--------T-----ATTCATTATACCC------------TTGC--AGAGCAA-------AGGGTATTATAATTT---------TGGCCAGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATA---TATTCTTGATCAGCATCAC
droKik1 scf7180000302356:7463-7642 + CAAAAT------------------------------------------------------------------------------TCTGAACAA-A-TA--AA-A--TAAG-------CTTATATCTCAGAGTAGA------------------TAAAA-------ATAG------------------TTT--------GAAAAA--------------C------AAC----------------------------------------G---A--------AGTTATCATTTTTATACCCT------------TG----------C------AGGGTATTATAATTT---------CGGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATA---TATTCTTGATCAGCATGAA
droAna3 scaffold_13767:1260341-1260533 - TGAA------------------------------------------------------TTTTCAC--------CGGATCAT--TTCAAAATTTTG-TG--AACA--CATT-------TCAAAATATATACA-------------------------------------C-TTTAAGAAAATGCAA--AAA--------------------AAAAAATT------------------------------------------------------C--------G-----ATTTTTTATACCCT------------TGC--A------G------AGGGTATTATAATTT---------TGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATA---TATTCTTGATCAGGATCAC
droBip1 scf7180000395709:46838-47021 - AATTCT-------------------------------------------------------TCAC--------A---AAAT--TTCTTAAACTTA-TT--TACA--CAAA-------CGT---------------------------------------------CATA------------------TTCG-------------------CAAGATTAA------A--------------------CTATTAA----------AATGAT---A--------TGT---AGTTTTTATACCCT------------TGC--A------G------AGGGTATTATAATTT---------TGTCCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATA---TATTCTTGATCAGGATCAC
dp5 XR_group6:1403740-1403946 + AAGTCT-------------------------------------------------------TC----------TGGCTGAA--TTAGTAATCTGA-TT--GTCA--AGAT-------CACTTACCTACATGAGGA------------------ATGAC-------ATAA------------------CTC--------------------TTAT------------------------------------------------------A---T--------T-----GTTTTTTATAACT-------GGCACTTGA--AGAGTCTAGGGATACGATTACAATAGTTTTGTGGGGAA--TGTGGATATGTGTAACACCCAGAAGGA-CCGTTTCCGACCGTATAAAGTGTATA---TATTTTTGTTTATCATCAA
droPer2 scaffold_6:4674178-4674403 + CTCATT--TCG--GGC-AC-------------GTGTACGCTGCTGACTTCATGGAAAATTTTCAC--------AAGGGCAAAGTCCGCGATGAAA-TG---------------------------------C---------------------------------------------------------C--------------------GAGAT---------------------------------------CTCCACACGAGTGCT---T--------AGT---TTTTTTTATACCC-------GATACTCAAAATGAGTATT------GGGGTATATTAGATTTGTGGTAAA--AGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATA---TATTCTTGATCAGCATCAA
droWil2 scf2_1100000004577:1079048-1079262 - ATTTAT--------------------------------ACTTCACTCGTTCGAATGAGTTTTTAC--------TGGCT--T--TTCACAGCTTTA-GG--AACA----AA-------TG-------------------------------------------------A------------------TTT--------TAA------------------------AATCCGAAAAGTACTTGGTATTCAA-TGAATT------A---GTATTC--------------AGTTTTTATACCCT------------TGC--A------G------AGGGTATTATAAAAT---------TGGTCAGATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATA---TATTCTTGATCAGCATGAG
droVir3 scaffold_13047:274678-274889 - TTTCTT----------------------ATTCATTTTTGGTTTCCT-TTCTGATTGAGTTTTTCT--------GAATATAA--GTTCCTCGTCACTGC--AATA---------------AGACATTAAGTACCAA------------------AA--------------------------------------------------------------------------------------------------TGTTGAGA----------TAGACAATTA-----TTTCACCTGAACCC-------ATTGAAAAT--TGGTAAAA------AGAGTATTATGTATT---------TGTGCAATTGTG--C-----------AAAAGCATCTCCGACCCCATAAGGTATCTA----ATTCTTGATCAGCATAAA
droMoj3 scaffold_6473:6286961-6287194 + ATAGTT------------------------------------TGTTTTTAAGTATAGTCCCTC-T----------ATGCAA--TTCTCATGAATT-TT--AATA--TGAC-------TTAAGAGCGTAGAAAAAA------------------CGAAT-------ATAG------------------GCT--------------------AAGCATTCC------A-------------------------TTAGTT----------GTAATT--------------GGTTTTTATACCCTGAACCCATTGAAAAT--GGGAAATC------AGGGTATAATGGTTT---------TG-TGAAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATA---TATTCTTGATCAGGACGAC
droGri2 scaffold_15252:9570811-9570963 - TGGA--------------------------------------------------------------------------------------------------CA--CAAT--TTACTCAAGAATTTAAGCACAAA------------------AACAT-------TTCA------------------TTT--------------------------------------------------------------------------------------------------GATTTGATTTCT--------------------GTTAAA------AGGGTATAATGGTTT---------TGTGTAAAAGTATATAACAAGCAGAAGGAAGTATTTCCGATATCATAAGTTATATA---TATTCTTGATCAGCATCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATCGTCGTTGG--AGC-ACCCGTTTCTCGTCAATTTATGGTTCTCTTTTCAGGGTAAGTCTTCAC--------AGGCACAA--TTCTCGAGCATA-TG--AACA--CAAT-------CGAGTATCCAAACGAGGA------------------AACAT-------GTAA------------------TCC--------------------GAGGATTCC------AAC----------------------------------------T---T--------AGT---------------T-------GTTGCTCGT--AGAGTAAA------AGGGTATACTATATT---------CGTTGAAAAATAAGTAAGAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATACCCTATTCTTGATAAGGATCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAAGAGGC........................................................24172.00720000003092642100000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAAGAGGCAGA.....................................................27123.002300010048370000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAAGAGGCA.......................................................25114.001400000051530000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAAGAGGCAG......................................................2614.00400000000121000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATACCCTATTCTTGATAAGGA....2712.00200000001010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATACCCTATTCTTGATAAGG.....2612.00200000011000000000
