ID:

dsi_30153

 Coordinate:

x:7976753-7976902 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.5 -12.5

Flybase annnotation

CDS [x_7976903_7977264_+]; exon [x_7976903_7977264_+]; intron [x_7975343_7976902_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATTACTTATATGATATATAGCAGTAGTAGCCATGTACGAGAGAGAGACCCGAGCACCTAATCCGGCGACCCACTTGGAACACACCTAATCTACGATCTGCGCATTGTTCCCCAAAACTAACCCGCATCTTGCAATCCTCTTCTTTCGTTTCGTTTCGTTTCTTTCCCTCACAAAAAAATAATCCGATCGAAAACCCAGATCCCGACAATGAGAAATTGTCGGGCCTACCACATTCGACAACCGGTTCA
**************************************************(((((...................)))))...............(((..((((..(((((......))).))..))))..)))...........(((((..(((....((((.(((.......))).))))....))).)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................................................TGAGAAATTGTCGGGCCTACCACATT.............. 26 0 1 2.00 2 0 0 1 0 0 1 0 0
................................................................................................................................................................................................................AATGAGAAATTGTCGGGCCTACCACA................ 26 0 1 2.00 2 0 1 0 0 1 0 0 0
.............................................................ATGCGACGACCAACTTGGAAC........................................................................................................................................................................ 21 3 4 1.50 6 5 0 0 0 0 0 1 0
.........................................................................................ATCTACGATCTGCGCATT............................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................GACCCGAGCACCTAATCCGGC...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................CAATGAGAAATTGTCGGGCCTACCAC................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................AATGAGAAATTGTCGGGCC....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CCGACAGTGAGAAATT............................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................TTTCGTTTGTTTCTCTGACAAA.......................................................................... 22 3 7 0.14 1 1 0 0 0 0 0 0 0
................................................................CGACGACCAACTTGGAAC........................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 1 0
.......................................GAAAGAGTGACCCGAG................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
.........................................................................ACTTGGAACACAACT.................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTTAATGAATATACTATATATCGTCATCATCGGTACATGCTCTCTCTCTGGGCTCGTGGATTAGGCCGCTGGGTGAACCTTGTGTGGATTAGATGCTAGACGCGTAACAAGGGGTTTTGATTGGGCGTAGAACGTTAGGAGAAGAAAGCAAAGCAAAGCAAAGAAAGGGAGTGTTTTTTTATTAGGCTAGCTTTTGGGTCTAGGGCTGTTACTCTTTAACAGCCCGGATGGTGTAAGCTGTTGGCCAAGT
**************************************************(((((...................)))))...............(((..((((..(((((......))).))..))))..)))...........(((((..(((....((((.(((.......))).))))....))).)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
..............................................................................................................................................................................TTTTTTATTAGGCTA............................................................. 15 0 2 284.00 568 556 2 8 2 0 0 0
.............................................................................................................................................................................TTTTTTTATTAGGCTA............................................................. 16 0 2 176.50 353 349 2 2 0 0 0 0
.............................................................................................................................................................................TTTTTTTATTAGGCT.............................................................. 15 0 3 58.00 174 119 54 1 0 0 0 0
..........................................................................................AGATGCTAGACGCGATACAGGGG......................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0
..............................................................................................................................................................................TTTTTTATTAGGCTAG............................................................ 16 0 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TTTTTATTAGGCTAG............................................................ 15 0 2 0.50 1 0 1 0 0 0 0 0
............................................................................................................................................................................ATTTTTTTATTAGGCTA............................................................. 17 1 5 0.40 2 2 0 0 0 0 0 0
......................................................................................................................................TTAGGAGAAGCAAACAAAG................................................................................................. 19 2 4 0.25 1 0 0 0 1 0 0 0
