ID:

dsi_30183

 Coordinate:

3r:24669586-24669780 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.7 -36.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+

Sense Strand Reads

GGATGTGACAACGGCCACGCCGGATCTCTATAGCAAAATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGCAGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAAACACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGACAGCACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATCCAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCCTCCAGTTCATCCATCACACCACCACCACCAAGTACT
****************************************************...........((.((((.................(((((...((((((.(((((.((.((................)).)).))))).))))))))))).......))))))....****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 M024
male body
....................................................AATGTTCCACAGCATGTCATA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................CAGCAACAACAGACAGCACTC.............................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
...............CACGCCGGATCTCTATAGCAAG.................................................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................CACCTAGAAACACAGCAGCA................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................AGCAGCAGCAACAACAGACAGC.................................................................................................................................. 22 0 2 0.50 1 0 0 0 0 1 0
.............................................................................................................................................................................................................................TTCTGACGTTGCTAACGCC....................................................... 19 3 15 0.07 1 0 0 0 0 0 1
......................................................................................................................................AGCAACAGCAGCAGCAGCA.............................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CCTACACTGTTGCCGGTGCGGCCTAGAGATATCGTTTTATACGTCGTTACCATTACAAGGTGTCGTACAGTATGACGTCGTCGTCGTCGACGTGTACGACGTCAACGTCGTCGTTGTGGATCTTTGTGTCGTCGTCGTTGTCGTCGTCGTCGTTGTTGTCTGTCGTGAGTTACTCTGTCAGTCGTGTGGTTCGTGGCTATGATTAGGTTCGGAGAACGGGTAAGACAGTAACGATGGCGGGTGTCAGCGAGGAGACAGGAGGTCAAGTAGGTAGTGTGGTGGTGGTGGTTCATGA
******************************************************************************************************************************...........((.((((.................(((((...((((((.(((((.((.((................)).)).))))).))))))))))).......))))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR902008
ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.............................................................................................................................................................................................................................................................GACAGGAGGTCAAGTAGGTAG..................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................TACCATTACAAGGTGTCGTAC................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCGTGGCTATGATTAGGTTC..................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
................TGCGGCCTAGAGATATCGTTT.................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTCAGTCGTGTGGTTCGTG.................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TTCGGAGAACGGGTAAGACAGTAAC............................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AACGATGGCGGGTGTCAGCGA............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AGGAGGTCAAGTAGGTAGTG................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCGTGGCTATGATTAGGTTCG.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........GCCGGTGCGGCCTAGAGATAT....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TCGTTGTTGTCTGTCGTGAGT............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........GCCGGTGCGGCCTAGAGATA........................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGGGTAAGACAGTAACGATGGCGG....................................................... 26 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................ACTCTGTCAGTCGTGTGGTTC....................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................GTCGACGTGTACGACGTCAACGTCG......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GATGGCGGGTGTCAGCGAGG........................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................GACAGGAGGTCAAGTAGGTA...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGACAGTAACGATGGCGGGTG.................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................CGTCGTGAGTTACTCTGTCAG.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCGGAGAACGGGTAAGACAGT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TATCAGCGAAGAGAGAGGAGG................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ACGATGGCGGGTGTCAGCGA............................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AGACAGGGTGTCAGGTAGGTAG..................... 22 3 3 1.00 3 0 0 0 0 3 0 0 0 0 0 0
..............................................................................................................................................................................................TCGTGGCTGTGGTTAGGTTC..................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AACGGGTAAGACAGTAACGAT............................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GGAGGTCAAGTAGGTAGTGTG................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GTAGGTAGTGTGGTGGTGA.......... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTGTCTGTCGTGAGTTACTCT....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................TATAATGTCAGTCGTGTGGTT........................................................................................................ 21 3 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................................................TTAGGTTCGTAGAAAGGGGAA........................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................GTAGACAGGATGTCAGGTAGGT....................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TCGGTTAGTCGTGAGGTTCGT..................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................AAGTAGGTAGTGTTGT............... 16 1 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0
....................................................................................................................................................................................................................................................CAGCGCGGAGCCAGGAG.................................. 17 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................TAGACAGGATGTCAGGTAGGT....................... 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................GTGGCGATGATTAGGTTCTC................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................ACAGGAGGTCACGAAGGTA...................... 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................GGCGATGATTAGGTTCTC................................................................................... 18 3 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