..........................................................................................................................................................................................................................................................................................................................................................T---------CGTTGAAAAATAAGTAAGAGGCAGA.....................................................2612.00200000002000000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAAGAGG.........................................................2312.00200000000020000000
..............................................................................................................................................................................................................................................................................................................................................................................TAAGTAAGAGGCAGAAGGAAGCGTT...........................................2512.00200000000001010000
..................................................................................................................................................................................................................................................................................................................................................................................TAAGAGGCAGAAGGAAGCGTTTCCGACCA...................................2911.00100000001000000000
................................................TCAGGGTAAGTCTTCAC--------AGGCACAA--TT.............................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATACCCTATTCTTGATAAGGA....2911.00100000010000000000
......................................................TAAGTCTTCAC--------AGGCACAA--T..............................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................ATACTATATT---------CGTTGAAAAATAAGTA..............................................................2611.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATACCCTATTCTTGATAAGGA....2811.00100000010000000000
........................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAA------AGGGTATACTATA.........................................................................................2541.00400000000004000000
............................................................................................................AT-------CGAGTATCCAAACGAGGA------------------AACAT-------G............................................................................................................................................................................................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAA.................................................................1520.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATACTATATT---------C.............................................................................2540.50200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAG................................................................1620.50100000001000000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATACTATATT---------..............................................................................2440.25100000000001000000
........................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAA------AGGGTATACTAT..........................................................................................2440.25100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................GAGGCAGAAGGAAGCGTTTC.........................................2040.25100000000001000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATACTATAT........................................................................................2340.25100000000001000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTATATT---------CGTTGAA.......................................................................2650.20100000010000000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATAC.............................................................................................18200.20400000000004000000
.....................................................................................................................................................................................................................................................................................................................................................................................GAGGCAGAAGGAAGCGTT...........................................1860.17100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................TAAGAGGCAGAAGGAA................................................1670.14100000000001000000
.............................................................................................................................................................................................................................................................................................................................................GGGTATACTATATT---------CGTTGAAAA.....................................................................2370.14100000001000000000
