dsi_30086

exon [3r_25357802_25358193_-]; CDS [3r_25357802_25358193_-]; intron [3r_25358194_25358739_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACATGAGCGACTTGGATATTAAGAGAAGCAATCAAATCCGACGGCGTGTTAAGTGAACCTGACCTAGCAAAGATTTCAGCATTTAGATACAGATACTTCAAAAGATATATCATTTACACGTGATGTTAATCATGATGTTAGAGTTAAACTTCTTTATAGACATATTACTTTTTTGTGTAATATCAAATAACGCTTTTCAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTCCATCACAAATACTC ************************************************(((((....((((((((((......................((((..((....))..)))).......((((((....)))))).)))))).))))....(((....))).(((((((........))))))).......))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
..............................................................................................................................................................................................................CTGTACGACTGGGTTCGCGAC.......................	21	0	1	1.00	1	1	0	0	0
......................................................................................................................................................TTTTTATAGATGTATTACTTTTTT............................................................................	24	3	2	0.50	1	0	1	0	0
..................................................................................................................................................................................................TTTCAGATCACCCTGTA.......................................	17	1	2	0.50	1	0	1	0	0
...................................................................................TAGATACTGATACTTC.......................................................................................................................................................	16	1	3	0.33	1	0	0	1	0
.......................................................................................................................................TGTAAGGGTTAAACTTCGT................................................................................................	19	3	18	0.06	1	0	0	0	1

TGTACTCGCTGAACCTATAATTCTCTTCGTTAGTTTAGGCTGCCGCACAATTCACTTGGACTGGATCGTTTCTAAAGTCGTAAATCTATGTCTATGAAGTTTTCTATATAGTAAATGTGCACTACAATTAGTACTACAATCTCAATTTGAAGAAATATCTGTATAATGAAAAAACACATTATAGTTTATTGCGAAAAGTCTTGTGGGACATGCTGACCCAAGCGCTGGTAGCTCAGGTAGTGTTTATGAG ************************************************(((((....((((((((((......................((((..((....))..)))).......((((((....)))))).)))))).))))....(((....))).(((((((........))))))).......))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	GSM343915 embryo
........................CTTCGTTAGTTTGGGC..................................................................................................................................................................................................................	16	1	2	0.50	1	0	1	0	0	0	0
....................................................................TAGCTAAACTCGTAAATCTAT.................................................................................................................................................................	21	3	5	0.40	2	2	0	0	0	0	0
...............................................................................................................................................................................................CGAAAAGTCTTGTCGGACA........................................	19	1	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................ATATCTGTATACTGAA................................................................................	16	1	9	0.33	3	3	0	0	0	0	0
.......................................................................................ATGTCTATGAGGTTGTCTGTA..............................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0	0
........................................................................................TGTCTGTGAGGTTGTCTATAT.............................................................................................................................................	21	3	5	0.20	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................TGGTATTTCAGCTAGTGTTT.....	20	3	12	0.17	2	0	0	1	0	1	0