.....................................................TACAAGGTGTCGTACG.................................................................................................................................................................................................................................. 16 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................GGCAGCGCGGAGCCAGGAG.................................. 19 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................GAGCGTGGCGATGATTAGG........................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................TGTACGTCGTCAACGT........................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:24669536-24669830 + dsi_30183 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAAACACAGCAGC------AG---------------------------------------------------CAA---------------------------------------------CAGCAGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCCATC---ACACCACCACCA---------CC------AA-----------------------------------GTACT
droSec2 scaffold_33:220449-220682 + CTA-------------------------TATAGCCA-ACAATGCCGCAGCAGCAATGC--CGCAGCACCAAGCTCATC------------------AACCGC----------------------AACAGCAGCACCTGCACCAGCAGTCGCATCAGCAGCCGCATCAGCACCAACATCAGC------AG---------------------------------------------------CATCAGCAACACCAGCAACACCAACAGCCCCAACA------------ACATCAG-------------------CAACATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCAGCAGCAGCAACAGG-C--------CAACTT-----------------TCTCCACATCCAGCAGTCGCTA---------------------------------CAACACAACCA---------CC------AA-----------------------------------CTGAG
dm3 chr3R:25309416-25309728 + GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAAACACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTATCC------TCCAGTTCATCCACC---ACACCACCACCA---------CC------AA-----------------------------------GTACT
droEre2 scaffold_4820:2696138-2696429 - der_929 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACATCTAGAGACACAGCAGC------AG---------------------------------------------------CAG------------------------------------------------CAGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATC--------CAAGCCTATTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCCACC---ACACCACCACTA---------CC------AA-----------------------------------GTACT
droYak3 3R:21174440-21174743 - dya_1110 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AG---------------------------------------------------CAG----------------------------------------------------------------------CAACAGCAGCAGCAGCAGC-------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCGCACACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCCATC---ACACCACAACCA---------CC------AA-----------------------------------GTACT
droEug1 scf7180000409787:252283-252571 - GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------------------------------AGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------AACAACAACAGACTGC------------------------ACTACATGATACAGTCAGCACACCACCAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTCCAG------TCCAACTCATCCACA---ACACCGCCACTA---------CC------AC-----------------------------------GACCT
droBia1 scf7180000302136:2797853-2798153 - GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AG---------------------------------------------------CAA------------------------------------------CAGCAGCAGCTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCAACAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TCCAATTCATCCACAACAACAACACCACCA---------CC------AA-----------------------------------GTTCT
droTak1 scf7180000415765:870564-870865 - GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATTCTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------GCAGCAGCAGCAGCAGCTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCAACAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TCCAATTCATCCACC-----AACACCACAA-----------------------------------------------------------
droEle1 scf7180000491280:1524117-1524420 + GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAGCACCTAGAGACACAGCAGC------AG---------------------------------------------------CAG------------------------------------------CAACAACAACTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAACAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCACCAACCGATACTAATC--------CAAGCATCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TTCAACTCATCCAC------ACCACCACCACCG------CCACAACCAA-----------------------------------GTTCT
droRho1 scf7180000777929:10667-10961 + GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGCTGCAGCAGCAACACATAGAGACACAGCAGC------AG---------------------------------------------------CAG----------------------------------------------------------------------CTACAACAGCAGC-------------------------------------------------------------------------------------------------------------AGCAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCAACAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TCCAATTCATCCAC------ACCACCACCA---------CC------AA-----------------------------------GTTCT
droFic1 scf7180000453776:610272-610572 + GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAGCACCTAGAGACACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------CTACAACAGCAGC-------------------------------------------------------------------------------------------------------------AGCAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACAAGCAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCCACTGTCTCCAACTCATCCAC---------ACCACCA---------CC------AA-----------------------------------GCTCT
droKik1 scf7180000302466:120051-120282 - GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCT------------------------------AGGGATGCAGCAGC------AG---------------------------------------------------CAG------------------------------------------CAGCAG----------------------------------C-------------------------------------------------------------------------------------------------------------AGCTGAATCTGACCAC------------------------ACTCCATGATACA------------CCGCCCGATACTAATC--------CAAGCCTATCGCCCATTCTGTCATTGTTACCGCCCGCAGTTGTCCCGCTGT---------CCAATTCATCCAC------ACCACCA--------------------------------------------------------------
droAna3 scaffold_12911:4997159-4997476 + dan_447 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCTCAGCATATCATACTCCTCCAGCAGCAACAACATCAACAAC----------------------AACAGCAACAGTTGCA---GCTGCAGCTGCAACAGCAGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------CT-------------------------------------------------------------------------------------------------------ACAAC------------AACAACAACAGACAACACCTACTACTCGTAGCATAAGTGAACTCAATGAGACAGTCAGCCCACCTACAACCGATACTAATT--------CAAGCCTATTACCCATTCTATCATTGTTACCGCCCACAGTTGTTCCACTT---------TCCAATTCATCCAC------ACCACCACCA---------TC------------------------------------------------
droBip1 scf7180000396640:1833784-1834080 + GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCTCAGCATATCATACTCCTCCAGCAGCAACAACATCAACAAC----------------------A---ACA------------GCA---------------------ACAGTTGCAGCTGC------AG---------------------------------------------------CAG------------------------------------------CAACAGCAGCTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAACAACAGACAACACCTACTTCTTGTAGCATAAGTGAACTCAATGAGACAGTCAGCCCACCTACAAACGATACTAATT--------CAAGCCTATTGCCCATTCTATCATTGTTACCGCCCACAGTTGTTCCATTAT---------CCAATTCATCCAC------ACCACCACCA---------TC------------------------------------------------