..............................................................................................................................................................................................................................................................................................................................AGAGTAAA------AGGGTATACT............................................................................................18200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCGTTTCCGACC....................................24200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGTATATA......................27200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................GAGTAAA------AGGGTATACTA...........................................................................................18200.05100000000001000000
droSec2
ATCGTCGTTGG--AGC-ACCCGTTTCTCGTCAATTTATGGTTCTCTTTTCAGGGTAAGTCTTCAC--------AGGCACAA--TTCTCGAGCATA-TG--AACA--CAAT-------CGAGTATCCAAACGAGGA------------------AACAT-------GTAA------------------TCC--------------------GAGGATTCC------AAC----------------------------------------T---T--------AGT---------------T-------GTTGCTCGT--AGAGTAAA------AAGGTATACTAGATT---------CGATGAAAAATAAGTAAGAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATACCCTATTCTTGATAAGGATCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATCGTCGTTGG--AGC-ACCCGTTTCTCGTCAATTTGTGGTTCTCTTTTCAGGGTAAGTCTTCAC--------AGGCACAA--TTCTCGAGCATA-TG--AACA--CGAT-------CGAGTATCCATCCAA---------------------------------GC-GTTCCAAAGGAA-------TGC--------------------GAGGATTCC------AAC----------------------------------------A---T--------TGT-----TGGATGTA----------GTTACTCGT--AGAGTAAA------AGGGTATACTAGATT---------CGTTGAAAAATAAGTAACAGGCAAAAGAAAGAGTTTCCGGCTATATAAAGTATATA---TATTCTTGATCAGAATCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................T---------CGTTGAAAAATAAGTAACAGGCAAAA....................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200020000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T---------CGTTGAAAAATAAGTAACAGGCAAA.....................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAACAGGCA.......................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................TTTCAGGGTAAGTCTTCAC--------AG.......................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T---------CGTTGAAAAATAAGTAACAGGC........................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAACAGGC........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAAAAGAAAGAGTTTCCGGCTT...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAATAAGTAACAGG.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................TCGTCAATTTGTGGTTCTCTTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGTTTCCGGCTATATAAAG............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCGAGCATA-TG--AACA--CGAT-------CGAGTA.......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................T-------CGAGTATCCATCCAA---------------------------------GC-GTT.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AAAGAGTTTCCGGCTATATAAAG............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAGAGTTTCCGGCTATATAAAG............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAGAGTTTCCGGCTATATAAAGT...........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTCAC--------AGGCACAA--TTCTCGAGCA.....................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CTCGAGCATA-TG--AACA--CGAT-------C............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTCTTTTCAGGGTAAGTCTTC...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TCCAA---------------------------------GC-GTTCCAAAGGAA-------TGC--------------------................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTTTCCGGCTATATAAAGTA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................TCCATCCAA---------------------------------GC-GTTCCAAAGG................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TCC------AAC----------------------------------------A---T--------TGT-----TGGATGTA----------GTTACTCGT--A...................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AAGTAACAGGCAAAAGAAAGA..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TT---------CGTTGAAAAATAAGTAACAGGCATC.....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TAAGTCTTCAC--------AGGCACAA--TTCTCGAGCA.....................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAATAAGTAACAGGC........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TTGAAAAATAAGTAACAGGC........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................C----------------------------------------A---T--------TGT-----TGGATGTA----------GTTACTCGT--AGAG................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TG--AACA--CGAT-------CGAGTATCC....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................ATT---------CGTTGAAAAATAAGTAACAGGC........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................TTCAGGGTAAGTCTTCAC--------AGG......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T---------CGTTGAAAAATAAGTAACAGGCAA......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGGATGTA----------GTTACTCGT--AGAGA...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................T-----TGGATGTA----------GTTACTCGT--AGAGTA..............