.......................................................................................................................................TAGCAGAAGAAGGCAAAGTAA.............................................................................................. 21 3 12 0.17 2 0 0 0 2 0 0 0
.............................................................................................................................................................................ATTTTTTATTAGGCTA............................................................. 16 1 18 0.17 3 3 0 0 0 0 0 0
.....................................TGGTCTCTCTCCGGGC..................................................................................................................................................................................................... 16 2 15 0.13 2 0 0 0 2 0 0 0
.........................................................................................................................................................CCAATCAAAGAAAGGGAG............................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0
..............................................................................................................GGTGATTTGATTGGGCG........................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0
..............................................................TGGCCCCTGGATGAACCTT......................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 1 0
.............................................................................................................................................................................TTTTATTATTAGGCTA............................................................. 16 1 19 0.05 1 1 0 0 0 0 0 0
................................................................ACCGCTGGCTGAACCCTGT....................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................................TTTTTTTATTAGACTA............................................................. 16 1 19 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TTTTTTATTAGGCTC............................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................................AATTTTTTTATTAGGCTA............................................................. 18 2 20 0.05 1 0 0 1 0 0 0 0
.................................................................................TTGTGGATTAGACGCT......................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:7976703-7976952 + dsi_30153 CAATTACT--TATAT--G--AT------AT--ATAGCAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------CACCTAATCTACGATCTGC---GCATTGTTC------CCC------------------------------------------------------AA----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTC--------------------GTTTCGT-TTCGTTT-----CTT-TCCCTC--------ACAAAAAA--AT---A------ATCCGA------TCG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droSec2 scaffold_35:255343-255593 + CAATTACT--TATAT--G--AT------AT--ATAGAAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------CACCTAATCTACGATCTGC---GCCTTGTTT------CCC------------------------------------------------------AA----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTC--------------------GTTTCGT-TTCGTTT-----CTT-CCCCTC--------ACAAAAAAA-AT---A------ATCCGA------TCG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
dm3 chrX:8406177-8406435 + CAATTATT--TATAT--G--AT------AT--ATAAAAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------CATCTAATCTACGATCTGC---GCCTTGATC------CCC------------------------------------------------------AA----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTCGT----------TTCGTTTCGTTTCGT-TTCGTTT-----CTT-TCCCCCG-T-----GCGA-----AAT---A------ATCCGA------TTG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droEre2 scaffold_4690:6706505-6706767 - CAATTATT--TATAT--GGTACATATGTAT--ATAGAAGTAG-----------TT-G------------CCATGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT-TGGA----------------------------------ACA--------------------------------------------------------CATCTAATCT-TGATCTGC---GCCTTGATC------TCC-------------------------------------------------------A----AACTAACCC-GCATCTTGCAATCCT-CTTCTCTCGT----------TTCTTTTCGTTTCGT-TTCGTTT-----CTT-CCCCC---------ACAA-----AAC---A------ATCCGA------TCG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droYak3 X:12907579-12907866 - dya_1412 CAATTATT--ATTAT--G--AT------ATATATAGATGTAG-----------TTGCCATGCTAGCTTGCCATGTTTGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGAACAC--------------------------------A--------------------------------------------------------CACCTAATCT-CGAACTGC---GCCTTGATA------TCC-------------------------------------------------------A----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTCGTTTCGTTTCGTTTCTTTTCGTTCCGT-TTCGTTT-----CTT-CCCCCA--------ACGAATAAA--CAAAA------CACCGA------TCG-----------------------------------AAAAAACAGATC---CCGACAATGAGAAATTGTCGGGCCTGC---CACATTCGACAACCGGTTCA