dp5 2:2170436-2170790 + GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCCCAGCATATCATACTCC----------------------------------------------AGCAGCAGCAGCTGC------TGCA---GCAACAGCAATACCAACAACATCAGCAGCAGCAAC------A---------------------------------------------------------------------------------------------GTTGCAG-------------------CTACAGCTGCAACA----------------------------------------------------GCAGCAGCCACTAGCACTCGCACAAGCACAGCC------ACAAC------CACAAACACAAATACAG---------ACCACTCGTAGTCATAGTGAACTAAATGAGACAGCATCCAATACACCCTCCAATACTAATC--------CCAGCCTCTTGCCCATCTCATCATTGTTACCGCCCACAGTTGTTCCAACA---------TCCAATACCTCCACA---CCACCACCACTA---------CC------AG-----------------------------------CACCA
droPer2 scaffold_7:2338039-2338405 + dpe_2024 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCCCAGCATATCATACTCC----------------------------------------------AGCAGCAGCAGCTGC------TGCA---CCAACAGCAATACCAACAACATCAGCAGCAGCAAC------A---------------------------------------------------------------------------------------------GTTGCAG-------------------CTACAGCTGCAACA----------------------------------------------------GCAGCAGCCACTAGCACTCGCACAAGCACAGCCACAGCCACAACCACAACCACAAACACAAATACAG---------ACCACTCGTAGTCATAGTGAACTAAATGAGACAGCATCCAATACACCCTCCAATACTAATC--------CCAGCCTCTTGCCCATCTCATCATTGTTACCGCCCACAGTTGTTCCAACA---------TCCAATACCTCCACA---CCACCACCACTA---------CC------AG-----------------------------------CACCA
droWil2 scf2_1100000004902:8090743-8090998 + dwi_3144 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGTAATGGTAATGTTCCACAACA------GCTAC----------------------------------------------AACAACAGCAACTGCTTTTGCTACAACAGCAACAG------------------AAGC------TG---------CA------------------------------------------------------------------------------ACTACAATTACAGTCGCAAGAACAAGCACAGACAGCT-------------------------------------------------------------------------------------------------------ACAAC---------------AACA----------------------------------------AAAACAACTACAACTCCAACTCCAAATACTAATT--------CAATCCTTATGCCCATTTCATC---------ACCTACAGTTGATCCATCACCC------ATCATCACATCC------------------------------------A-----------------------------------ATACC
droVir3 scaffold_12928:4745592-4745891 - GCA----ACAACAGGCACAACAG----CAACAGCAG-CGCGAGCAACAG----AATATTATACAGCAAATTGTGGTGCA------------------ACAA-------ACAGCCACACAACAGCACCAGCAGCAGCAGCACC------------ATCAGCAACAGCAGCAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------GCAGCAA-------------------CAACAGGCACAGCA----------------------------------------------------GCAGCAGCA------------------------------------------------GCA----------------------------------------------GCAGCAGGCGCAACAGCAACAATTGC--AGC--------TAAGCAGCGTGCCCTTCTC------------------AGT---------------------TAGCTCAACAAC------AACACC--CGCTGGCATTGCCACCT-CGAGCGCATTGCAGGCCGCATTGTCTGCCTCTGGTGCTGTCTT
droMoj3 scaffold_6540:26783199-26783518 + GGATGTGACATCGGGCACGCCAGATCTATACAGCAAAAATTTGCAGCAATGGTAATATTATGCACCA---------------------ACTACAACAACAA------C----------------A---ACAGCACCAGCTGTTGCT------TGCA---------------CAGCAGCAGCAGCAGA------TGCTGCAGCTGCAGATGCAACATGAGAC------------------------------------ACAACTACAGCTTCAGCAACAACAGCAGCAGCAGCAG----------------------------------------------------TCAAATATCATTAGTCA-------------------------------------------------------------------------------------------------------------------TCGTCAT------ACAACGACAACAACAGATAGTGATATAACAAATGAAGCAT-TTGCAAA---GGCAACTGCAACAG-CCACAGTAGCAGCAGCAGC----------A--GCAGCAACA---ACACCAACAATA---------CC------AG-----------------------------------CAACA
droGri2 scaffold_14624:3600447-3600858 + dgr_84 GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATTTGCAGCAACGGTAATGTTACACTCCA---------------------ACAACATCAACAACAACAAC----------------A---ACAGCAGCAGCTGTTGCTGCA------ACAACAGCA---------TCTGCTGC------------------AGCTGCAAATGCAACATGAAACACAACAACAACTACAACAGCTACAGCTACAACAGCAACAACAACAACAACAGCA------------ACAGCAG-------------------CTACAGCAGCAGCAGCAGCAGCAAACACAGCAAACAAATCTCATTAGTCATAGTCATCATCAAACAGAAGCAGCT------------------------GTTGC------------------AACAGACACAGACACA----------------------GAAAC---AGA---------------AACAGCAAATACTAATT--------CTTCCTTATTACCCATCTCATCATTGTTACCACCCACAGTTGCCTCATTGTCC---------ATCACACCCAC------ACCAACACCAACA------C--------------------------------------------CAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAAACACAGCAGC------AG---------------------------------------------------CAA---------------------------------------------CAGCAGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCCATC---ACACCACCACCA---------CC------AA-----------------------------------GTACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................AATGTTCCACAGCATGTCATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTC.................................................................................................................................................................................................2111.00100000000010000000
...............CACGCCGGATCTCTATAGCAA-G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..................................................................................................................................................................CACCTAGAAACACAGCAGC------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
....................................................................................................................................................................................................................................................................................................AGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------.....................................................................................................................................................................................................2220.50100000100000000000
...........................................................................................................................................................................................AG---------------------------------------------------CAA---------------------------------------------CAGCAGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCA.........................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
CTA-------------------------TATAGCCA-ACAATGCCGCAGCAGCAATGC--CGCAGCACCAAGCTCATC------------------AACCGC----------------------AACAGCAGCACCTGCACCAGCAGTCGCATCAGCAGCCGCATCAGCACCAACATCAGC------AG---------------------------------------------------CATCAGCAACACCAGCAACACCAACAGCCCCAACA------------ACATCAG-------------------CAACATCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCAGCAGCAGCAACAGG-C--------CAACTT-----------------TCTCCACATCCAGCAGTCGCTA---------------------------------CAACACAACCA---------CC------AA-----------------------------------CTGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAAACACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTATCC------TCCAGTTCATCCACC---ACACCACCACCA---------CC------AA-----------------------------------GTACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................................................................................................CAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................20200.55110000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010000000000002000000000000000000000000000000000000000000000040000