..............................................................................................................................................................................................................................CGCTGGCAGCACAGGTGGTGT.......	21	3	7	0.14	1	0	0	0	1	0	0
................................................................................................................AAATGTGGACTAGAATTA........................................................................................................................	18	2	9	0.11	1	1	0	0	0	0	0
....................................................................................................................................................................................................AGTTTTGTGGGACAT.......................................	15	1	10	0.10	1	0	0	1	0	0	0
......................CTCGGCGTTAGTTTGGGCTG................................................................................................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	1
........................TTTCGTTAGTTTAGGC..................................................................................................................................................................................................................	16	1	20	0.05	1	1	0	0	0	0	0
.......................................................................................ATGTCTATGAGGTTGTCTGT...............................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:25358144-25358393 -	dsi_30086	ACA-------------TGAG-CGACTTGGATATTAAGAGAAGCAATCAAATCCGACGGCGTGTTAAGTG-----------AACC----TGACCTAGCAAAGATTTCAGCATT---TAGATACAGATACTTCA-AAA--GATAT-A-------------------------TCATTTACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GATGTTAATCATGATGTTAGAGTTAAA--------------CT-T-----------C---T--TTATAGACATATTAC--------------------------TTTTTTG--TGTAATATCAA-------ATAA----CGCTTTTCAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTCCATCACAAATACTC
droSec2	scaffold_4:4865261-4865519 -		ACATA----TATATCCTGAG-CGACTTGGATATTAGGAGAAGCACTCAAATCCGACGGCGTGTTAAGTG-----------AACC----TGACCTAGCAAAGATTTCAGCATT---TAGATACAGATACTTCA-AAA--GATAT-A-------------------------TCATTTACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GATGTTATTCATGACGTTAGAGTTAAA--------------CT-T-----------C---T--TTATAGACATATTAC--------------------------TTTTTTA--TGTAATAACAA-------ATAA----CGCTTTTCAGAACACCCTTTACGACTGGGTTCGCGACCACCGAGTCCATCACAAATACTC
dm3	chr3R:26012494-26012764 -		ACATATGTATATATGCTGAG-CGACTTGGATATTAAGAGAAGCAATCAAATCCGACGGCGTGTTAAGTG-----------AACCCCG-TGACCTAGCAAAGATTTCAGCGTT---TAGATAAGGATACTTTA-AAA--TATAT-A-------------------------TCATTTATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GA---TACTCATGATTTTAGAGTTAAA------------------AGAGTTAAATTC---T--TCTTAGACATATTAC--------------------------TTTTTTA--TGTAATATCAA-------ATAA----CGCCTTTCAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTTCATCACAAATACTC
droEre2	scaffold_4820:1985251-1985522 +		ACATA--------TGCTGAG-TGACTTGGATATTAAGTGAAGCAATCAAATTTGACGACGCGTTAAGTG-----------AACCCC-CAGACCTCCCGAAGATTTATGCTTT---TAGATACAGATACTTTA-AAA--GATAT-A-------------------------TCATTTTTACGGTCCATTTC-----------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------C----GGCGATAAAT---ATGTTAGCATTTAAA-----------------AGA--CAACTTC---T--TCT-GTGCACATTGC--------------------------TTTATTG--TGTAATATCAA-------ACAA----CGCTTTTCAGAACACACTGTACGACTGGGTTCGCGACCATCGAGTTCATCACAAATACTC
droYak3	3R:26945997-26946259 -		ACATA--------TGCTGAG-CGACTTGGATATTAAGAGAAGCCATCAAATTTGACGACTTGTTAAATA-----------AACCCCCCTGACCTAGCGAAGATTTCAGCGTT---TAGATACGGATACTTTA-AAA--GATAT-A-------------------------TCATTTTTACGGTCAATTTCGTTTTATTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTTGTGATTAA--------------CA-T-----------G---T--TTAT---CTGATAAC--------------------------TTCTTTA--TGTAATATCAA-------ATAA----CGCTTTTCAGAACACGCTGTATGACTGGGTTCGCGACCATCGAGTTCATCACAAATACTC