droEug1 scf7180000408744:20640-20891 + TACTTA-----------------------------GATATAGTAC---CGTACCTAC------------CCATGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CTGGCTAGCCACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGATCTTT---GCCTTGATC------CCC---------------------CT----------TCCCCAAA-GCAAATTA-AACAA----AACTAACCC-GCATCTTGCAACCCA-TTTCTTT-------------------------------CGTTTCTTT-TTA-CCCCACA-------AAAAAAAAC--AAA--A-----ACCA-A----AAAA-------------------------------------TTAACCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droBia1 scf7180000302421:591392-591603 - CACATA-----------------------------GACATAG-----TCGCAGTTAC------------CCGTGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CAGGCGACTAACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGATCTGC---GCCTTGAC-------CCC-------------------------------------------------------G----AACTAACCC-GCATCTTGCAACCCT-CTTCT--------------------------------TTGTTT-----CTT-CCCCCC--------G--A------AT---A------A-CCGA------CCG------------------------------------AAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droTak1 scf7180000415812:6339-6571 + CTTAAA---------------T------AT--A--G------TATAGTCGTAGTT-C------------CCATGGATGAG-------AGAGAGTGACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGAACTGCTGTGCCTTGAAC------CCC-------------------------------------------------------------ACTAACCC-GCATCTTGCAACCCT-CTTCT-------------------------------TTCGTTT-----CTT-CCCCTCA-------ACAAAAAAA--AAAAACC----ATCCGA------TCG-----------------------------------CAAATCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droEle1 scf7180000491006:7351-7577 + TATATACA--TACAT--A--GT--ATGAAC--ATAGAAGTAG------CT---TA-G------------ACATGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGAGCCACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGATCTGT---GCCT-GATC------CCC------------------------------------------------------------AACTAACCC-GCATCTTGCAACCCC---TCTTT-------------------------C--TTTCGTTT-----CTT-CCCCA------------A-----AAC-----------TCAAA------CTC-----------------------------------AAATCCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droFic1 scf7180000453549:161097-161310 - CACAAACT--TACATACG--ATATATGCAT--ATAGATTTAG-----------TTAC------------CAAAGTATGAG-------AGAGA--GACCCGAGC-ACCTT---AT-----CCGGCACCTTATCC--GGA--------------------------------------------------------------------------------------------------------------------------TC-------CC-------------------------------------------------------A----AACTAACCC-GCATCTTGCAATCCCTTTTC-------------------------------TTTCGTTT-----CTT-CCCATT--------ACAAAAAAA--A--------------AA------ACC-----------------------------------AAATCCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACTACCGGTTCA
droKik1 scf7180000302704:152847-153054 - -----------------------------------------------------------------------ATGTAAGAG-------AGAGA--GATCCGAGC-ACCTA---ATCCAATCCGGAGGCCCACTTGTGGA----------------------------------ACT--------------------------------------------------------C--------T-TAATCTGT---GCCC-GATC------C-C-------------------------------------------------------AAACTAACTAACCC-GCATCGTGCAACCCC-TTTTTCT-------------------------------CGTTTCGTTTCTT-CCGAAT--------ATCCCCAC------------------AA------TTGCATC-------------------------------AAACCCCAGATC---CTGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACTGGTTCA
droAna3 scaffold_13248:2506890-2507199 - TTTTCTTGCTTATAT--T--T-------------------------------------------------TTTGGATGAGAGAGGAG-GAGA--GACTCCAACCAC--A-------------GCCCCCCA-----AGCACACCACCATC--ACAGTGAACTGTGAACTTTGAACTCTCCACTGTACTCCAATGTACTCTAATGTAC--TGTGTACTCTGTGTG-ATTTTAAT------------GTCTGT---GCCT-GATCCTTGACCCT------------------------------------------------------TT----GACTAACCC-GCATCTTGGTATCCCGTTT-----------------------------C--TTTTGTTT-----CTC-CCCCCCC-T-----CCAAAAAC--ACCATACTCTTGTCCCGA------TCT-------------------------------------CATCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
droBip1 scf7180000396429:464701-464982 + ACTTTTCT--TGCTT--T--TT------T-----------------------------------------TTTGGATGAGAGAGGAG-GAGA--GACTCCGACCACCCA---C------CC----ACCCCCCC--AGCACACCACCAACACACAGTGAACTGTGAACTTTGAACTCT-------------------------GTACCGTGTGTACTCTGTGTGTACTTTAAT------------GTCTGT---GCCT-GATCCTTGACCCT-------------------------------------------------------T----GACTAACCC-GCATCTTGCTATCCCGTTT-----------------------------C--TTTTGTTTCTC---CT-CCCCC----------CCGA----TATTTTG------TCCC----------G-----------------------------------ACAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCA
dp5 XL_group1e:3469270-3469526 + TGA----------------------------------------------------------------------------GACATGAGTGAGA--GACCC-AGC-AACCA----C-----CCACCCACCCACCA------CAC------------------------------GCA--------------------------------------------------------C--------T-CGATCTT---------------TGATCCCTTGCAACAACCCACGACCACCCCTCTGAAAATATACCCAAAAA-A---TATTTATG----TACTAACCCTGCATCTTGCCGTGCT-CTCCCCTC---------------------------TTTC-TTT-----TTTCCCCACT-CTACACCC-CA-----AACCATC------CCCCGACCATGCTCG-------------------------------------TAACCAGATC---CCGACAATGAGAAGTTGTCGGGCCTAC---CACATTCGACAACTGGTTCA