.........................................................................................................................................................................AAACACAGCAGC------AGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................AG----------------------------C-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------.....................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................AGC------AGCAGCAGCAGCA------------------------------------------------------------------------------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................19200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AGCA------------------------------------------------------------------------------ACAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................18200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AACACAGCAGC------AGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................GCAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
...................................................................................................................................................................................................CAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000020000000000000000000000000000
.............................................................................................................................................................................ACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................CAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................ACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------AGCAACAACAGA.................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................CAGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------AGCAACAACAG..................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000
..............................................................................................................................................................................................AGCAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CA------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................AGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACATCTAGAGACACAGCAGC------AG---------------------------------------------------CAG------------------------------------------------CAGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCAAGCACCGATACTAATC--------CAAGCCTATTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCCACC---ACACCACCACTA---------CC------AA-----------------------------------GTACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCC.............................................................................34111.001100000011
............................................AGCAATGGTAATGTTCCACAGCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................................................................................................................................................................TAGAGACACAGCAGC------AG---------------------------------------------------CAG------------------------------------------------CAGC----------------------------A............................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..............................................CAATGGTAATGTTCCACAGCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................TGCAGCAATGGTAATGTTCCACAGCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATGAGACAGTCAGCACACCAAG..........................................................................................................................................................................2711.0010000100
..............................................................CAGCATGTCATACTGC----------------------------------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGC------------------------ACTCAATGAGACAGTCA....................................................................................................................................................................................2311.0010000100
..............................................................................................................................................................GCAACATCTAGAGACACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........................................................................................................................................................GCAGCAGCAACATCTAGAGACACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGC------------------------ACTCAATGAGACAGT......................................................................................................................................................................................2211.0010100000
..ATGTGACAACGGCCACGCCGGATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATTCTGTCATTGCTACC.....................................................................................................................2111.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCATTCTGTCATTGCT........................................................................................................................2111.0010010000
..................................................................................................................................................................CATCTAGAGACACAGCAGC------AG---------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAGC------------------------ACTCAATGAGACA........................................................................................................................................................................................2111.0010000100
................................................................................................................................GCAGCAGCTGCACATGCTGCAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCCCATTCTGTCATTGCTACC.....................................................................................................................2511.0010100000
.............................................................................................................................................................AGCAACATCTAGAGACACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC------------------------ACTCAATGAGACAGT......................................................................................................................................................................................2011.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCCATTCTGTCATTGCTACCGCC..................................................................................................................2611.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGACAGTCAGCACACCA............................................................................................................................................................................2111.0011000000
................................................ATGGTAATGTTCCACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACAGTCAGCACACCA............................................................................................................................................................................1911.0010000010
........................................................................................................................................................GCAGCAGCAACATCTAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..........................................................................................................................................................................GACACAGCAGC------AG---------------------------------------------------CAG------------------------------------------------CAGC----------------------------.............................................................................................................................................................................................................................................................................................................................................................2030.3310000010