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATACTAGAT........................................................................................25200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGGCTATATAAAGTATATA---TATTCT.............2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAA------AGGGTATAC.............................................................................................24200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATACTAG..........................................................................................23200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATACTAGA.........................................................................................24200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAA------AGGGTATACTAGAT........................................................................................29200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATA---TATTCTTGATCAGAATC..2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TACTAGATT---------CGTTGAAAAATA..................................................................2190.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATACTAGATT---------..............................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATACT............................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000030000000
....................................................................................................................................................................................................................................................................................................................................AA------AGGGTATACTAGATT---------CGTT..........................................................................21200.2040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
..................................................................................................................................................................................................................................................................................................................................................TACTAGATT---------CGTTGAAAAAT...................................................................20100.2020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATA---TATTCTTGATCAGAATC..2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATA---TATTCTTGATCAGA.....25110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCTCGTCAATTTGTGGGA........................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GAGTAAA------AGGGTATACTAGATT---------CGTT..........................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAA------AGGGTATACTAGATT---------CGT...........................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAA------AGGGTATACTA...........................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
......................................................................................................................................................................................................................................................................................................................ACTCGT--AGAGTAAA------AGGG..................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATAC.............................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAA------AGGGTATACTAGATT---------CGTTGAA.......................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATACTAGATT---------..............................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................ATACTAGATT---------CGTTGAAAAAT...................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTAGATT---------CGTTGA........................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTAGATT---------CGTTGAAA......................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACTCGT--AGAGTAAA------AGGGTAT...............................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................AA------AGGGTATACTAGATT---------CGT...........................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATACTAG..........................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTACTCGT--AGAGTAAA------AGGGT.................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GGTATACTAGATT---------CGTTGAA.......................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
...................................................................................................................................................................................................................................................................................................................................................ACTAGATT---------CGTTGAAAAA....................................................................18120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATA---TATTCTTGATCAGA.....22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAA------AGGGTATACTAGAT........................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTAGATT---------CGTTG.........................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGAGTAAA------AGGGTATACTAGATT---------CGTT..........................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTAGATT---------C.............................................................................20200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A------AGGGTATACTAGATT---------CGTT..........................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAA------AGGGTATACTAG..........................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TATACTAGATT---------CGTTGAAA......................