ID:

dsi_30076

 Coordinate:

2r:15708169-15708318 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.5 -38.3 -38.3

Flybase annnotation

exon [2r_15708319_15708862_+]; five_prime_UTR [2r_15708319_15708373_+]; intron [2r_15701932_15708318_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTCCCCAACGTTTCATATTTTCCCCAAAGAAAATTGTACAAATTCTATAAATAGAATACGACGGGGACGGAGGTTGGGAAGGAGGGGGATTAAGATCTTTCATGGCTGCCCCGATACACAAATTCCTCTCATCTCAACCCATTTCGGAGATACTCTCGCCAGATGAGAAACACCCACTAAACGACTCTATTCCCGCAGTACGATAACGACGATGACGACGATCTGTGGGATTAACTCGGCCTGGAACT
**************************************************.............((((((.(((((((((((..((((((((((...(((...............))).....)))))))))).))))))).(((((.((.((.....)).)))))))...................)))).))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
..............................................................................................................................................................................CCCACTAAACGACTCTATTCC....................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCATCTGTGGGATTA............... 16 1 3 1.33 4 0 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GACGACGATCTGTGGGATT................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................TAAATAGAAAACGACGGGGACGGAGGT.............................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................GACGATCTGTGGGATGAACC............ 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GACGACGATCTGTGGGAT................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GATGACGACGATCTGTGGGATT................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................AGGAAGGATGGGGATTAAG.......................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GATGACGACGATCTGTGGGAT................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GATGACGACGATCTGTGGGATTA............... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCTACCATCTGTGGGATTA............... 19 3 19 0.74 14 0 8 0 6 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTACCATCTGTGGGATTA............... 18 2 3 0.67 2 0 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACCATCTGTGGGATTAT.............. 17 2 14 0.64 9 0 6 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTACCATCTGTGGGATT................ 17 2 11 0.55 6 0 4 0 2 0 0 0 0 0 0 0
...................................................AATAGAATAGGACGGG....................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GATTAACTGGACCTGGAAC. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................GAAGGATGGGGATTAAGAA........................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACGACGATCACGACGATCA........................ 20 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................ACCATCTGTGGGATT................ 15 1 12 0.33 4 0 3 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TACCATCTGTGGGATTA............... 17 2 10 0.30 3 0 3 0 0 0 0 0 0 0 0 0
..............................................................ACGGGGACGGTGGTGGGGA......................................................................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................GACGGGGTCGGTGGTGGGGA......................................................................................................................................................................... 20 3 12 0.17 2 0 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AAAACGACGATCACGACGATCA........................ 22 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
TTTTCCGAAACGTTTTATATTTT................................................................................................................................................................................................................................... 23 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
............................................................TGACGGGGACGGTGGTGGGGA......................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
........................................................AATACGACGGGGATGTAGC............................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................CTACCATCTGTGGGAT................. 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACCGACGATCACGACGATCA........................ 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................CGGGGACGGTGGTGGGGA......................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................CTGTGGGATGAACCAGGCC....... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................GACGCTCTGTGGGATT................ 16 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................CTACCATCTGTGGGATTAT.............. 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
