ID:

dsi_30124

 Coordinate:

3r:4641389-4641452 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.0 -8.8 -8.8

Flybase annnotation

exon [3r_4641278_4641388_-]; CDS [3r_4641278_4641388_-]; CDS [3r_4641453_4641573_-]; exon [3r_4641453_4641573_-]; intron [3r_4641389_4641452_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
GGTCGAACAATCATGGCATTAACATGGCCATGAATTGGCCATCATTTGTGGTGAGTTTTCTGTTTTTACTGAAGCCCAGTGCGGCCGCTAATGGAACTTCCGCTTTGTTGACAGGAATATACGGAGGAGTTCCGTGACATTGCCAAGGGCAACAAATCAAAAGA
**************************************************.........(((((...((.((((((((..((....))...))).......))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
................................................................................................CTTCCGCTTTGTTGACAG.................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................ACAGGAATATACGGAGGAGTT................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
...............................GAATTGGCCATCATTTGTGGA................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................................GTTCCGTGACATTGCCAAGGGC.............. 22 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................GACATGAATATACGGACG..................................... 18 2 5 0.20 1 0 0 0 0 0 1 0
..............................................................................................................ACAGGATTATACGGA....................................... 15 1 6 0.17 1 0 0 0 0 1 0 0
......................................................CTTTTCTGTTTTTACTGAAT.......................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 1
.....................................................................................................................TATACGAAGGTGTTCCG.............................. 17 2 8 0.13 1 0 0 0 0 1 0 0
.............................................................................AATGAGGCCGCTCATGGAA.................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CCAGCTTGTTAGTACCGTAATTGTACCGGTACTTAACCGGTAGTAAACACCACTCAAAAGACAAAAATGACTTCGGGTCACGCCGGCGATTACCTTGAAGGCGAAACAACTGTCCTTATATGCCTCCTCAAGGCACTGTAACGGTTCCCGTTGTTTAGTTTTCT
**************************************************.........(((((...((.((((((((..((....))...))).......))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
.................................................................................................................CCATATCTGCCTCATCAAG................................ 19 3 7 0.14 1 0 1 0
...................................................................TGACTTCGGGTCACT.................................................................................. 15 1 9 0.11 1 1 0 0
....TCTGCTAGTACCGTAATTG............................................................................................................................................. 19 3 13 0.08 1 0 0 1
......................................................................CTTCGGGTCACCCCG............................................................................... 15 1 13 0.08 1 1 0 0

Generated: 04/24/2015 at 10:17 AM