............................................................................................................................................................................CACAGCAGC------AG---------------------------------------------------CAG------------------------------------------------CAGC----------------------------AGC-------------------------------------------------------------------------------------------------------------AGCAAC.......................................................................................................................................................................................................................................2760.1710100000
............................................................................................................................................................................CACAGCAGC------AG---------------------------------------------------CAG------------------------------------------------CAGC----------------------------A............................................................................................................................................................................................................................................................................................................................................................19200.0510000010
droYak3
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AG---------------------------------------------------CAG----------------------------------------------------------------------CAACAGCAGCAGCAGCAGC-------------------------------------------------------------------------------------------------------AGCAACAACAGACAGC------------------------ACTCAATGAGACAGTCAGCACACCGCACACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGCTACCGCCCACAGTCGCTCCTCTGTCC------TCCAGTTCATCCATC---ACACCACAACCA---------CC------AA-----------------------------------GTACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................CTAGAGACACAGCAGC------AG---------------------------------------------------CAG----------------------------------------------------------------------CAAC...................................................................................................................................................................................................................................................................................................................................................................2516.00600000000006
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------ACTCAATGAGACAGTCAG...................................................................................................................................................................................2111.00101000000000
.GATGTGACAACGGCCACGCCGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........ACGGCCACGCCGGATCTCTATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCTCTTGCCCATTCTG................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATC--------CAAGCCTCTTGCCCATTCT.................................................................................................................................2611.00101000000000
.................................................................................................................................................................ACACCTAGAGACACAGCAGC------AG---------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGACAGC------------------------ACTCAATGAGACAGTC.....................................................................................................................................................................................2911.00100100000000
...............................................................AGCATGTCATACTGC----------------------------------------------AGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGTCAGCACACCGCACACC......................................................................................................................................................................2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATGAGACAGTCAGCACACCGCA..........................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTACCGCCCACAGTC...........................................................................................................2011.00101000000000
.......ACAACGGCCACGCCGGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGC------------------------ACTCAATGAGACAGTC.....................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................GAGACACAGCAGC------AG---------------------------------------------------CAG----------------------------------------------------------------------CAACAGCA...............................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------CAAGCCTCTTGCCCATTCT.................................................................................................................................2011.00101000000000
.............................................................................................................................................................AGCAACACCTAGAGACACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCGCACACCGATACTAATC--------....................................................................................................................................................2211.00101000000000
...................................................................................................................................................................................GC------AG---------------------------------------------------CAG----------------------------------------------------------------------CAACAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEug1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------------------------------AGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAG----------------------------C-------------------------------------------------------------------------------------------------------------AACAACAACAGACTGC------------------------ACTACATGATACAGTCAGCACACCACCAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTCCAG------TCCAACTCATCCACA---ACACCGCCACTA---------CC------AC-----------------------------------GACCTSizeHit CountTotal NormTotal
No Reads
droBia1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AG---------------------------------------------------CAA------------------------------------------CAGCAGCAGCTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCAACAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TCCAATTCATCCACAACAACAACACCACCA---------CC------AA-----------------------------------GTTCTSizeHit CountTotal NormTotal
No Reads
droTak1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATTCTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAACACCTAGAGACACAGCAGC------AGCAGCAGCAGCA------------------------------------------------------------------------------GCAGCAGCAGCAGCAGCTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCAACAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TCCAATTCATCCACC-----AACACCACAA-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAGCACCTAGAGACACAGCAGC------AG---------------------------------------------------CAG------------------------------------------CAACAACAACTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAACAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCACCAACCGATACTAATC--------CAAGCATCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TTCAACTCATCCAC------ACCACCACCACCG------CCACAACCAA-----------------------------------GTTCTSizeHit CountTotal NormTotal