........AACATATCATACTTTCCCC............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................GAAGGATGGGGATTAAGTA........................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACGATATCGACGATCACGT.............................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AAAAGGGGTTGCAAAGTATAAAAGGGGTTTCTTTTAACATGTTTAAGATATTTATCTTATGCTGCCCCTGCCTCCAACCCTTCCTCCCCCTAATTCTAGAAAGTACCGACGGGGCTATGTGTTTAAGGAGAGTAGAGTTGGGTAAAGCCTCTATGAGAGCGGTCTACTCTTTGTGGGTGATTTGCTGAGATAAGGGCGTCATGCTATTGCTGCTACTGCTGCTAGACACCCTAATTGAGCCGGACCTTGA
**************************************************.............((((((.(((((((((((..((((((((((...(((...............))).....)))))))))).))))))).(((((.((.((.....)).)))))))...................)))).))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
.............................................................................................................CGGGGATATGGGTTTAAG........................................................................................................................... 18 2 3 70.00 210 117 42 35 7 7 1 1 0 0 0 0 0
.............................................................................................................CGGGGATATGGGTTTAAGC.......................................................................................................................... 19 3 12 17.58 211 136 29 40 0 4 0 0 1 1 0 0 0
.............................................................................................................CGGGGATATGTGTTTAAGCTG........................................................................................................................ 21 3 2 3.50 7 6 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGGGATATGCGTTTAAG........................................................................................................................... 18 2 4 1.50 6 2 4 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGGGATATGTGTTTAAG........................................................................................................................... 18 1 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTGCTACTGCTGCTAGACACC.................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGGGATATGTGTTTAAGC.......................................................................................................................... 19 2 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCGGGGATATGGGTTTAAG........................................................................................................................... 19 3 16 0.94 15 3 1 10 1 0 0 0 0 0 0 0 0
.............................................................................................................CGGGGATATGGGTTTAA............................................................................................................................ 17 2 12 0.42 5 0 0 0 3 0 1 0 0 0 0 1 0
..............................................................................................................GGGGATATGGGTTTAAG........................................................................................................................... 17 2 18 0.17 3 0 0 0 2 0 0 0 0 1 0 0 0
....................................................................................................................ATGTGTTTACGGAGAGGA.................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................TAAGAAGAGTAGGGCTGGGT........................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................GGCGGGGATATGGGTTTAAG........................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGGGATATGAGTTTAAGC.......................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGAGATCGGGGCGTCA................................................. 16 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................CGGGGATATGTGTTAAAGC.......................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AAGTTTCGACGGGGCTA..................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................GGGGATATGGGTTTAA............................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................AAGGAGTGTAGAGATGCGT........................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................TTCTAGCTAGTACCGA............................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:15708119-15708368 + dsi_30076 TTTTCC--CCAACGTTTCATATTTT-CC--CCAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TACGACGGGGACG-----------GAGGTTGGGAAGG---A---------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCCA-CTA-AACGA----------------------CTCT--A-------------T------TCCCGCAGTA---CGATA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGGCCTGGAACT
droSec2 scaffold_1:12570672-12570914 + TTTTCA---AAACGTTTCATATTTT-CC--CCAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TACG---GGGACG--------------GTTGGGGAGG---A---------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CACGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCTA-CTA-AACGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGATA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGGCCTGGAACT
dm3 chr2R:15057925-15058172 + TTTTCC---CAACGTTTCATATTTTTCC--CCAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TACGACAGAGACG--------------TTTGGGCAGG---AG--------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGATA-----A-------TGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGGCCTGGAACT
droEre2 scaffold_4845:9257989-9258242 + TTTTCC---CAACGTTTCATATTTT-CCCCCAAAAGAAAAT--------------------------TGTACAAACTCTATAAATAGAA------TACGACGGGGACG--------------GTTGGCTAGC---A---------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TGCTCTCATC-TCAA-CCTCATCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGATA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACGCGGCCTGGAACT
droYak3 2R:14121240-14121509 - TTTTTC--CCAACGTTTCATATTTT-CCCCCAAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TGCGACGGCGACG--------------GTTGGTTAGGAGGA---G-------GAGGAGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-ACAC-A----ACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-GCTCTCCGC-------------------C-------AGAGAAGAGAAA--CACCCA-CTA-AAAGA----------------------CTCTATA-------------TTCCCATGCCCGCAGAA---CGATA-----A-------CGAC---GATGACGAC---GAACTGTGGGATT---------------AACACCGCCTGGAACT
droEug1 scf7180000409663:247880-248143 - TTTTTT---CACCGTTTCATATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTATAATTAGAA------TGTGCTGAGCATGAAAGGGGAGTGGAGATTGAG----AAGCG--------------GGGGACT-TTAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TTCTCTCATC-CCAA-A-----ACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--AGCGATTTCTCT-CGC-------------------C-------CG--ATGAGAAA--CACCCA-CTATAATGA----------------------CTAT--A-------------T------TCCCGCAGAA--CCGACA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACT
droBia1 scf7180000302292:1283410-1283663 - TTTTTC---CAACGTTTCTTATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTTTAAATAGAA------TGCGATGGGGATT-----------------G-GGAGCTAGA---------------GGGGGAT-TTAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TTAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCGCGGAGAT-GCTCT-CGC-------------------TGCGGTGATG--ATGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACA-----A-------CGAC---GATGACGAC---GATCTGCGGGATT---------------AACGCGCCCTGGAACT
droTak1 scf7180000415386:176113-176356 + TTTTTT---CAAC-TTTCATATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTTAAAATAGAA------TGCGATGAGGATG------------------GGTAGCAAGA---------------GGGGGAT-TTAGATCTTTAATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--GGAGAT-GCTCT-CGC-------------------C-------CG--CTGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACA-----A-------CGAT---GATGCCGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACT
droEle1 scf7180000491009:79972-80233 - TTTTTT---CAACGTTTCATATTTTCCC--CAAAAGAAAAT--------------------------TGTACAAGTTCTATAATTAGAT------AGCGATGAGGATG--------------TTGGGACAGC---AGGGGAAACGGGGGGAAGGGAAG-GGAGATCTTTCATGGCTGC----------CCCGATACACAAAA------TCCACTCGCC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGC--GGAGAT-TCTCT-CGC-------------------C-------AA--GTGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACC-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACT
droRho1 scf7180000780106:196540-196776 - TTTTTC---CAACGTTTCATATTTT-CC--CAAAAGAAA----------------------------------AGTTCTATAATTAGAT------AGCGATGAGAATG------------------GGGAGCAACA---------------GGGGGAG-GCAGATCTTTCATGGCTGC----------CCCGATACACAAAA------TCCTCTCGCC-TCAT-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--GGAGAT-TCACT-TGC-------------------C-------AA--GTGAGAAA--CACCCA-ATA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCACCCTGGAACT
droFic1 scf7180000454044:870347-870589 + TTTTTC---CAACGTTTCATATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTATAATTAGAA------TGCGTTGAGGATG------------------GGGCTT---T---------------GGGGGAT-GTAGATCTTTAATGGCTGC----------CTCGATACACAAAA------TCCTCTCACCCTCTA--------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--GGAGAA-TCGTT-CGC-------------------C-------GA--ATGAGAAG--CACCCA-CTA-TATGA-----------------A----CTAT--A-------------T------TCCCGCAGAA---CGACA-----A-------TGAT---GATGACGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACT