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAA------AGGGTATACTAGATT---------CGTTGA........................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A------AGGGTATACTAGATT---------CGT...........................................................................19200.0510000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGTATATA---TATTCTTG...........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AA------AGGGTATACTAGATT---------CG............................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................T--AGAGTAAA------AGGGTATACTAGA.........................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................TTACTCGT--AGAGTAAA------AGGGTA................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAA------AGGGTATACT............................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAA------AGGGTATACTAGATT---------CGTT..........................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATA---TATTCTTGA..........20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAA------AGGGTA................................................................................................21200.0510000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTAGATT---------CG............................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATT---------CGTTGAAA......................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................CTCGT--AGAGTAAA------AGGGTATA..............................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TATA---TATTCTTGATCAGAAT...20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAA------AGGGTATACTAGATT---------CGTTGAA.......................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAA------AGGGTATACTAGA.........................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGT--AGAGTAAA------AGGGTATACTAGATT---------C.............................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droEre2
GCGC---------------CAGTTATTCGACAATATAAAATT------TCAGCTTTAA-A-----ATTATCAAAATCGGAC--TACTGCGCCATA-TA--GCTG--TAATAG-----GAACTGTCCTAATAATG----------------------------------A------------------TTC--------AAAATACAAGAAAAGAA---------------------------------------------------------------------------TTTTATACAC-------GTTACTTGT--AGGGTAACT-----AGATTCTACTAGATT---------CGTTGACAAGTATATAACAGGCAGAAGGAAACGG-TCCGATCATATAAAGTATATA---TATTCTTGATCAGGATCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................A---TATTCTTGATCAGGATC..18200.0510000010
droYak3
TTGC---------AGCGCCCAGTTTTTCGTACATATAT---------TTCGGCTTAACTA-----ATTTTCGATAGCAGAG--CGATAGAGCTTG-TG--GAGA--CGTT-------A----ATCCAA-----------------------------------------------------------CCT--------------------GAAAA-------------------------------CTATATA----------AGTAGT---G--------C-----CTTCTTTATACCC-------GTTACTCGT--AGGGTAAA------AGGGTATAATAGATT---------CGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCAACCATATATAGTATATA---TATTCTTGATCAGGATCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................TACCC-------GTTACTCGT--AGGGTAAA------AGGG..................................................................................................2680.13100000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTATATA---TATTCTTGATC........22180.06101000000000
...................................................................................................................................................................................................................................................................................................................................AAA------AGGGTATAATAGATT---------CGT...........................................................................21200.05100000010000
droEug1
ATTGTTATTGACCAGC-ACCCG-------AA--------CATCTATTATTGGAATAGGTCTTGAG--------GG-CGG-T--CGTCAGTACTAG-TGTGTATA--CAGT-------CAACT-TCGAAATCAGAA----------------------------------------------------------------------------GTAATTTT------AAC-----------------------------------------------------------TCTGATTATACCT-------GTTACTCGT--AGAGTAAA------AGGGTATACTAGATT---------CGTTGAAAAGTATGTAACAGATAGAAGTAAGCTTTTGCGACTCTATAAAGTATATA---TATTCTTGATCAGGATCAASizeHit CountTotal NormTotal
No Reads
droBia1
CTAGTC-------------------------AATAAATCTTATTCTTTATAGTGT------------------------------------------G--ACCAAAGATT-------TCAAAGTTCACAGA-------------------------------------C-AT-------------AA---AAATAAAT-----A------GAATGTTCA------------------------------------------------------------------------AAGGAACTT-------TTTACTCGT--AGAGAAAA------AGGGTTTACTAAATT---------CGTCGGAAAGTATGTAACAGGTATAAAAAAGCGTT------CTCATAAAGTATACA---TATTCTTGATCAGGATCACSizeHit CountTotal NormTotal
No Reads
droTak1
GTTGTT---------------------TATTAATTCATGTTGCTATTTT--AGTCAAGTTTTCAT--------TAGTGAAA--TCTGCAAGGGTA-TT--AAAA--C-----------------------TTCGG------------------CT--------------------------------------------------------------------------------------------------TGCCGAAG----------TTAGCTTCCG-----TCCTAATTATACCC-------GTTACTCGT--AGAGTAAA------AGGGTATACTAGATT---------CGTGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATA---TATTCTTGATCAGGGTCACSizeHit CountTotal NormTotal
No Reads
droEle1
ATGTCCGTCTA--TCC-GTCCGATTCTACGCAAACTAGACTCTCAGTTTTAA----AGCCATCAT--------AG---CAT--TCAGCAACCATA-GA--AACA--CGCT-------GAAGAATA--AATGAAAA----------------------------------------------------------------------------AAAATTAT------AAC----------------------------------------T---T--------TGC---TGTTTTTATACCCT------------TGC--A------G------AGGGTATTATAATTT---------CAGTCAGAAGTTTGCAACGCAGTCAAGGAGACATCTCCGACCCTATAAAGTATATA---TATTCTTGATCAGCATCAGSizeHit CountTotal NormTotal