No Reads
droRho1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGCTGCAGCAGCAACACATAGAGACACAGCAGC------AG---------------------------------------------------CAG----------------------------------------------------------------------CTACAACAGCAGC-------------------------------------------------------------------------------------------------------------AGCAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACCAACAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCC------TCCAATTCATCCAC------ACCACCACCA---------CC------AA-----------------------------------GTTCTSizeHit CountTotal NormTotal
No Reads
droFic1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCTGCACATGCTGCAGTTGCAGCAGCAGCACCTAGAGACACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------CTACAACAGCAGC-------------------------------------------------------------------------------------------------------------AGCAGCAACAGACAGC------------------------ACTCCATGAGACAGTCAGCACACAAGCAACCGATACTAATC--------CAAGCCTCTTGCCCATTCTGTCATTGTTACCGCCCACAGTCGCTCCACTGTCCACTGTCTCCAACTCATCCAC---------ACCACCA---------CC------AA-----------------------------------GCTCTSizeHit CountTotal NormTotal
No Reads
droKik1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCACAGCATGTCATACTGC----------------------------------------------AGCAGCAGCAGCT------------------------------AGGGATGCAGCAGC------AG---------------------------------------------------CAG------------------------------------------CAGCAG----------------------------------C-------------------------------------------------------------------------------------------------------------AGCTGAATCTGACCAC------------------------ACTCCATGATACA------------CCGCCCGATACTAATC--------CAAGCCTATCGCCCATTCTGTCATTGTTACCGCCCGCAGTTGTCCCGCTGT---------CCAATTCATCCAC------ACCACCA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCTCAGCATATCATACTCCTCCAGCAGCAACAACATCAACAAC----------------------AACAGCAACAGTTGCA---GCTGCAGCTGCAACAGCAGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------CT-------------------------------------------------------------------------------------------------------ACAAC------------AACAACAACAGACAACACCTACTACTCGTAGCATAAGTGAACTCAATGAGACAGTCAGCCCACCTACAACCGATACTAATT--------CAAGCCTATTACCCATTCTATCATTGTTACCGCCCACAGTTGTTCCACTT---------TCCAATTCATCCAC------ACCACCACCA---------TC------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAACAACAGACAACACC..........................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------AACAACAACAGACAACACCTAC.......................................................................................................................................................................................................................2611.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCATCCAC------ACCACCACC............................................................2111.001100000
....................CGGATCTCTATAGCAA-AA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGCCCACCTACAACC......................................................................................................................................................................1911.001100000
....................................................................ATCATACTCCTCCAGCAGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................GCAGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------C......................................................................................................................................................................................................................................................................................................................................................................23200.153030000
................................................................................................................................................................AGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GC............................................................................................................................................................................................................................................................................................................................................................................................18200.102020000
...............................................................................................................................................................CAGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCA...........................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
...................................................................................................................................................................A---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------CT-------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................................................................................19180.061100000
................................................................................................................................................................AGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------C......................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................AGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCA...........................................................................................................................................................................................................................................................................................................................................................................................19200.051000100
............................................................................................................................................................CAGCAGCA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..................................................................................................................................................................CA---------ACAGCAGC------AG---------------------------------------------------CA------------------------------------------------GCAG-------------------C......................................................................................................................................................................................................................................................................................................................................................................19200.051001000
droBip1