droKik1 scf7180000302682:864643-864903 + -----------ACGTTTCATATTTTTCC--CAAAAGAAAATT-------GTTTTTGT----------TGTACAAATTCTATAATTAGAA------CGAGTTGAG----------------------------------------------------------GATCTTTCATGGCTGTGCCCCGCCGACCCAATACACAAAA------TAGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-CGC-------------------C-------AAA-ATGAGAGAGCCA-CCA-CTA-CCAACATCAGCCAGCACCTTTCACTAATTCG-TATCCCATCCATCCATTTGTA-TCCCACAGAA---CTACT--ACGACGAACCACGAC---AATGCCGAC---AATCTGTGGGATT---------------AACGCTCGCTGGAACT
droAna3 scaffold_13266:11500931-11501155 - CTTTCCAACGAACGTCTCATAGGTT-CC--CCAACGAAAATC-------------------------CGAACGGATTCTATAAATAGGG------C-----GGGGACT-----------G-----GGGCAGGCGGC--------------CGGGGGAG-GGAG-CCGTTCATGGCTGC----------CCCGATACAGAAAA------TTGTCTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------CT--CTCAGATA--CACGAATCTA-AAAGA----------------------TACT----------------T------TCCCGCAGAC---CGACT--CCGC-------CGAC---GATGACGACGCTGATCCGGGGGATT---------------ATCGCGCGCCGGAACT
droBip1 scf7180000396547:967058-967275 + TTTTTC--TGAACGTCCTATAGCTT-CC--CAAATGAAAATC-------------------------TGAACAGATTCTATAAATAGAG------CG-----GGGACT-----------G-----GGGCAGGAACT---------------TGGGGGT-TGGGGGCT-------CTGC----------CCCGATACAGAAAA------TCATCTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------CT--CTGAGATA--CACGAAACTA-TAAGA----------------------TACT----------------T------TCCCACAGAC---CGACACTCCGA-------CGAC---GATGACGACGTTGATCCGTGGGATT---------------ACCTCGCGCCGGAACT
dp5 3:9891076-9891367 + TTTTT------------CATATTTT-CATTTTCATGAAAAT--------------------------TGTTCGAGTTCTATAAATAGACACGCCCAGCGGTGGGGCTG-----------C-----GGGTAGGAAGG---------------GAGGGATGGGAGGTGTTTCATGGC-----------------ATACAGAAACCATGGCATCTCTCATC-TGT-----------------------------------------------------------------------------------------------------------------TGCTCTCT----------------CTCTCTCTATCTCTGTC------------TGTGGCACATACC--ACGAGT-ACTCT-GGCTCTCGTATAATACAACTAT-----------------------------TTC-TCTGT----------------------CTGA--T-------------C------TTCGACAGAACACCGACT-----A-------CGAC---GATGAT------GAACCAACGCCTGGACCTCGGCTGGAACTCGTCCGTCTGCTGCT
droPer2 scaffold_4:5209115-5209404 + TTTTT------------CATATTTT-CATTTTCATGAAAAT--------------------------TGTTCGAGTTCTATAAATAGACACGCCCAGCGGTGGGGCTG-----------C-----GGGTAGGAAGG---------------GAGGGATGGGAGGTCTTTCATGGC-----------------ATACAGAAACCAAGACATCTCTCATC-TGT-----------------------------------------------------------------------------------------------------------------TGCTCTCT------------------CTCTCTATCTCTGTC------------TGTGGCACATACC--ACGAGT-ACTCT-GGCTCTCGTATAATACAACTAT-----------------------------TTG-TCTGT----------------------CTGA--T-------------C------TTCGGCAGAACACCGACT-----A-------CGAC---GATGAT------GAACCAACGCCTGGACCTCGGCTGGAACTCGACCGTCTGCTGCT
droWil2 scf2_1100000004822:1754210-1754473 + TTTTTT---TTTT-------------T---------AAAAATGTTCATAATTTTTGCCAGAGAAAATT-------TGCTATAAATAGAC------TTGGGGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTACACATACACATAGAAGGAAATATAT---ATACAAAGAGATATATGTATATATATC------------GGAAGATCTCT------------------CTCTTTTTCCTTGTTTCTCTCTCAGTTT-------GTCTA--ATAA-T-TGTCT-CTC-------------------TTTTTGACTG--TTTTGCAG--CATTCA-ACA-AAAAA----------------------AAAT--A----------------------------------TATC-----A-------AAATAATGATGATTCC---TTGCTGGAATTTG---------------ATTTCTATCTGTTAAT
droVir3 scaffold_13324:2701658-2701912 + TTTTT------------CATATTTT-C----AAACGAAAAAT----------TTAAA----------AAAAAAGAATCTATAAATAGGC------AC-----GG----------------------------------------------------------GTCTTTTCATGGCTGC----------CCA----TAGAGAT------CTCAGAGATC-TGAG-A-----GCTCCCAGAGCCAGTGGTGCTACGTTG--TTG------------------------------------------------TAGATAC---CGACTATA----------TGTTTCGAT----------ATCG-----AATTCGAAGT------------TGCAACTCATTCC--GTGA-----------------------------------------------------------------TTGT----------------------TCCG-AT-------------TTGCAG-----GCTTAACTGGGATT-----T-------TAAT---GATGCTGAC---CGCCCCGTGGATC---------------GTCGCCATGCGCTGCT
droMoj3 scaffold_6496:14092555-14092830 - dmo_1146 TTTTT------------CATATTTT-CTAATGAAAAAAAAAT-------------------------GTTCAAAGTTCTATAAATAGAC------ATGGCTATACACA-----------------------------------------------------------------------------------------GAGATCGCAGCAG-----------AGCA-----GATCCCCGAGCCAGTGGCGCT-TGTTG--TTGCAATACACATACACACAAACACACACAC---ACACACTTAGATACACCTAAATATACTGTTATATATGGGCCA-ACTGTTTCGAATTACTAACTAATCC-----------------------------------------------------------------------------------------------------------------AA----------------------TTCG-AA-------------TTTCAGACTTTG--TTG---CCATT-----A-------TGAT---GCTGCTGTC---TGATCGCTGGACC---------------TGCACCATGCTCTGTT