droEug1	scf7180000409555:499910-500149 -		ACGTA----------CTGAG-CCACCTGGAGATTAAGAGGAACAATCAAATTTGATGGCGTGTTAAATG-----------AACCCCGCTGACCCACTAAAGATTGTCTCTTT---TAGATAAAGATACTTTT-AAA-ATGT---ATTT---------GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------GATA------------------TTAAAAAGTCTTAGAAAGCCT-C-----------C---T--GTTTAGATATACTATAATTT------------------------------TTGAATCTTAA-------A---------TCTTTCAGAACACCCTCTACGATTGGGTTCGGGACCATCGAGTTCATCATAAATATTC
droBia1	scf7180000302113:1367745-1368046 +		AA-------------CTGAG-CGACCTGGAGACTAAGAGGAGCA-TCAAATTTGATGGCGTGCTAGGTG-----------AACCCCGCTGACCCGCCAAAGATTGTCACTTT---CCGACGCAGATACTTTA-AGA--GATAC-A-------------------------CGCGTTTTACGATCAGTT--------------------T--------------------------TAATACTAGTTG--GTCTGCTTTTTTA-----------------------------------TGGGAGATATTTTCTTGATGTGTT------------------------------AGATGTGATCGAGAA--------------------ATCT--------------------------------------------------------C---------------TACTATAACTT------------TTTAGGAATTTCCTCA--TCTAATATTCC-------ACAA----ACCCTTCCAGAACACCCTGTACGACTGGGTGCGGGACCACCGAGTCCACCACAAATATTC
droTak1	scf7180000415765:452297-452487 -		ATT----------------------------------------------------------------------------------------------------------------------TAGATTCTTTC-AAA--GATAG-T-----------------------------TTTTGCGATCGGT-------------------------------------------------AATAATAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTTAAAGTTAAAGA---TTAGAAATCCGAC-----------T---TTTTTATA--TTTCTTATAATTTTT-------------AGGATTTTCTTGA--TCTAATATCAA-------ATAAT---CCCATTTCAGAACACCCTGTATGACTGGGTTCGGGACCATCGGGTTCATCACAAATATTC
droEle1	scf7180000491280:2309264-2309620 -		AC--------------TGAG-CGACCTGGAGATTAAGAGGAACAATAAAATTTGATGGAGTGTTAAATG-----------AGCCGCGCTGACCCACTAAAGATTGTCACTTT---TAGGTAAAGTTTCTCCGCA-GAAGGG---CTTTTATGTTCAAAAA-AAATTACATTCATATTTATGACCAATTTTTTTTTATTTTATAAAACGT--------------------------TAATAATAGTTA--GTTTGTTAATGTC-----------------------------------AAAGAGATGGTTGCCTAATATCGCAAAAACTATCAA-ATAATATTAAAAAAGATAAAAGTGCTTGAGAA--------------------ACCT--------------------------------------------------------C---T------------------------------------------TCTCACGA--TCTAATATCAA-------ATAA----ATCCTTTCAGAACACCCTGTACGACTGGGTTCGTGACCACCGAGTTCACCACAAATATTC
droRho1	scf7180000778218:25644-26001 +		G--------------------CAACCTGCAGATTAAGAGGAACAATCAAATTTGATGGAGTGTTAAATG-----------AACCCCGCTGA-----------TTGTCACTTT---TAGATAAGGATTCCTCG-CAG--GAGGC-ATTTTATGTTCAGTAAAAAATTATGTTCGTTTTTACAATCAAATTTGTTATATTTTATGAGGCAT--------------------------TCATGTTGGATA--TTTCGTTATTTTC-----------------------------------AAAGAGATAGTTGTGTAACGTCTTAGAAACTATAAACATGATATTTAAAA---------TGACTAGGAAACCTTTAGCTTATGCCATAT------------------------------------------------------------TTGC------------------AG------------CTCA-------TCTTCCGA--ACTAATATGAT-------ATAA----TTTATTTCAGAACACCCTGTACGACTGGGTTCGGGACCATCGAGTTCACCACAAGTACTC
droFic1	scf7180000454106:455267-455510 +		TT-------------TTGAG-CGACCTGGACATTAAGGGGGACAATCAAAT-TGATGGCGTGTTAAACG-----------AGCCCCGCTGAA-AACTAAACATT-TCGCACT---AAGATTCAGATCT-TCGCA-GGAGGC---ACTTTATGGACAGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA--------------------------------------TAAAAATCG------------------------C-------TAAA--TTGAATACCATTTTT-------------ACTACG----TTT--CTTAACACCCA-------GCAAACTATTTCTTTCAGAACACCCTGTACGACTGGGTTCGCGACCACCGAGTCCACCACAAATACTC
droKik1	scf7180000302261:470431-470665 -		GA-------------CTGAG-CGACCTGAAGATTAAGAGGAACTATCAAATTTAATGACGTGTTAAATG-----------AGCCCCGTTGACCCACAAAAAGGCACAGTCTCTGGGAGATTCGGAAGCTCCC-AGA--GGCGTCTCTTTATGCACTGGGGAAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGCAATCTTAACTGGGA-----------------AA--ACTAATCCCTT-------GTAT----TTCCTTTCAGAATACTTTGTACGACTGGGTGCGTGATCATCGAGTCCACCACAAGTACTC
droAna3	scaffold_13340:21047056-21047377 -		-----------------GAG-CGACCTGTAGATTAAGAGGAACAATAAAATTTGATGGCGTGTTAAATG-----------AACCCCATTGACCCACGAAAGAT------GCT---TAGATATACAT----------------------------------------------TGCTTCACAAACATTA--------------------ACAAAATTGACAAATTTGAAACTGGAATAATTATAGTTACTATTCCCTATTTTCGACTTAGTAGCAATTAACCTTCACACTACAATTTAAGTAATATATTTTTTTG-------------------------------------AGATACG--------------------------AT------------------------------------------------------------CTAT------------------AG------------CTTCCTATTAATCTTTTTATTTT-------AACTATTTCTTAAC---TCGTATTCAGAATACTCTCTATGACTGGGTTCGTGACCATCGAGTCCACCACAAGTACTC
