ID:

dsi_30190

 Coordinate:

2r:5806973-5807197 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.2 -24.1 -23.8

Flybase annnotation

CDS [2r_5806785_5806945_-]; five_prime_UTR [2r_5806946_5807268_-]; exon [2r_5806785_5807268_-]

No Repeatable elements found

Sense Strand Reads

#####################################################################################################################################################################################################################################################################################################################################
CTCACTGCATAAAAAAAAATTGACTGGGGGCCGCCTTGTCAAAATTTGCCGTATGTTTATAAAGGGGCGTGGCAGACTGACTATGTGTATGTGGCCGCATCAGCGAACATTATCAGGCTAACACTACGTCGATCGGTCGATCCTCAATTGCGCTCCCATCAGTAGAAGCTCAGTGTGCTTTTCTTTGCTGCCGGGCTGTGACATCACTGTCAGTGCTGCTGCCTTTTCTCCTCTCCCGTTCGGCATTCATCTAAATTCAACTTGAAATTAAATAGATCTTTTGGCCAAAAAACTCAGCCACCATGTGTCAATCCGGCGGCCAGAT
**************************************************************************************************************************.....(((((....)))))...((...((((.(((..((((((((((.......)))))....)))))..)))...(((((....)))))))))...))...***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR902009
testis
 M025
embryo
 M053
female body
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
..........................................................................................................................ACTACGTCGATCGGTCGA......................................................................................................................................................................................... 18 0 1 5.00 5 0 4 0 0 0 1 0 0 0 0 0 0 0
.............AAAAAATTGACTGGGGGC...................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................ATTAAATAGATCTTTTGGC........................................ 19 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................CTGTCAGTGCTGCTGCCT..................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTCCCGTTCGGCATTCATCTAAATTC................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................CAACTTGAAATTAAATAGATCTTTTGGC........................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGCTGCTGCCTTTTCTCCTCT........................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTGGTGACGGGCTTTGACATC........................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............AAAATTGACTGGGGGCCGCCTTGTCA............................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTGCTGCCGGGCTGTGACATC........................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TCAGGCTAAAACTACGTCGATCGGTA........................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................AAATAGATCTTTTGGC........................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................AATTGACTGGGGGCCGCCTTGTCA............................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CATCACTGTCAGTGCTTCTGCC...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCTGCCGGGCTGTGACATCACTGTC.................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCACTGTCAGTGCTGCTGCCT..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CTTTGCTGCCGGGCTGTGACATC........................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAAATAGATCTTTTGGCC....................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCTTTGCTGCCGGGCTGTGACATCAC...................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATCACTGTCAGTGCTGCT......................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TTAAATAGATCTTTTGGC........................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCCATCAGTAGAAGCTCAG........................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGAAATTAAATAGATCTTTTGGCCAAAA................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AATTAAATAGATCTTTTGGCC....................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................ATCAGTAGAAGCTCAGTGTGC................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTGCTTTTCTTTGCTGCCGGGCT................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................GCCGGGCTGGGACATCAC...................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................TGACTGGGGGCCGCCTTG............................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................CAGCGAACATTATCAGGCT.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GACTGACTATGTGTATG.......................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AAATAGATCTTTTGGCCAAAAAACTCAGC........................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCTTTGCTGCCGGGCTGTGACATCA....................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................ATTAAATAGATCTTTTGGCC....................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........TAAAAAAAAATTGACTGGGGGC...................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CTTTTGGCCAAAAAACTCAGCC.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTTGTCAAAATTTGCCGTATGTTTA.......................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTCTTTGCTGCCGGGCTGTGACA.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TCAGCGAACATTATCAGGCTAACAC......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATCACTGTCAGTGCTGCTGC....................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................CCATCAGTAGAAGCTCAGT....................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........AAAAAAAAATTGACTCGG......................................................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CATCACAGTCAGTGCTCCTT........................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................AAAGGGCGTGGAAGACTG...................................................................................................................................................................................................................................................... 18 2 8 0.38 3 0 0 0 3 0 0 0 0 0 0 0 0 0
...............................................................GGGGCGTGGGAGACTG...................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ACACTAGGTCGAGCGCTCGA......................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................TCCGTAGTAGCTCAGTG...................................................................................................................................................... 17 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGCTGCCGGGCCGTGCCA.......................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CATCAGTGTCTGTGCTCCTGC....................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................AAGGGCGTGGAAGACTG...................................................................................................................................................................................................................................................... 17 2 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0
...........................................................TAAAGGGCCGTCGAAGACT....................................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................GCTGCCGGGCCGTGCCA.......................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................TTGCTGCCGGGCCGT.............................................................................................................................. 15 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGCTGCCGGGCCGTGCCT.......................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GAGTGACGTATTTTTTTTTAACTGACCCCCGGCGGAACAGTTTTAAACGGCATACAAATATTTCCCCGCACCGTCTGACTGATACACATACACCGGCGTAGTCGCTTGTAATAGTCCGATTGTGATGCAGCTAGCCAGCTAGGAGTTAACGCGAGGGTAGTCATCTTCGAGTCACACGAAAAGAAACGACGGCCCGACACTGTAGTGACAGTCACGACGACGGAAAAGAGGAGAGGGCAAGCCGTAAGTAGATTTAAGTTGAACTTTAATTTATCTAGAAAACCGGTTTTTTGAGTCGGTGGTACACAGTTAGGCCGCCGGTCTA
*****************************************************************************************************.....(((((....)))))...((...((((.(((..((((((((((.......)))))....)))))..)))...(((((....)))))))))...))...************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................................TGCAGCTAGCCAGCTAGGAGT................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................TTTAAACGGCATACAAATATT....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TCGGTGGTACACAGTTAGGCC......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................GAGGGTAGTCATCTTCGAGTCA....................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................TTAAACGGCATACAAATATTT...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................GACAGTCACGACGACGGAAAA.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACAGTCACTACGACCGAAA................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................GGGCAAGCCGTGAGTA........................................................................... 16 1 3 0.33 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................CCGTAAGGAGATTTAA.................................................................... 16 1 3 0.33 1 0 0 0 0 1 0 0 0
...........................................................................................ACCGGAGTAGTCGCGTGT........................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0 0 0
....................................ACGGTTTTAAACGGCA................................................................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0
............................CCGGCGGAACATATTTAA....................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................AGTGGGCAAGCGGTGAGTAG.......................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................GAGGGAAAAGAGGAGA........................................................................................... 16 1 9 0.11 1 0 0 0 1 0 0 0 0
.....................................CAGGGTTAAACGGCATA............................................................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................TACCTAGAAAACGGGTTT.................................... 18 2 17 0.06 1 0 0 0 1 0 0 0 0
...........................................................................AGACTGATACACATCC.......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
....................................ACGGTTTGAAACGGCAT................................................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 11:56 PM