droGri2 scaffold_15112:4770516-4770788 - TTTTTT-----------TATATATC-CCAATGAACAAATATT----------T--------------TTTTAAATATCTATAAATAGAC------GT-----GGGACT-----------TCTGTTG-----GCCGA---------------GAGAGAT-C--------------------------------------------------------------------------CCCGAGCCATACACAGA-TTTTGACTGCTTACACAGACACACACAACCACACACACAACATACACACACTTACACGTAAATGT---GGCCTATATGTGCCAAACTGTTTCGAT----------ATCA-----------------------------------TTTTC--GAAGTT-ATTC---AC-------------------T-------GG--GT---------------TTA-ACTGT----------------------TTCC-AC-------------TTTCAG-TCCG---GCA---CGATT-----A-------TAAT---GATGATGTT---GT---------------------------------AATGATGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTCC--CCAACGTTTCATATTTT-CC--CCAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TACGACGGGGACG-----------GAGGTTGGGAAGG---A---------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCCA-CTA-AACGA----------------------CTCT--A-------------T------TCCCGCAGTA---CGATA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGGCCTGGAACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCA-CTA-AACGA----------------------CTCT--A-------------T------TCC...........................................................................................2112.00220000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGATT---------------................1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGAT................................1811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAC---GATCTGTGGGATT---------------................2211.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAC---GATCTGTGGGAT................................2111.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAC---GATCTGTGGGATT---------------A...............2311.00110000000000000000
droSec2
TTTTCA---AAACGTTTCATATTTT-CC--CCAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TACG---GGGACG--------------GTTGGGGAGG---A---------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CACGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCTA-CTA-AACGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGATA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGGCCTGGAACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGATT---------------A...............2011.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATCTGTGGGATT---------------AACT............2011.0010100
..................................................................................................G---GGGACG--------------GTTGGGGAGG---A---------------GGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
dm3
TTTTCC---CAACGTTTCATATTTTTCC--CCAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TACGACAGAGACG--------------TTTGGGCAGG---AG--------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGATA-----A-------TGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGGCCTGGAACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGAT................................18127.002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATCTGTGGGATT---------------AACTCG..........2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAC---GATCTGTGGGAT................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----A-------TGAC---GATGACGAC---GATCTGTGGGAT................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TAAATAGAA------TACGACAGAGACG--------------TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGACGAC---GATCTGTGGGATT---------------AAC.............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----A-------TGAC---GATGACGAC---GATCTGT.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----A-------TGAC---GATGACGAC---GATCTGTGGGA.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAC---GATCTGTGGGAT................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATCTGTGGGATT---------------AACATC..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATCTGTGGGATT---------------AACTCGGC........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAC---GATCTGTGGGATT---------------A...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGATT---------------AACTCGGC........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................TATAAATAGAA------TACGACAGAGACG--------------TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGATT---------------AACTCGGCCTGG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGGATT---------------AACTCGGCCTGGAAC.2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTCC---CAACGTTTCATATTTTTCC--CCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGATT---------------AACTCGGCC.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGATT---------------A...