droBip1	scf7180000396413:1396668-1396982 +		-----------------GAGCGGACCTGTAGATTAAGATGAACAATAAAATTTGATGGCGTGTTAAATG-----------AACCCCATTGACCCACAGAATAT------GCT---TAGATATATAT----------------------------------------------TGCTTTACAAACACTT--------------------ACAAAATTGACAAATTTGAAACTGGAATAATAATAGTTGCTGTCCCCTATTTTCAACTTGATAGCAATTAACCTTCACACTACAATTTAAGTAATATTTTTTGCCG-------------------------------------AGATAAG--------------------------AT------------------------------------------------------------CTAC------------------AG------------CTCCCCATT---------------AATCTTAACTATTTTTCAAC---TCGTATTCAGAATACCCTTTACGACTGGGTTCGTGACCATCGGGTTCACCACAAATACTC
dp5	2:1493657-1493874 +		ACA--------------GAC-TTATTTGGAGATTAAGACGAACAATATATTTTTATGTCACGTTAAATGCAAAATTTATTAATCCCTCTGACCCTCAAAAGAGCACATATTCATGGA---------------------------------------------------------------------------------------------------------------ACTCC--------------------------------------------------------------------------------------------------------------------------------AGGAATCGAGGAGCTTACACAATGT----GATGGTA--CATC-----------------------------------------------------------T------------AATGGGAAT-----------------------------T-------TGGT----CTTTTTGCAGAACACTCTGTACGACTGGGTGAGGGACCACCGCGTGCACCACAAATACTC
droPer2	scaffold_7:4296462-4296679 +		ACA--------------GAC-TTATTTGGAGATTAAGACGAACAATATATTTTTATGTCACGTTAAATGCAAAATTTATTAATCCCTCTGACCCTCAAAAGAGCACATATTCATGGA---------------------------------------------------------------------------------------------------------------ACTCC--------------------------------------------------------------------------------------------------------------------------------AGGAATCGAGGAGCTTACACAATGT----GATGGTA--CATT-----------------------------------------------------------T------------AGTGAGAAT-----------------------------G-------TGGT----TTTTCAGCAGAACACTATGTACGACTGGGTGAGGGACCACCGTGTGCACCACAAATACTC
droWil2	scf2_1100000004943:9485490-9485572 -		TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--TGTATCATCCA-------TTTAT---CCATTTATAGCGCGATGCCTACACGTGGGCATTAGATCATAGAATACATCACAAATTCTC
droVir3	scaffold_13047:8252855-8252936 -		TTT-------------TGG--TG------------------ATATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATGCCGCTTTCCATTGGGCTCGCGATCATCGTGTGCATCACAAGTATTC
droMoj3	scaffold_6540:10117184-10117240 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGAACACCATGTACGATTGGGTGCGAGATCATCGAGTGCATCACAAGTACTC
droGri2	scaffold_14906:5784594-5784656 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG----CTCGTTGCAGAATACGCTGTACGATTGGGTGCGGGATCATCGGGTGCATCACAAGTACTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACA-------------TGAG-CGACTTGGATATTAAGAGAAGCAATCAAATCCGACGGCGTGTTAAGTG-----------AACC----TGACCTAGCAAAGATTTCAGCATT---TAGATACAGATACTTCA-AAA--GATAT-A-------------------------TCATTTACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GATGTTAATCATGATGTTAGAGTTAAA--------------CT-T-----------C---T--TTATAGACATATTAC--------------------------TTTTTTG--TGTAATATCAA-------ATAA----CGCTTTTCAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTCCATCACAAATACTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACGACTGGGTTCGCGAC.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACATA----TATATCCTGAG-CGACTTGGATATTAGGAGAAGCACTCAAATCCGACGGCGTGTTAAGTG-----------AACC----TGACCTAGCAAAGATTTCAGCATT---TAGATACAGATACTTCA-AAA--GATAT-A-------------------------TCATTTACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GATGTTATTCATGACGTTAGAGTTAAA--------------CT-T-----------C---T--TTATAGACATATTAC--------------------------TTTTTTA--TGTAATAACAA-------ATAA----CGCTTTTCAGAACACCCTTTACGACTGGGTTCGCGACCACCGAGTCCATCACAAATACTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................CAAATCCGACGGCGTGTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0

dm3