No Reads
droRho1
GTCGGT--------GT-ACACGATTCTGCAAAATCTATTGCACGGTTTTCAG----ATTTTGCAC--------AG---TAT--TTCTCTACCAGA-TT------------------------------------CCTCAGGTAACCCTGTCGAGTATTTTTTTTAGA-GCA--------------AC---AAATAACT-----C------GACTTTTTGGGCGAAAA-----------------------------------------------------------TCGTGGTTATACCC-------ATTACTCGT--AGAATAAA------AGTGTATATTGTATT---------CGTGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATA---TATTCTTGATCAGGGTCACSizeHit CountTotal NormTotal
No Reads
droFic1
CAGTCT-------------------------------------------------------TCA------------------------AATATAG-CG--AACA--CAAT----------GCATAAAGGCTAAAC------------------AACAT-------CGAA------------------G----------------------------------------------------------CTATGAC----G-----ATTATT---C--------T-----ATTCATTATACCC------------TTGC--AGAGCAA-------AGGGTATTATAATTT---------TGGCCAGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATA---TATTCTTGATCAGCATCACSizeHit CountTotal NormTotal
No Reads
droKik1
CAAAAT------------------------------------------------------------------------------TCTGAACAA-A-TA--AA-A--TAAG-------CTTATATCTCAGAGTAGA------------------TAAAA-------ATAG------------------TTT--------GAAAAA--------------C------AAC----------------------------------------G---A--------AGTTATCATTTTTATACCCT------------TG----------C------AGGGTATTATAATTT---------CGGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATA---TATTCTTGATCAGCATGAASizeHit CountTotal NormTotal
No Reads
droAna3
TGAA------------------------------------------------------TTTTCAC--------CGGATCAT--TTCAAAATTTTG-TG--AACA--CATT-------TCAAAATATATACA-------------------------------------C-TTTAAGAAAATGCAA--AAA--------------------AAAAAATT------------------------------------------------------C--------G-----ATTTTTTATACCCT------------TGC--A------G------AGGGTATTATAATTT---------TGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATA---TATTCTTGATCAGGATCACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGG..................................................19200.65130000013
...............................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACATCTCC........................................27200.102200000
.............................................................................TCAT--TTCAAAATTTTG-TG--AACA--CATT-------TC...........................................................................................................................................................................................................................................................................................................................28200.051100000
.........................................................................................................................................................................................................................................................................................................................TGC--A------G------AGGGTATTATAATT........................................................................................19200.051001000
................................................................C--------CGGATCAT--TTCAAAATTTTG-TG--A.............................................................................................................................................................................................................................................................................................................................................24200.051010000
................................................................C--------CGGATCAT--TTCAAAATTTTG-TG--AA............................................................................................................................................................................................................................................................................................................................................25200.051010000
droBip1
AATTCT-------------------------------------------------------TCAC--------A---AAAT--TTCTTAAACTTA-TT--TACA--CAAA-------CGT---------------------------------------------CATA------------------TTCG-------------------CAAGATTAA------A--------------------CTATTAA----------AATGAT---A--------TGT---AGTTTTTATACCCT------------TGC--A------G------AGGGTATTATAATTT---------TGTCCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATA---TATTCTTGATCAGGATCACSizeHit CountTotal NormTotal
No Reads
dp5
AAGTCT-------------------------------------------------------TC----------TGGCTGAA--TTAGTAATCTGA-TT--GTCA--AGAT-------CACTTACCTACATGAGGA------------------ATGAC-------ATAA------------------CTC--------------------TTAT------------------------------------------------------A---T--------T-----GTTTTTTATAACT-------GGCACTTGA--AGAGTCTAGGGATACGATTACAATAGTTTTGTGGGGAA--TGTGGATATGTGTAACACCCAGAAGGA-CCGTTTCCGACCGTATAAAGTGTATA---TATTTTTGTTTATCATCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTCATT--TCG--GGC-AC-------------GTGTACGCTGCTGACTTCATGGAAAATTTTCAC--------AAGGGCAAAGTCCGCGATGAAA-TG---------------------------------C---------------------------------------------------------C--------------------GAGAT---------------------------------------CTCCACACGAGTGCT---T--------AGT---TTTTTTTATACCC-------GATACTCAAAATGAGTATT------GGGGTATATTAGATTTGTGGTAAA--AGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATA---TATTCTTGATCAGCATCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAA--AGTGGATGTG..................................................................20202.65530000053