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCTCAGCATATCATACTCCTCCAGCAGCAACAACATCAACAAC----------------------A---ACA------------GCA---------------------ACAGTTGCAGCTGC------AG---------------------------------------------------CAG------------------------------------------CAACAGCAGCTA----------------------------C-------------------------------------------------------------------------------------------------------------AACAACAACAGACAACACCTACTTCTTGTAGCATAAGTGAACTCAATGAGACAGTCAGCCCACCTACAAACGATACTAATT--------CAAGCCTATTGCCCATTCTATCATTGTTACCGCCCACAGTTGTTCCATTAT---------CCAATTCATCCAC------ACCACCACCA---------TC------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCCCAGCATATCATACTCC----------------------------------------------AGCAGCAGCAGCTGC------TGCA---GCAACAGCAATACCAACAACATCAGCAGCAGCAAC------A---------------------------------------------------------------------------------------------GTTGCAG-------------------CTACAGCTGCAACA----------------------------------------------------GCAGCAGCCACTAGCACTCGCACAAGCACAGCC------ACAAC------CACAAACACAAATACAG---------ACCACTCGTAGTCATAGTGAACTAAATGAGACAGCATCCAATACACCCTCCAATACTAATC--------CCAGCCTCTTGCCCATCTCATCATTGTTACCGCCCACAGTTGTTCCAACA---------TCCAATACCTCCACA---CCACCACCACTA---------CC------AG-----------------------------------CACCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....TGACAACGGCCACGCCGGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTAAATGAGACAGCATCC..................................................................................................................................................................................2311.0010010000000
...................................................................................................................................................................................................................................................................................................................................AACA----------------------------------------------------GCAGCAGCCACTAGCAC....................................................................................................................................................................................................................................................................................2111.0010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAGCACTCGCACAAGCACAGCC------ACA...........................................................................................................................................................................................................................................................2511.0010100000000
..........ACGGCCACGCCGGATCTCTATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAATC--------CCAGCCTCTTGCC.......................................................................................................................................2111.0010100000000
droPer2
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGCAATGGTAATGTTCCCCAGCATATCATACTCC----------------------------------------------AGCAGCAGCAGCTGC------TGCA---CCAACAGCAATACCAACAACATCAGCAGCAGCAAC------A---------------------------------------------------------------------------------------------GTTGCAG-------------------CTACAGCTGCAACA----------------------------------------------------GCAGCAGCCACTAGCACTCGCACAAGCACAGCCACAGCCACAACCACAACCACAAACACAAATACAG---------ACCACTCGTAGTCATAGTGAACTAAATGAGACAGCATCCAATACACCCTCCAATACTAATC--------CCAGCCTCTTGCCCATCTCATCATTGTTACCGCCCACAGTTGTTCCAACA---------TCCAATACCTCCACA---CCACCACCACTA---------CC------AG-----------------------------------CACCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG---------ACCACTCGTAGTCATAGTG......................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAGTGAACTAAATGAGACAGCATC...................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAGTGAACTAAATGG............................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTGAACTAAATGAGACAGC......................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................CAGCAGCAGCAAC------A---------------------------------------------------------------------------------------------GTTGCA...........................................................................................................................................................................................................................................................................................................................................................................................20130.081001000
droWil2
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATATGCAGTAATGGTAATGTTCCACAACA------GCTAC----------------------------------------------AACAACAGCAACTGCTTTTGCTACAACAGCAACAG------------------AAGC------TG---------CA------------------------------------------------------------------------------ACTACAATTACAGTCGCAAGAACAAGCACAGACAGCT-------------------------------------------------------------------------------------------------------ACAAC---------------AACA----------------------------------------AAAACAACTACAACTCCAACTCCAAATACTAATT--------CAATCCTTATGCCCATTTCATC---------ACCTACAGTTGATCCATCACCC------ATCATCACATCC------------------------------------A-----------------------------------ATACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................CAACAG------------------AAGC------TG---------CA------------------------------------------------------------------------------ACTACAAT..................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..............................................TAATGGTAATGTTCCACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGCCCATTTCATC---------ACCTACA..............................................................................................................2411.00101000
...................................A-AATATGCAGTAATGGTAATGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATC---------ACCTACAGTTGATCCATCAC.................................................................................................2511.00101000
..............................................................................................................................................TGCTACAACAGCAACAG------------------AAGC------TG---------CA------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
droVir3
GCA----ACAACAGGCACAACAG----CAACAGCAG-CGCGAGCAACAG----AATATTATACAGCAAATTGTGGTGCA------------------ACAA-------ACAGCCACACAACAGCACCAGCAGCAGCAGCACC------------ATCAGCAACAGCAGCAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------GCAGCAA-------------------CAACAGGCACAGCA----------------------------------------------------GCAGCAGCA------------------------------------------------GCA----------------------------------------------GCAGCAGGCGCAACAGCAACAATTGC--AGC--------TAAGCAGCGTGCCCTTCTC------------------AGT---------------------TAGCTCAACAAC------AACACC--CGCTGGCATTGCCACCT-CGAGCGCATTGCAGGCCGCATTGTCTGCCTCTGGTGCTGTCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................AGCAGCAGCAGCACC------------ATCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGCATTGCCACCT-CGAGCG.....................................2311.001000000000000001000000000000000000000000000000000000000000000000
......................................................ATATTATACAGCAAATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.....................................CGCGAGCAACAG----AATATTATACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACAGGCACAGCA----------------------------------------------------GCAGCAGCA------------------------------------------------............................................................................................................................................................................................................................................2120.501000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------------------------------------GCA----------------------------------------------GCAGCAGGCGCAACA............................................................................................................................................................................2130.331000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................AGCAGC------A---------------------------------------------------------------------------------------------GCAGCAA-------------------CAACAGGC...............................................................................................................................................................................................................................................................................................................................................................2270.141001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GCA----------------------------------------------------GCAGCAGCA------------------------------------------------GCA----------------------------------------------GCAGCAGGCGC................................................................................................................................................................................26120.081000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................................TCAGCAACAGCAGCAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................GCAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------GCAGCAA-------------------.......................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AGCAACAGCAGCAACAACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................CAACAGCACCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GCAGCAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------GC...............................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CAGCAGCAACAACAGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................GCAGCAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------GCA..............................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................ACAGCACCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................CAGCAACAACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------G................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ACAGCAGCAGCAGC------A---------------------------------------------------------------------------------------------GCAGCAA-------------------CA.....................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................GCAGCAGCAGC------A---------------------------------------------------------------------------------------------GCAGCAA-------------------CAAC...................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................AGCAACAACAGCAGCAGCAGC------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------------------------------------------GCA----------------------------------------------GCAGCAGGCGC................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
GGATGTGACATCGGGCACGCCAGATCTATACAGCAAAAATTTGCAGCAATGGTAATATTATGCACCA---------------------ACTACAACAACAA------C----------------A---ACAGCACCAGCTGTTGCT------TGCA---------------CAGCAGCAGCAGCAGA------TGCTGCAGCTGCAGATGCAACATGAGAC------------------------------------ACAACTACAGCTTCAGCAACAACAGCAGCAGCAGCAG----------------------------------------------------TCAAATATCATTAGTCA-------------------------------------------------------------------------------------------------------------------TCGTCAT------ACAACGACAACAACAGATAGTGATATAACAAATGAAGCAT-TTGCAAA---GGCAACTGCAACAG-CCACAGTAGCAGCAGCAGC----------A--GCAGCAACA---ACACCAACAATA---------CC------AG-----------------------------------CAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG-CCACAGTAGCAGCAGC...................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG-CCACAGTAGCAGCAGCAGC----------A--G..................................................................................2811.001100000
........................................................................................................................................................................................AGA------TGCTGCAGCTGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
...............................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................19200.102000200
.................................................................CA---------------------ACTACAACAACAA------C----------------A---ACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC----------A--GCAGCAACA---ACA....................................................................25200.051100000
.............................................................................................................................................................................................................................................................................TCAGCAACAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTAGCAGCAGCAGC----------A--GCA................................................................................21200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAGCAGC----------A--GCAGCAAC...........................................................................22200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC----------A--GCAGCAACA---AC.....................................................................23200.051000010
....................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAG----------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................................19200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAGCAGC----------A--GCAGCAACA---.......................................................................23200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC----------A--GCAGCAACA---ACACC..................................................................20200.051000010
droGri2
GGATGTGACAACGGCCACGCCGGATCTCTATAGCAA-AATTTGCAGCAACGGTAATGTTACACTCCA---------------------ACAACATCAACAACAACAAC----------------A---ACAGCAGCAGCTGTTGCTGCA------ACAACAGCA---------TCTGCTGC------------------AGCTGCAAATGCAACATGAAACACAACAACAACTACAACAGCTACAGCTACAACAGCAACAACAACAACAACAGCA------------ACAGCAG-------------------CTACAGCAGCAGCAGCAGCAGCAAACACAGCAAACAAATCTCATTAGTCATAGTCATCATCAAACAGAAGCAGCT------------------------GTTGC------------------AACAGACACAGACACA----------------------GAAAC---AGA---------------AACAGCAAATACTAATT--------CTTCCTTATTACCCATCTCATCATTGTTACCACCCACAGTTGCCTCATTGTCC---------ATCACACCCAC------ACCAACACCAACA------C--------------------------------------------CAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................GCAGCT------------------------GTTGC------------------AACAGACAC....................................................................................................................................................................................................................................2011.00110
...............................................................................................................................................................................................................................AACAACAACTACAACAGCTACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50110
................................................................CCA---------------------ACAACATCAACAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.09110

Generated: 05/19/2015 at 02:23 AM