droPer2 scaffold_17:406473-406736 + TGA----------------------------------------------------------------------------GACATGAGTGAGA--GACCC-AGC-AACCATCCAC-----CCACCCACCCACCC--ACCACAC------------------------------GCA--------------------------------------------------------C--------T-CGATCTT---------------TGATCCCTTGCAACAACCCACACCCACCCCTCTGAAAATATCCCCAAA-A-A---TATTTATG----TACTAACCCTGCATCTTGCCGTGCT-CTCCCCTC---------------------------TTTC-TTT-----TTTCCCCTCT-CTACCCCCC-A-----AACCATA------CCCCGACCATGCTCG-------------------------------------TAACCAGATC---CCGACAATGAGAAGTTGTCGGGCCTAC---CACATTCGACAACTGGTTCA
droWil2 scf2_1100000004515:1136160-1136374 + CTCCTTTG--TGTCT--T--GT------AT--ATATC----------------TA-T------------CTATGTACCTG-------TGT----------------------------------------------GT----------------------------------ACA--------------------------------------------------------TATCTAAC-----------------------------TCT------------------------------------------------------AA----TACTAACCA-GCCATTTGCC------TTT-----------------------------T--GTTTGTTTCTCC-TTTCCCCTAT--------GCA--------------------T-----CACCTTTGTATCTCACACACCTACACCCACACACACACACACATACACTTAGACCACACAGACAATGAAAAATTGTCCGGCTTACCGCCACATTCAACAACTGGTTCA
droVir3 scaffold_12970:10981611-10981710 - ATCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTC--------------------TTCCCATTTCTGTTT-----CTT-CCACCC--------CCA-----------------------TA---------------------------------------------TTGCACAGACC---CCGACAATGAGAAGTTGTCCGGCCTTC---CCCATTCGACAACTGGTTCA
droMoj3 scaffold_6473:10368587-10368756 + CGAACACA--CATAC-----AC------AC--AGTGAAATTG-----------TA-G------------CTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCG----TACTAAC-T-GCATCTC--TACTCT-CTTTC-----------------------CCTAT--CTCTGTTT-----CTT-TCCACCA-------ACTGTCAAT--TGT--C-----ATCC-A------CGC-----------------------------------ACTGCACAGACC---CCGACAATGAGAAGTTGTCCGGCCTTC---CACATTCAACAACTGGTTCA
droGri2 scaffold_15203:2975604-2975780 - CACCTACA--TACACAC------------------------------------------------------------------------------------------------------------------------------ACCAAGATA----------------------------------------------------------------------------------------------CTG---------------TGAT----------------------------TGAAAATTTAGCT------A---GATTGTCA----TACTAAC-T-GCATTGTT---------TTCTTT--------------------CCCTAT--ATCTGTTT-----CTT-CCCCAC--------ATACCCAAA-AA---T------TCCCGC------TTG------------------------------------TTGCACAGACC---CCGACAATGAGAAGTTGTCCGGCCTTC---CCCATTCAACAACTGGTTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAATTACT--TATAT--G--AT------AT--ATAGCAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------CACCTAATCTACGATCTGC---GCATTGTTC------CCC------------------------------------------------------AA----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTC--------------------GTTTCGT-TTCGTTT-----CTT-TCCCTC--------ACAAAAAA--AT---A------ATCCGA------TCG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAATTGTCGGGCCTAC---CACATT..............2612.00200000010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAATTGTCGGGCCTAC---CACA................2612.00200000001100000000
.............................................................................................................................................................................................................................................ATCTACGATCTGC---GCATT..............................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..............................................................................................GACCCGAGC-ACCTA---AT-----CCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAATTGTCGGGCCTAC---CAC.................2611.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAATTGTCGGGCC..........................1911.00101000000000000000
droSec2
CAATTACT--TATAT--G--AT------AT--ATAGAAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------CACCTAATCTACGATCTGC---GCCTTGTTT------CCC------------------------------------------------------AA----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTC--------------------GTTTCGT-TTCGTTT-----CTT-CCCCTC--------ACAAAAAAA-AT---A------ATCCGA------TCG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................A-G------------CCATGTACGAG-------AGAGA--GACCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.....................................AGTAG-----------TA-G------------CCATGTACGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................GAAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
dm3