.........................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAA--AGTGGATGTGTGTAACG...........................................................28200.306000006
.............................................................................................................................................................................................................................................................................................................................................................TGGTAAA--AGTGGATGTGTG................................................................19200.153000003
...........................................................................................................................................................................................................................................................................................................................................................TGTGGTAAA--AGTGGATGTGTGTAACGTC.........................................................28200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................GTGGATGTGTGTAACGTC.........................................................18200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCCGAC.....................................24200.051000001
droWil2
ATTTAT--------------------------------ACTTCACTCGTTCGAATGAGTTTTTAC--------TGGCT--T--TTCACAGCTTTA-GG--AACA----AA-------TG-------------------------------------------------A------------------TTT--------TAA------------------------AATCCGAAAAGTACTTGGTATTCAA-TGAATT------A---GTATTC--------------AGTTTTTATACCCT------------TGC--A------G------AGGGTATTATAAAAT---------TGGTCAGATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATA---TATTCTTGATCAGCATGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................AAT---------TGGTCAGATGTTTGTAAC............................................................21200.10220000
..................................................................................................................................................................................................................................................................................................TTTTATACCCT------------TGC--A------G------AGGGT.................................................................................................21200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCC..................................25200.05100010
droVir3
TTTCTT----------------------ATTCATTTTTGGTTTCCT-TTCTGATTGAGTTTTTCT--------GAATATAA--GTTCCTCGTCACTGC--AATA---------------AGACATTAAGTACCAA------------------AA--------------------------------------------------------------------------------------------------TGTTGAGA----------TAGACAATTA-----TTTCACCTGAACCC-------ATTGAAAAT--TGGTAAAA------AGAGTATTATGTATT---------TGTGCAATTGTG--C-----------AAAAGCATCTCCGACCCCATAAGGTATCTA----ATTCTTGATCAGCATAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ATAGTT------------------------------------TGTTTTTAAGTATAGTCCCTC-T----------ATGCAA--TTCTCATGAATT-TT--AATA--TGAC-------TTAAGAGCGTAGAAAAAA------------------CGAAT-------ATAG------------------GCT--------------------AAGCATTCC------A-------------------------TTAGTT----------GTAATT--------------GGTTTTTATACCCTGAACCCATTGAAAAT--GGGAAATC------AGGGTATAATGGTTT---------TG-TGAAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATA---TATTCTTGATCAGGACGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAG...................................................21200.051100000
.....................................................................................................................................................................................................................................................................................................TATACCCTGAACCCATTGAAA........................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................................AT--GGGAAATC------AGGGTATAATGGTTT---------..............................................................................25200.051000010
................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAATCATCGCAG.......................................27200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAATCATCGCAG.......................................26200.051000010
...............................................................................................................................................................................................................................................................................................................................................GTATAATGGTTT---------TG-TGAAAA.....................................................................20200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAATCATCGCAGACC....................................26200.051000010
droGri2
TGGA--------------------------------------------------------------------------------------------------CA--CAAT--TTACTCAAGAATTTAAGCACAAA------------------AACAT-------TTCA------------------TTT--------------------------------------------------------------------------------------------------GATTTGATTTCT--------------------GTTAAA------AGGGTATAATGGTTT---------TGTGTAAAAGTATATAACAAGCAGAAGGAAGTATTTCCGATATCATAAGTTATATA---TATTCTTGATCAGCATCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:01 AM