ACATATGTATATATGCTGAG-CGACTTGGATATTAAGAGAAGCAATCAAATCCGACGGCGTGTTAAGTG-----------AACCCCG-TGACCTAGCAAAGATTTCAGCGTT---TAGATAAGGATACTTTA-AAA--TATAT-A-------------------------TCATTTATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GA---TACTCATGATTTTAGAGTTAAA------------------AGAGTTAAATTC---T--TCTTAGACATATTAC--------------------------TTTTTTA--TGTAATATCAA-------ATAA----CGCCTTTCAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTTCATCACAAATACTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................TGAG-CGACTTGGATATTAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TG-----------AACCCCG-TGACCTAGCAAAGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA--TGTAATATCAA-------ATAA----CGCCTT......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGGTTCGCGACCATC...................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCGCGACCATCGAGTTC.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACATA--------TGCTGAG-TGACTTGGATATTAAGTGAAGCAATCAAATTTGACGACGCGTTAAGTG-----------AACCCC-CAGACCTCCCGAAGATTTATGCTTT---TAGATACAGATACTTTA-AAA--GATAT-A-------------------------TCATTTTTACGGTCCATTTC-----------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------C----GGCGATAAAT---ATGTTAGCATTTAAA-----------------AGA--CAACTTC---T--TCT-GTGCACATTGC--------------------------TTTATTG--TGTAATATCAA-------ACAA----CGCTTTTCAGAACACACTGTACGACTGGGTTCGCGACCATCGAGTTCATCACAAATACTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

ACATA--------TGCTGAG-CGACTTGGATATTAAGAGAAGCCATCAAATTTGACGACTTGTTAAATA-----------AACCCCCCTGACCTAGCGAAGATTTCAGCGTT---TAGATACGGATACTTTA-AAA--GATAT-A-------------------------TCATTTTTACGGTCAATTTCGTTTTATTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTTGTGATTAA--------------CA-T-----------G---T--TTAT---CTGATAAC--------------------------TTCTTTA--TGTAATATCAA-------ATAA----CGCTTTTCAGAACACGCTGTATGACTGGGTTCGCGACCATCGAGTTCATCACAAATACTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGACCATCGAGTTC.............	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

ACGTA----------CTGAG-CCACCTGGAGATTAAGAGGAACAATCAAATTTGATGGCGTGTTAAATG-----------AACCCCGCTGACCCACTAAAGATTGTCTCTTT---TAGATAAAGATACTTTT-AAA-ATGT---ATTT---------GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------GATA------------------TTAAAAAGTCTTAGAAAGCCT-C-----------C---T--GTTTAGATATACTATAATTT------------------------------TTGAATCTTAA-------A---------TCTTTCAGAACACCCTCTACGATTGGGTTCGGGACCATCGAGTTCATCATAAATATTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA-------------CTGAG-CGACCTGGAGACTAAGAGGAGCA-TCAAATTTGATGGCGTGCTAGGTG-----------AACCCCGCTGACCCGCCAAAGATTGTCACTTT---CCGACGCAGATACTTTA-AGA--GATAC-A-------------------------CGCGTTTTACGATCAGTT--------------------T--------------------------TAATACTAGTTG--GTCTGCTTTTTTA-----------------------------------TGGGAGATATTTTCTTGATGTGTT------------------------------AGATGTGATCGAGAA--------------------ATCT--------------------------------------------------------C---------------TACTATAACTT------------TTTAGGAATTTCCTCA--TCTAATATTCC-------ACAA----ACCCTTCCAGAACACCCTGTACGACTGGGTGCGGGACCACCGAGTCCACCACAAATATTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATT----------------------------------------------------------------------------------------------------------------------TAGATTCTTTC-AAA--GATAG-T-----------------------------TTTTGCGATCGGT-------------------------------------------------AATAATAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTTAAAGTTAAAGA---TTAGAAATCCGAC-----------T---TTTTTATA--TTTCTTATAATTTTT-------------AGGATTTTCTTGA--TCTAATATCAA-------ATAAT---CCCATTTCAGAACACCCTGTATGACTGGGTTCGGGACCATCGGGTTCATCACAAATATTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AC--------------TGAG-CGACCTGGAGATTAAGAGGAACAATAAAATTTGATGGAGTGTTAAATG-----------AGCCGCGCTGACCCACTAAAGATTGTCACTTT---TAGGTAAAGTTTCTCCGCA-GAAGGG---CTTTTATGTTCAAAAA-AAATTACATTCATATTTATGACCAATTTTTTTTTATTTTATAAAACGT--------------------------TAATAATAGTTA--GTTTGTTAATGTC-----------------------------------AAAGAGATGGTTGCCTAATATCGCAAAAACTATCAA-ATAATATTAAAAAAGATAAAAGTGCTTGAGAA--------------------ACCT--------------------------------------------------------C---T------------------------------------------TCTCACGA--TCTAATATCAA-------ATAA----ATCCTTTCAGAACACCCTGTACGACTGGGTTCGTGACCACCGAGTTCACCACAAATATTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G--------------------CAACCTGCAGATTAAGAGGAACAATCAAATTTGATGGAGTGTTAAATG-----------AACCCCGCTGA-----------TTGTCACTTT---TAGATAAGGATTCCTCG-CAG--GAGGC-ATTTTATGTTCAGTAAAAAATTATGTTCGTTTTTACAATCAAATTTGTTATATTTTATGAGGCAT--------------------------TCATGTTGGATA--TTTCGTTATTTTC-----------------------------------AAAGAGATAGTTGTGTAACGTCTTAGAAACTATAAACATGATATTTAAAA---------TGACTAGGAAACCTTTAGCTTATGCCATAT------------------------------------------------------------TTGC------------------AG------------CTCA-------TCTTCCGA--ACTAATATGAT-------ATAA----TTTATTTCAGAACACCCTGTACGACTGGGTTCGGGACCATCGAGTTCACCACAAGTACTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT-------------TTGAG-CGACCTGGACATTAAGGGGGACAATCAAAT-TGATGGCGTGTTAAACG-----------AGCCCCGCTGAA-AACTAAACATT-TCGCACT---AAGATTCAGATCT-TCGCA-GGAGGC---ACTTTATGGACAGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA--------------------------------------TAAAAATCG------------------------C-------TAAA--TTGAATACCATTTTT-------------ACTACG----TTT--CTTAACACCCA-------GCAAACTATTTCTTTCAGAACACCCTGTACGACTGGGTTCGCGACCACCGAGTCCACCACAAATACTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GA-------------CTGAG-CGACCTGAAGATTAAGAGGAACTATCAAATTTAATGACGTGTTAAATG-----------AGCCCCGTTGACCCACAAAAAGGCACAGTCTCTGGGAGATTCGGAAGCTCCC-AGA--GGCGTCTCTTTATGCACTGGGGAAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGCAATCTTAACTGGGA-----------------AA--ACTAATCCCTT-------GTAT----TTCCTTTCAGAATACTTTGTACGACTGGGTGCGTGATCATCGAGTCCACCACAAGTACTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

-----------------GAG-CGACCTGTAGATTAAGAGGAACAATAAAATTTGATGGCGTGTTAAATG-----------AACCCCATTGACCCACGAAAGAT------GCT---TAGATATACAT----------------------------------------------TGCTTCACAAACATTA--------------------ACAAAATTGACAAATTTGAAACTGGAATAATTATAGTTACTATTCCCTATTTTCGACTTAGTAGCAATTAACCTTCACACTACAATTTAAGTAATATATTTTTTTG-------------------------------------AGATACG--------------------------AT------------------------------------------------------------CTAT------------------AG------------CTTCCTATTAATCTTTTTATTTT-------AACTATTTCTTAAC---TCGTATTCAGAATACTCTCTATGACTGGGTTCGTGACCATCGAGTCCACCACAAGTACTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGGTTCGTGACCATCGA.................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACTGGGTTCGTGACCATCGAGTCC.............	28	1	1.00	1	0	0	0	0	0	1

droBip1

-----------------GAGCGGACCTGTAGATTAAGATGAACAATAAAATTTGATGGCGTGTTAAATG-----------AACCCCATTGACCCACAGAATAT------GCT---TAGATATATAT----------------------------------------------TGCTTTACAAACACTT--------------------ACAAAATTGACAAATTTGAAACTGGAATAATAATAGTTGCTGTCCCCTATTTTCAACTTGATAGCAATTAACCTTCACACTACAATTTAAGTAATATTTTTTGCCG-------------------------------------AGATAAG--------------------------AT------------------------------------------------------------CTAC------------------AG------------CTCCCCATT---------------AATCTTAACTATTTTTCAAC---TCGTATTCAGAATACCCTTTACGACTGGGTTCGTGACCATCGGGTTCACCACAAATACTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACA--------------GAC-TTATTTGGAGATTAAGACGAACAATATATTTTTATGTCACGTTAAATGCAAAATTTATTAATCCCTCTGACCCTCAAAAGAGCACATATTCATGGA---------------------------------------------------------------------------------------------------------------ACTCC--------------------------------------------------------------------------------------------------------------------------------AGGAATCGAGGAGCTTACACAATGT----GATGGTA--CATC-----------------------------------------------------------T------------AATGGGAAT-----------------------------T-------TGGT----CTTTTTGCAGAACACTCTGTACGACTGGGTGAGGGACCACCGCGTGCACCACAAATACTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................CTTACACAATGT----GATGGTA--CA............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTACGACTGGGTGAGG..........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACA--------------GAC-TTATTTGGAGATTAAGACGAACAATATATTTTTATGTCACGTTAAATGCAAAATTTATTAATCCCTCTGACCCTCAAAAGAGCACATATTCATGGA---------------------------------------------------------------------------------------------------------------ACTCC--------------------------------------------------------------------------------------------------------------------------------AGGAATCGAGGAGCTTACACAATGT----GATGGTA--CATT-----------------------------------------------------------T------------AGTGAGAAT-----------------------------G-------TGGT----TTTTCAGCAGAACACTATGTACGACTGGGTGAGGGACCACCGTGTGCACCACAAATACTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--TGTATCATCCA-------TTTAT---CCATTTATAGCGCGATGCCTACACGTGGGCATTAGATCATAGAATACATCACAAATTCTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTGGGCATTAGATCATAGA.................	25	1	3.00	3	0	1	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTGGGCATTAGATCATA...................	23	1	2.00	2	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTGGGCATTAGATC......................	20	1	2.00	2	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGATGCCTACACGTGGGC..............................	22	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGATGCCTACACGTGGGC..............................	21	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGGCATTAGATCATAGA.................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGATCATAGAATACAT...........	19	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACGTGGGCATTAGATC......................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAGATCATAGAATAC.............	19	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTGGGCATTAGATCATAGAATA..............	28	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACACGTGGGCATTAGATCATAGA.................	27	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTGGGCATTAGATCATAGAA................	26	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATGCCTACACGTGGGCAT............................	22	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGTGGGCATTAGAT.......................	19	1	1.00	1	0	0	0	1	0

droVir3

TTT-------------TGG--TG------------------ATATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATGCCGCTTTCCATTGGGCTCGCGATCATCGTGTGCATCACAAGTATTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGATGCCGCTTTCC.....................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTCGCGATCATCGTGTGC.............	22	1	3.00	3	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGTGTGCA............	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTCGCGATCATCGTGTG..............	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCCATTGGGCTCGCGATC......................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCCATTGGGCTCGC..........................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGTGTGC.............	24	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCG..................	19	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTCGCGATCATCGT.................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATGCCGCTTTCC.....................................	30	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGATGCCGCTTTCCATT..................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTCGCGATCATCGTGTGCA............	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCCATTGGGCTCGCG.........................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGTGTGCATCACA.......	19	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGTGTGCAT...........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCGCTTTCCATTGGGCT.............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGGATGCCGCTTTC......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCGATCATCGTGTGC.............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGATCATCGTGTGC.............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCTTTCCATTGGGCTCGCGATC......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTTTCCATTGGGCTCGCG.........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCATTGGGCTCGCGAT.......................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTGGGCTCGCGATC......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCATTGGGCTCGCGATCA.....................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATGCCGCTTTCCAT...................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGCTTTCCATTGGGCT.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGTGCATCACAAGTATT.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGA................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCTTTCCATTGGGCTCGC..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGT.................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCATTGGGCTCGC..........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGTGTGCATCACAAGTATTC	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATGC.............................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTGGGCTCGCGATCATCGTGT...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTGGGCTCGCGATCA.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCA...................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGGATGCCGCTTTCCATT..................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGTGTGCATCA.........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCATTGGGCTCGCGATCATC...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTCGCGATCATCGTGTGCATCA.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGTG................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CGGT----GGCCTTCCAGGATGCCGCT.........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATG..............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTGTGCATCACAAGTATTC	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGA................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCCATTGGGCTCGCGATCATC...................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGGCTCGCGATCATCGTGTGC.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................TTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGAT...............................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGA................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATGC.............................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TT-------------TGG--TG------------------ATATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................G------------------ATATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCC........................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTTCCATTGGGCTCGCGAT.......................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCATTGGGCTCGCG.........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTT......................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------CGGT----GGCCTTCCAGGATGC.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATTGGGCTCGCGATCATCGT.................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTCGCGATCATCGTGTGC.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGGCTCGCGATCATCGTGTG..............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGCTTTCCATTGGGCTCGC..........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTTTCCATTGGGCTCGC..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCTCGCGATCATCGTGTG..............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGATGCCGCTTTC......................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTCGCGATCATCGTGTGCA............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGGATGCCGCTTT.......................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTT-------------TGG--TG------------------ATATTCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------C...................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATCATCGTGTGCATC..........	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCATCGTGTGCATCACA.......	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGTGTGCATCACAA......	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTGTGCATCACAAGT....	19	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGTGTGCATCAC........	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGTGCATCACAAGT....	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGTGTGCATCACAAGT....	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGAACACCATGTACGATTGGGTGCGAGATCATCGAGTGCATCACAAGTACTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG----CTCGTTGCAGAATACGCTGTACGATTGGGTGCGGGATCATCGGGTGCATCACAAGTACTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_30086

3r:25358194-25358343 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads