ID:

dsi_30184

 Coordinate:

3r:4642294-4642443 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.5 -24.4 -24.3

Flybase annnotation

exon [3r_4641956_4642293_-]; CDS [3r_4641956_4642293_-]; intron [3r_4642294_4643891_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATTTGCTATACCTATAGCTATGGCTACATATGTATGTTTGTATATATCTTGCGGCTGCGGCTGATTAGATAAACCAAGTGCCCGAGGGGCTCACGATGACGTCAGCGGCAAACAGCTCGACTTGGTGACACGCTTGTAATCTGTTGTTAATTGAGAATCGCTATAAGAGATATGTAACGAATGTCTGATTTGTTTCAGGCCCGGAATACGGAACCACGGAGGCAGCCTGGAAGGGCGTGCTGACGGAA
*********************************************************************.....(((((((...((((..(((.(((....))).))).........)))))))))))............((((.((((...............)))).)))).((.(((((((.....))))))).))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body
..................................................................................................................................................TGTTAATTGATAATCGTTATAAT................................................................................. 23 3 3 49.67 149 43 62 32 8 0 3 0 0 0 1 0
..................................................................................................................................................TGTTAATTGATAATCGTTATAAGTGA.............................................................................. 26 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TGTTAATTGAGAATCGTTATAATTGA.............................................................................. 26 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TACGGGACCACGGAGG.......................... 16 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................TGAACAGCTCGACTAGGTGACA...................................................................................................................... 22 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCCTGGAAGGGCGTGCTGACGGA. 23 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................TTGTTAATTGATAATCGTTATAAT................................................................................. 24 3 3 1.33 4 0 0 2 0 1 1 0 0 0 0 0
........................................................................................................................................................................................GTCTGATTTGTTTCA................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................ATATACCTTGCGGCGGCGGTT.......................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................GATAAACCAAGTGCCCGAGGGGCT............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................................ATATACCTTGCGGCGGCGG............................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................CACGATGACGTCAGCGGCAAACAGCTC.................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................AGCCTGGAAGGGCGTGCTGAC.... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TGTTAATTGATAATCGTTATAATA................................................................................ 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TGTTAATTGATAATCGCTATAATT................................................................................ 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................CTACATATGGAGGGTTGTA.............................................................................................................................................................................................................. 19 3 16 0.31 5 0 0 0 0 0 0 3 0 0 0 2
..................................................................................CCCGAGGGGCTCTCGCT....................................................................................................................................................... 17 2 19 0.21 4 0 0 2 0 0 0 0 0 0 2 0
...................................................................................................................................................GTTAATTGATAATCGTTATAAT................................................................................. 22 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGTGGCAGCCTGGTAGCGC............ 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................CCGAGGGGCTCTCGCT....................................................................................................................................................... 16 2 20 0.10 2 0 0 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................CCTGGAAGGGCGTGA........ 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
.............................................ATACCTTGCGGCGGCGG............................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.........................CTACATATGGGTGGTTGTA.............................................................................................................................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GTGCGTACTGACGGAA 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.........................CTACATATGGACGGTTGTA.............................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TATAAACGATATGGATATCGATACCGATGTATACATACAAACATATATAGAACGCCGACGCCGACTAATCTATTTGGTTCACGGGCTCCCCGAGTGCTACTGCAGTCGCCGTTTGTCGAGCTGAACCACTGTGCGAACATTAGACAACAATTAACTCTTAGCGATATTCTCTATACATTGCTTACAGACTAAACAAAGTCCGGGCCTTATGCCTTGGTGCCTCCGTCGGACCTTCCCGCACGACTGCCTT
***************************************************.....(((((((...((((..(((.(((....))).))).........)))))))))))............((((.((((...............)))).)))).((.(((((((.....))))))).))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
.................................................................................................................................................AACAATTAACTATTAGCAATATTA................................................................................. 24 3 3 66.33 199 186 10 1 0 0 0 1 1 0 0 0 0
..................................................................................................................................................ACAATTAACTATTAGCAATATTA................................................................................. 23 3 3 43.33 130 62 43 17 0 0 0 3 4 0 1 0 0
...................................................................................................................................................CAATTAACTATTAGCAATATTA................................................................................. 22 3 7 33.00 231 124 68 5 9 15 7 0 0 0 1 2 0
.........................................................................................................................................................ACTCTTACCGAAATTCTCTAA............................................................................ 21 3 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTCGGACGTTCCAGCACG........ 20 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................CTCTTACCGAAATTCTCTA............................................................................. 19 2 2 1.00 2 0 0 0 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................TGACTCTTACCGAAATTCTCTA............................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGACTCTTACCGAAATTCTC............................................................................... 21 3 5 0.80 4 0 0 0 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................TGACTCTTACCGAAATTCTC............................................................................... 20 3 8 0.63 5 0 2 0 2 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................CCTTCCCGGAGGACTCCCTT 20 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................ACTCTTACCGAAATTCTCT.............................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CAATTAACTCTTAGCAATAT................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GCAGGCCCCGTTTGTCCAGC................................................................................................................................. 20 3 6 0.33 2 0 0 0 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................CTCTTACCGAAATTCTCTAA............................................................................ 20 3 8 0.25 2 0 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................TTGACTCTTACCGAAATTCT................................................................................ 20 3 13 0.15 2 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................TCTTACCGAAATTCTCTA............................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACTCTTGTCGATAGTCTCTA............................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................AGCTGAACCACTCTG..................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................ATTCCTTGGTGCCGCC.......................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:18 AM