ID:

dsi_3008

 Coordinate:

3l:11673021-11673074 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.5 -7.9 -7.9 -7.5

Flybase annnotation

exon [3l_11672476_11673460_+]; CDS [3l_11672476_11673273_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################
GACAAGGCGCAGGGTATATGTTTGCTGAAGGACGCCATGGCCATGATCTCGTGCAACCTTAGGGAATGCCTGAAGCGAAGCCAATTCGAGCCATTTGCCGCCGAGAACACCAAGTCCGGCTTCTGTTCCTGTGACGATCTGCAGCGCGTTAGTG
**************************************************........((...(((((.((....((((.....)))))).)))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................TTCCTGTGACGATCTGCAGCGC....... 22 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................CTGTTCCTGTGACGATCTGCA........... 21 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................GTCCGGCTTCTGTTCCTGT...................... 19 0 1 2.00 2 2 0 0 0 0 0 0
...............ATATGTTTGCTGAAGGACGCC...................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..............................GACGCCATGGCCATGATCTCGTGC.................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
...............ATATGTTTGCTGAAGGACGCCATGGC................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
....................................ATGGCCATGATCTCGTGC.................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................AGTCCGGCTTCTGTTCCT........................ 18 0 1 1.00 1 1 0 0 0 0 0 0
...............ATATGTTTGCTGAAGGAC......................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................GAACACCAAGTCCGGCTTCTGC............................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................GACGCCATGGCCATGATCTCGTGCAAC................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.............GTATATGTTTGCTGAAGGACGCC...................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.............GTATATGTTTGCTGAAGGACGCCAT.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................GTGACGATCTGCAGCGCG...... 18 0 1 1.00 1 1 0 0 0 0 0 0
.............GTATATGTTTGCTGAAGGAC......................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................GTTCCTGTGACGATCTGCAGC......... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................GTTCCTGTGACGATCTGC............ 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................GTGCAACCTTAGGGAATGC..................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..............................................TCTCAGGCAACCCTAGGGAAT....................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................CACCAAGTCCGGCTTCTGTTCCC........................ 23 1 1 1.00 1 1 0 0 0 0 0 0
.................ATGTTTGCTGAAGGACGCCATGGCC................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................GCCATGGCCATGATCTCGTGC.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................GAACACCAAGTCCGGCTTCT.............................. 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................GTTCCTGTGACGATCTGCA........... 19 0 1 1.00 1 1 0 0 0 0 0 0
...............ATATGTTTGCTGAGGGACGCCATGGC................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................GCCTGAAGCGAAGCCAATTCGAG................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................CCGGCTTCTGTTCCTGTGAC................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................GACGCCATGGCCATGATCTCGT...................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...................GTTTGCTGAAGGACGCCATGGCC................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................GACGATCTGTAGCGGGT..... 17 2 9 0.33 3 0 0 2 0 1 0 0
....................................................................................................................................GACGATCTGTAGCGGGTC.... 18 3 20 0.30 6 0 0 2 4 0 0 0
..................................................................................................................................GCGACGATCTGTAGCG........ 16 2 20 0.25 5 0 0 3 1 1 0 0
.....................................TTGCCATGAGCTCGTGAAAC................................................................................................. 20 3 6 0.17 1 0 0 0 1 0 0 0
....................................................................................................................................GACGATCTGTAGCGGG...... 16 2 20 0.15 3 0 0 2 0 0 0 1
.....................................................................................................................................ACGATCTGTAGCGGGT..... 16 2 20 0.15 3 0 0 0 3 0 0 0
..............................................................................AGCCAATTCGAGCGA............................................................. 15 1 11 0.09 1 0 0 0 0 0 1 0

Anti-sense strand reads

CTGTTCCGCGTCCCATATACAAACGACTTCCTGCGGTACCGGTACTAGAGCACGTTGGAATCCCTTACGGACTTCGCTTCGGTTAAGCTCGGTAAACGGCGGCTCTTGTGGTTCAGGCCGAAGACAAGGACACTGCTAGACGTCGCGCAATCAC
**************************************************........((...(((((.((....((((.....)))))).)))))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................TTCAGGCCGAAGACTACGAAA...................... 21 3 3 1.00 3 3 0 0
.................................GGGTACCGTTACTAGAGCAGGT................................................................................................... 22 3 2 0.50 1 0 1 0
..............................................................................................................GTTCAGGCCGAAGACTACTA........................ 20 3 8 0.13 1 1 0 0
............................................................................CTTCCGTTAAGCTCG............................................................... 15 1 16 0.06 1 0 0 1

Generated: 04/24/2015 at 10:34 AM