CAATTATT--TATAT--G--AT------AT--ATAAAAGTAG-----------TA-G------------CCATGTACGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------CATCTAATCTACGATCTGC---GCCTTGATC------CCC------------------------------------------------------AA----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTCGT----------TTCGTTTCGTTTCGT-TTCGTTT-----CTT-TCCCCCG-T-----GCGA-----AAT---A------ATCCGA------TTG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAATTGTCGGGC...........................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAATTGTCGGGCCTAC---CACATT..............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGCCTAC---CACATTCGACAACCGGTT..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---CCGACAATGAGAAATTG.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TAATCTACGATCTGC---GCCTTG.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TACGAG-------AGAGA--GACCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAATTGTCGGGCCTAC---CACA................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---CACATTCGACAACCGGTT..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAATTGTCGGGCCTAC---....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATC---CCGACAATGAGAAATTGTCGGGC...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAATTGTCGGGCCTAC---CACAT...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAATTGTCGGGCCTAC---CACATTC.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AGAGA--GACCCGAGC-ACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAATTGTCGGGCCTAC---CACA................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................TA---AT-----CCGGCGACCCACGA--.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GT----------TTCGTTTCGTTTCGT-TTCGTT.................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTTCGT----------TTCGTTTCGTTTCGT-TTCG...................................................................................................................................................................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................T----------TTCGTTTCGTTTCGT-TTCGT..................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTTCGT----------TTCGTTTCGTTTCGT-.......................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGT----------TTCGTTTCGTTTCGT-T......................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CGTTTCGTTTCGT-TTCGTT.................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CGTTTCGTTTCGT-TTCGT..................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGT----------TTCGTTTCGTTTCGT-.......................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAATTATT--TATAT--GGTACATATGTAT--ATAGAAGTAG-----------TT-G------------CCATGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT-TGGA----------------------------------ACA--------------------------------------------------------CATCTAATCT-TGATCTGC---GCCTTGATC------TCC-------------------------------------------------------A----AACTAACCC-GCATCTTGCAATCCT-CTTCTCTCGT----------TTCTTTTCGTTTCGT-TTCGTTT-----CTT-CCCCC---------ACAA-----AAC---A------ATCCGA------TCG-----------------------------------AAAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAC---A------ATCCGA------TCG-----------------------------------AAAACCCAG........................................................2311.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---CACATTCGACAACCGGT...2011.0010000010
........................ATGTAT--ATAGAAGTAG-----------TT-G------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAATTGTCGGGCCTAC---CACA................2611.0010000010
......................................GTAG-----------TT-G------------CCATGTATGAG-------AGAGA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAATTGTCGGGC...........................1911.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAATTGTCGGGCCTAC---CAC.................2411.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGAGAAATTGTCGGGCCTAC---CAC.................2811.0011000000
droYak3
CAATTATT--ATTAT--G--AT------ATATATAGATGTAG-----------TTGCCATGCTAGCTTGCCATGTTTGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGAACAC--------------------------------A--------------------------------------------------------CACCTAATCT-CGAACTGC---GCCTTGATA------TCC-------------------------------------------------------A----AACTAACCC-GCATCTTGCAATCCT-CTTCTTTCGTTTCGTTTCGTTTCTTTTCGTTCCGT-TTCGTTT-----CTT-CCCCCA--------ACGAATAAA--CAAAA------CACCGA------TCG-----------------------------------AAAAAACAGATC---CCGACAATGAGAAATTGTCGGGCCTGC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CACCGA------TCG-----------------------------------AAAAAACAG........................................................2014.00430000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CACCGA------TCG-----------------------------------AAAAAACAG........................................................1912.00220000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------CACCGA------TCG-----------------------------------AAAAAACA.........................................................2012.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAATTGTCGGGCCTGC---CACATTC.............2811.00100010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CACCGA------TCG-----------------------------------AAAAAACAGATC---CCGACA............................................2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGATC---CCGACAATGAGAAATT..................................2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGCCTGC---CACATTC.............1811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................ATCTTGCAATCCT-CTTCTTTCGT.................................................................................................................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAATTGTCGGGCCTGC---CACATT..............2811.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAATTGTCGGGCCTGC---....................1911.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--CAAAA------CACCGA------TCG-----------------------------------AAAAAACA.........................................................2611.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAAAA------CACCGA------TCG-----------------------------------AAAAAACAG........................................................2511.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGC---CACATTCGACAACCGGTT..2511.00100100000000
..................................................................TTGCCATGTTTGAG-------AGAGA--GACCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEug1
TACTTA-----------------------------GATATAGTAC---CGTACCTAC------------CCATGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CTGGCTAGCCACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGATCTTT---GCCTTGATC------CCC---------------------CT----------TCCCCAAA-GCAAATTA-AACAA----AACTAACCC-GCATCTTGCAACCCA-TTTCTTT-------------------------------CGTTTCTTT-TTA-CCCCACA-------AAAAAAAAC--AAA--A-----ACCA-A----AAAA-------------------------------------TTAACCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotal
No Reads
droBia1
CACATA-----------------------------GACATAG-----TCGCAGTTAC------------CCGTGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CAGGCGACTAACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGATCTGC---GCCTTGAC-------CCC-------------------------------------------------------G----AACTAACCC-GCATCTTGCAACCCT-CTTCT--------------------------------TTGTTT-----CTT-CCCCCC--------G--A------AT---A------A-CCGA------CCG------------------------------------AAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotal
No Reads
droTak1
CTTAAA---------------T------AT--A--G------TATAGTCGTAGTT-C------------CCATGGATGAG-------AGAGAGTGACCCGAGC-ACCTA---AT-----CCGGCGACCCACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGAACTGCTGTGCCTTGAAC------CCC-------------------------------------------------------------ACTAACCC-GCATCTTGCAACCCT-CTTCT-------------------------------TTCGTTT-----CTT-CCCCTCA-------ACAAAAAAA--AAAAACC----ATCCGA------TCG-----------------------------------CAAATCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotal
No Reads
droEle1
TATATACA--TACAT--A--GT--ATGAAC--ATAGAAGTAG------CT---TA-G------------ACATGTATGAG-------AGAGA--GACCCGAGC-ACCTA---AT-----CCGGCGAGCCACTT--GGA----------------------------------ACA--------------------------------------------------------C--------T-TGATCTGT---GCCT-GATC------CCC------------------------------------------------------------AACTAACCC-GCATCTTGCAACCCC---TCTTT-------------------------C--TTTCGTTT-----CTT-CCCCA------------A-----AAC-----------TCAAA------CTC-----------------------------------AAATCCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotal
No Reads
droFic1
CACAAACT--TACATACG--ATATATGCAT--ATAGATTTAG-----------TTAC------------CAAAGTATGAG-------AGAGA--GACCCGAGC-ACCTT---AT-----CCGGCACCTTATCC--GGA--------------------------------------------------------------------------------------------------------------------------TC-------CC-------------------------------------------------------A----AACTAACCC-GCATCTTGCAATCCCTTTTC-------------------------------TTTCGTTT-----CTT-CCCATT--------ACAAAAAAA--A--------------AA------ACC-----------------------------------AAATCCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACTACCGGTTCASizeHit CountTotal NormTotal
No Reads
droKik1
-----------------------------------------------------------------------ATGTAAGAG-------AGAGA--GATCCGAGC-ACCTA---ATCCAATCCGGAGGCCCACTTGTGGA----------------------------------ACT--------------------------------------------------------C--------T-TAATCTGT---GCCC-GATC------C-C-------------------------------------------------------AAACTAACTAACCC-GCATCGTGCAACCCC-TTTTTCT-------------------------------CGTTTCGTTTCTT-CCGAAT--------ATCCCCAC------------------AA------TTGCATC-------------------------------AAACCCCAGATC---CTGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACTGGTTCASizeHit CountTotal NormTotal
No Reads
droAna3
TTTTCTTGCTTATAT--T--T-------------------------------------------------TTTGGATGAGAGAGGAG-GAGA--GACTCCAACCAC--A-------------GCCCCCCA-----AGCACACCACCATC--ACAGTGAACTGTGAACTTTGAACTCTCCACTGTACTCCAATGTACTCTAATGTAC--TGTGTACTCTGTGTG-ATTTTAAT------------GTCTGT---GCCT-GATCCTTGACCCT------------------------------------------------------TT----GACTAACCC-GCATCTTGGTATCCCGTTT-----------------------------C--TTTTGTTT-----CTC-CCCCCCC-T-----CCAAAAAC--ACCATACTCTTGTCCCGA------TCT-------------------------------------CATCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTAC---CACATTCGACAACCGGT...2512.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC---CACATTCGACAACCGGTT..2212.002001010
........................................................................................................................................................................................................................................................GT---GCCT-GATCCTTGACCCT------------------------------------------------------TT----GACT.................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................GATCCTTGACCCT------------------------------------------------------TT----GACT.................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCCTAC---CACATTCGACAACCGGT...2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGTCGGGCCTAC---CA..................1911.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTAC---CACATTCGACAACC......2211.001010000
.............................................................................................................................................................AACTGTGAACTTTGAACTCTCCACT..........................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATTGTCGGGCCTAC---CACATT..............2411.001100000
.................T--T-------------------------------------------------TTTGGATGAGAGAGGAG-GAGA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................C--TTTTGTTT-----CTC-CCCCCCC-T-----CCA......................................................................................................................................2311.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGCCTAC---CACATTCGACAACCGGT...2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAC---CACATTCGACAACCGGTT..2411.001001000
...................................................................................................................................................................GAACTTTGAACTCTCCACT..........................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGGGCCTAC---CACATTCGACAACCGG....2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTAC---CACATTCGACAACCGGTC..2611.001010000
droBip1
ACTTTTCT--TGCTT--T--TT------T-----------------------------------------TTTGGATGAGAGAGGAG-GAGA--GACTCCGACCACCCA---C------CC----ACCCCCCC--AGCACACCACCAACACACAGTGAACTGTGAACTTTGAACTCT-------------------------GTACCGTGTGTACTCTGTGTGTACTTTAAT------------GTCTGT---GCCT-GATCCTTGACCCT-------------------------------------------------------T----GACTAACCC-GCATCTTGCTATCCCGTTT-----------------------------C--TTTTGTTTCTC---CT-CCCCC----------CCGA----TATTTTG------TCCC----------G-----------------------------------ACAACCCAGATC---CCGACAATGAGAAATTGTCGGGCCTAC---CACATTCGACAACCGGTTCASizeHit CountTotal NormTotal
No Reads
dp5
TGA----------------------------------------------------------------------------GACATGAGTGAGA--GACCC-AGC-AACCA----C-----CCACCCACCCACCA------CAC------------------------------GCA--------------------------------------------------------C--------T-CGATCTT---------------TGATCCCTTGCAACAACCCACGACCACCCCTCTGAAAATATACCCAAAAA-A---TATTTATG----TACTAACCCTGCATCTTGCCGTGCT-CTCCCCTC---------------------------TTTC-TTT-----TTTCCCCACT-CTACACCC-CA-----AACCATC------CCCCGACCATGCTCG-------------------------------------TAACCAGATC---CCGACAATGAGAAGTTGTCGGGCCTAC---CACATTCGACAACTGGTTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTAC---CACATTCGACAACTG.....2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCCTAC---CACATTCGACAACTG.....2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCGGGCCTAC---C...................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAGTTGTCGGGCCTAC---CACA................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGCCTAC---CACATTCGACAACT......2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCGGGCCTAC---CACATTC.............2811.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCGGGC...........................1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCGGGCCTAC---CACATT..............2711.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGTTGTCGGGCCTAC---CACA................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCCTAC---CACATTCGACA.........2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGTCGGGCCTAC---CAC.................2011.0010000100000
droPer2
TGA----------------------------------------------------------------------------GACATGAGTGAGA--GACCC-AGC-AACCATCCAC-----CCACCCACCCACCC--ACCACAC------------------------------GCA--------------------------------------------------------C--------T-CGATCTT---------------TGATCCCTTGCAACAACCCACACCCACCCCTCTGAAAATATCCCCAAA-A-A---TATTTATG----TACTAACCCTGCATCTTGCCGTGCT-CTCCCCTC---------------------------TTTC-TTT-----TTTCCCCTCT-CTACCCCCC-A-----AACCATA------CCCCGACCATGCTCG-------------------------------------TAACCAGATC---CCGACAATGAGAAGTTGTCGGGCCTAC---CACATTCGACAACTGGTTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC---CACATTCGACAACTG.....1915.005500000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCGGGCCTAC---CAC.................2415.005500000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCGGGCCTAC---CACATT..............2813.003300000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAGTTGTCGGGCCTAC---CAC.................2612.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCGGGCCTAC---CAC.................1812.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCGGGCCTAC---CACATTCGA...........2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCGGGCCTAC---CA..................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAGTTGTCGGGCC..........................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCGGGCCTAC---CACATTC.............2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTAC---CACATTCGACAACTG.....2311.001100000
droWil2
CTCCTTTG--TGTCT--T--GT------AT--ATATC----------------TA-T------------CTATGTACCTG-------TGT----------------------------------------------GT----------------------------------ACA--------------------------------------------------------TATCTAAC-----------------------------TCT------------------------------------------------------AA----TACTAACCA-GCCATTTGCC------TTT-----------------------------T--GTTTGTTTCTCC-TTTCCCCTAT--------GCA--------------------T-----CACCTTTGTATCTCACACACCTACACCCACACACACACACACATACACTTAGACCACACAGACAATGAAAAATTGTCCGGCTTACCGCCACATTCAACAACTGGTTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAAATTGTCCGGCTTACCGC....................2411.00100010
droVir3
ATCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTC--------------------TTCCCATTTCTGTTT-----CTT-CCACCC--------CCA-----------------------TA---------------------------------------------TTGCACAGACC---CCGACAATGAGAAGTTGTCCGGCCTTC---CCCATTCGACAACTGGTTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTC---CCCATTCGACAACTG.....2112.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCCGGCCT.........................2011.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGCCTTC---CCCATTCGACAACTG.....2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTC---CCCATTCGACAACTGGT...2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCCGGC...........................1811.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGCCTTC---CCCATTCGA...........2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC---CCGACAATGAGAAGTTGTCC..............................2311.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTC---CCCATTCGACAACTG.....2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCCGGCCTTC---CCC.................2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTC---CCCATTCGACAACTGGTT..2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACC---CCGACAATGAGAAGT...................................1911.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
CGAACACA--CATAC-----AC------AC--AGTGAAATTG-----------TA-G------------CTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCG----TACTAAC-T-GCATCTC--TACTCT-CTTTC-----------------------CCTAT--CTCTGTTT-----CTT-TCCACCA-------ACTGTCAAT--TGT--C-----ATCC-A------CGC-----------------------------------ACTGCACAGACC---CCGACAATGAGAAGTTGTCCGGCCTTC---CACATTCAACAACTGGTTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---CACATTCAACAACTGGTT..1912.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCCGGCCT.........................1912.002100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CACATTCAACAACTGGT...1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCCGGCCTT........................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCCGGCCTTC---CAC.................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................AAC-T-GCATCTC--TACTCT-CTTTC-----------------------CCT............................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGT--C-----ATCC-A------CGC-----------------------------------ACTGCACAG........................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAAGTTGTCCGGCCT.........................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCCGGCCTTC---C...................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGTTGTCCGGCCTT........................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CACATTCAACAACTGGTT..2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTT-TCCACCA-------ACTGTCAAT--TGT--C-----ATCC-A------C......................................................................................................2911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGAGAAGTTGTCCGGC...........................1911.001100000
droGri2
CACCTACA--TACACAC------------------------------------------------------------------------------------------------------------------------------ACCAAGATA----------------------------------------------------------------------------------------------CTG---------------TGAT----------------------------TGAAAATTTAGCT------A---GATTGTCA----TACTAAC-T-GCATTGTT---------TTCTTT--------------------CCCTAT--ATCTGTTT-----CTT-CCCCAC--------ATACCCAAA-AA---T------TCCCGC------TTG------------------------------------TTGCACAGACC---CCGACAATGAGAAGTTGTCCGGCCTTC---CCCATTCAACAACTGGTTCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:28 AM