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACGAC---GATCTGTGGGAT................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGACGAC---GATCTGTGGGAT................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGC........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAG......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAC--GGAGAT-ACTCT-CGC-------------------.....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--A-------------T------TCCCGCAGAA---CGATA-----A-------TGAC---........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----A-------TGAC---GATGACGAC---GATC........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATCTGTGGGATT---------------AACTCGGC........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC---GATCTGTGGGATT---------------AACTCGGCC.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGATT---------------AACTCGGCCTG.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AC--GGAGAT-ACTCT-CGC-------------------C-------AG--A........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GACG--------------TTTGGGCAGG---AG--------------GGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GATGACGAC---GATCTGT.....................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGATT---------------AACTCGGC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGATT---------------AACTCGGCC.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATCTGTGGGATT---------------AAA.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGAC---GATCTGTGG...................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----A-------TGAC---GATGACGAC---GATCTGT.....................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGGGATT---------------AACTCGG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AGACG--------------TTTGGGCAGG---AG--------------GGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATA-----A-------TGAC---GATGACGAC---GA..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCC..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTCC--CCAAAGAAAAT--------------------------TGTACAAATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATCTGTGGGATT---------------AACTCGGCCT......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TAC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGA...................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTCC---CAACGTTTCATATTTT-CCCCCAAAAGAAAAT--------------------------TGTACAAACTCTATAAATAGAA------TACGACGGGGACG--------------GTTGGCTAGC---A---------------GGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TGCTCTCATC-TCAA-CCTCATCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-ACTCT-CGC-------------------C-------AG--ATGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGATA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACGCGGCCTGGAACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GATCTGTGGGATT---------------AACGC...........2411.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGATT---------------AACGCGGC........2111.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----A-------CGAC---GATGACGAC---GATCTGTGG...................................2611.0011000000
droYak3
TTTTTC--CCAACGTTTCATATTTT-CCCCCAAAAGAAAAT--------------------------TGTACAAATTCTATAAATAGAA------TGCGACGGCGACG--------------GTTGGTTAGGAGGA---G-------GAGGAGGGGAT-TAAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-ACAC-A----ACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC--GGAGAT-GCTCTCCGC-------------------C-------AGAGAAGAGAAA--CACCCA-CTA-AAAGA----------------------CTCTATA-------------TTCCCATGCCCGCAGAA---CGATA-----A-------CGAC---GATGACGAC---GAACTGTGGGATT---------------AACACCGCCTGGAACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GATGACGAC---GAACTGTGGGAT................................2311.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAC---GAACTGTGGGATT---------------AAC.............2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GAACTGTGGGATT---------------AACA............1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GAACTGTGGGATT---------------AACACCGCCT......2511.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----A-------CGAC---GATGACGAC---GAACTGT.....................................2211.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA---CGATA-----A-------CGAC---GATGACG.................................................2111.00100000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATT---------------AACACCGCCTGG....1811.00100100000000
droEug1
TTTTTT---CACCGTTTCATATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTATAATTAGAA------TGTGCTGAGCATGAAAGGGGAGTGGAGATTGAG----AAGCG--------------GGGGACT-TTAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TTCTCTCATC-CCAA-A-----ACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--AGCGATTTCTCT-CGC-------------------C-------CG--ATGAGAAA--CACCCA-CTATAATGA----------------------CTAT--A-------------T------TCCCGCAGAA--CCGACA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTTC---CAACGTTTCTTATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTTTAAATAGAA------TGCGATGGGGATT-----------------G-GGAGCTAGA---------------GGGGGAT-TTAGATCTTTCATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TTAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTCGCGGAGAT-GCTCT-CGC-------------------TGCGGTGATG--ATGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACA-----A-------CGAC---GATGACGAC---GATCTGCGGGATT---------------AACGCGCCCTGGAACTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTTT---CAAC-TTTCATATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTTAAAATAGAA------TGCGATGAGGATG------------------GGTAGCAAGA---------------GGGGGAT-TTAGATCTTTAATGGCTGC----------CCCGATACACAAAT------TCCTCTCATC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--GGAGAT-GCTCT-CGC-------------------C-------CG--CTGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACA-----A-------CGAT---GATGCCGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTTT---CAACGTTTCATATTTTCCC--CAAAAGAAAAT--------------------------TGTACAAGTTCTATAATTAGAT------AGCGATGAGGATG--------------TTGGGACAGC---AGGGGAAACGGGGGGAAGGGAAG-GGAGATCTTTCATGGCTGC----------CCCGATACACAAAA------TCCACTCGCC-TCAA-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGC--GGAGAT-TCTCT-CGC-------------------C-------AA--GTGAGAAA--CACCCA-CTA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACC-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTTC---CAACGTTTCATATTTT-CC--CAAAAGAAA----------------------------------AGTTCTATAATTAGAT------AGCGATGAGAATG------------------GGGAGCAACA---------------GGGGGAG-GCAGATCTTTCATGGCTGC----------CCCGATACACAAAA------TCCTCTCGCC-TCAT-------CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--GGAGAT-TCACT-TGC-------------------C-------AA--GTGAGAAA--CACCCA-ATA-AAAGA----------------------CTCT--A-------------T------TCCCGCAGAA---CGACA-----A-------CGAC---GATGACGAC---GATCTGTGGGATT---------------AACTCACCCTGGAACTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTTC---CAACGTTTCATATTTT-CC--CAAAAGAAAAT--------------------------TGTACAAGTTCTATAATTAGAA------TGCGTTGAGGATG------------------GGGCTT---T---------------GGGGGAT-GTAGATCTTTAATGGCTGC----------CTCGATACACAAAA------TCCTCTCACCCTCTA--------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC--GGAGAA-TCGTT-CGC-------------------C-------GA--ATGAGAAG--CACCCA-CTA-TATGA-----------------A----CTAT--A-------------T------TCCCGCAGAA---CGACA-----A-------TGAT---GATGACGAC---GATCTGTGGGATT---------------AACTCGCCCTGGAACTSizeHit CountTotal NormTotal
No Reads
droKik1
-----------ACGTTTCATATTTTTCC--CAAAAGAAAATT-------GTTTTTGT----------TGTACAAATTCTATAATTAGAA------CGAGTTGAG----------------------------------------------------------GATCTTTCATGGCTGTGCCCCGCCGACCCAATACACAAAA------TAGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-CGC-------------------C-------AAA-ATGAGAGAGCCA-CCA-CTA-CCAACATCAGCCAGCACCTTTCACTAATTCG-TATCCCATCCATCCATTTGTA-TCCCACAGAA---CTACT--ACGACGAACCACGAC---AATGCCGAC---AATCTGTGGGATT---------------AACGCTCGCTGGAACTSizeHit CountTotal NormTotal
No Reads
droAna3
CTTTCCAACGAACGTCTCATAGGTT-CC--CCAACGAAAATC-------------------------CGAACGGATTCTATAAATAGGG------C-----GGGGACT-----------G-----GGGCAGGCGGC--------------CGGGGGAG-GGAG-CCGTTCATGGCTGC----------CCCGATACAGAAAA------TTGTCTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------CT--CTCAGATA--CACGAATCTA-AAAGA----------------------TACT----------------T------TCCCGCAGAC---CGACT--CCGC-------CGAC---GATGACGACGCTGATCCGGGGGATT---------------ATCGCGCGCCGGAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGGGGATT---------------ATCGCGCGCCGG....2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGGGGATT---------------ATCGCGCGCC......2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGCTGATCCGGGGGAT................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGGGGGATT---------------ATCGCGCG........2111.001100000
droBip1
TTTTTC--TGAACGTCCTATAGCTT-CC--CAAATGAAAATC-------------------------TGAACAGATTCTATAAATAGAG------CG-----GGGACT-----------G-----GGGCAGGAACT---------------TGGGGGT-TGGGGGCT-------CTGC----------CCCGATACAGAAAA------TCATCTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------CT--CTGAGATA--CACGAAACTA-TAAGA----------------------TACT----------------T------TCCCACAGAC---CGACACTCCGA-------CGAC---GATGACGACGTTGATCCGTGGGATT---------------ACCTCGCGCCGGAACTSizeHit CountTotal NormTotal
No Reads
dp5
TTTTT------------CATATTTT-CATTTTCATGAAAAT--------------------------TGTTCGAGTTCTATAAATAGACACGCCCAGCGGTGGGGCTG-----------C-----GGGTAGGAAGG---------------GAGGGATGGGAGGTGTTTCATGGC-----------------ATACAGAAACCATGGCATCTCTCATC-TGT-----------------------------------------------------------------------------------------------------------------TGCTCTCT----------------CTCTCTCTATCTCTGTC------------TGTGGCACATACC--ACGAGT-ACTCT-GGCTCTCGTATAATACAACTAT-----------------------------TTC-TCTGT----------------------CTGA--T-------------C------TTCGACAGAACACCGACT-----A-------CGAC---GATGAT------GAACCAACGCCTGGACCTCGGCTGGAACTCGTCCGTCTGCTGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGACCTCGGCTGGAACTC..............2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGACCTCGGCTGGAAC................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGGAACTCGTCCGTCT......2011.0010100000000
droPer2
TTTTT------------CATATTTT-CATTTTCATGAAAAT--------------------------TGTTCGAGTTCTATAAATAGACACGCCCAGCGGTGGGGCTG-----------C-----GGGTAGGAAGG---------------GAGGGATGGGAGGTCTTTCATGGC-----------------ATACAGAAACCAAGACATCTCTCATC-TGT-----------------------------------------------------------------------------------------------------------------TGCTCTCT------------------CTCTCTATCTCTGTC------------TGTGGCACATACC--ACGAGT-ACTCT-GGCTCTCGTATAATACAACTAT-----------------------------TTG-TCTGT----------------------CTGA--T-------------C------TTCGGCAGAACACCGACT-----A-------CGAC---GATGAT------GAACCAACGCCTGGACCTCGGCTGGAACTCGACCGTCTGCTGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................AGG---------------GAGGGATGGGAGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
droWil2
TTTTTT---TTTT-------------T---------AAAAATGTTCATAATTTTTGCCAGAGAAAATT-------TGCTATAAATAGAC------TTGGGGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTACACATACACATAGAAGGAAATATAT---ATACAAAGAGATATATGTATATATATC------------GGAAGATCTCT------------------CTCTTTTTCCTTGTTTCTCTCTCAGTTT-------GTCTA--ATAA-T-TGTCT-CTC-------------------TTTTTGACTG--TTTTGCAG--CATTCA-ACA-AAAAA----------------------AAAT--A----------------------------------TATC-----A-------AAATAATGATGATTCC---TTGCTGGAATTTG---------------ATTTCTATCTGTTAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTTTT------------CATATTTT-C----AAACGAAAAAT----------TTAAA----------AAAAAAGAATCTATAAATAGGC------AC-----GG----------------------------------------------------------GTCTTTTCATGGCTGC----------CCA----TAGAGAT------CTCAGAGATC-TGAG-A-----GCTCCCAGAGCCAGTGGTGCTACGTTG--TTG------------------------------------------------TAGATAC---CGACTATA----------TGTTTCGAT----------ATCG-----AATTCGAAGT------------TGCAACTCATTCC--GTGA-----------------------------------------------------------------TTGT----------------------TCCG-AT-------------TTGCAG-----GCTTAACTGGGATT-----T-------TAAT---GATGCTGAC---CGCCCCGTGGATC---------------GTCGCCATGCGCTGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----T-------TAAT---GATGCTGAC---CGC.........................................1911.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCGTGGATC---------------GTCGCC..........1811.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT---GATGCTGAC---CGCCC.......................................1811.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
TTTTT------------CATATTTT-CTAATGAAAAAAAAAT-------------------------GTTCAAAGTTCTATAAATAGAC------ATGGCTATACACA-----------------------------------------------------------------------------------------GAGATCGCAGCAG-----------AGCA-----GATCCCCGAGCCAGTGGCGCT-TGTTG--TTGCAATACACATACACACAAACACACACAC---ACACACTTAGATACACCTAAATATACTGTTATATATGGGCCA-ACTGTTTCGAATTACTAACTAATCC-----------------------------------------------------------------------------------------------------------------AA----------------------TTCG-AA-------------TTTCAGACTTTG--TTG---CCATT-----A-------TGAT---GCTGCTGTC---TGATCGCTGGACC---------------TGCACCATGCTCTGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TGAT---GCTGCTGTC---TGATC.......................................1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GCTGCTGTC---TGATCGCTG...................................1911.001100000
droGri2
TTTTTT-----------TATATATC-CCAATGAACAAATATT----------T--------------TTTTAAATATCTATAAATAGAC------GT-----GGGACT-----------TCTGTTG-----GCCGA---------------GAGAGAT-C--------------------------------------------------------------------------CCCGAGCCATACACAGA-TTTTGACTGCTTACACAGACACACACAACCACACACACAACATACACACACTTACACGTAAATGT---GGCCTATATGTGCCAAACTGTTTCGAT----------ATCA-----------------------------------TTTTC--GAAGTT-ATTC---AC-------------------T-------GG--GT---------------TTA-ACTGT----------------------TTCC-AC-------------TTTCAG-TCCG---GCA---CGATT-----A-------TAAT---GATGATGTT---GT---------------------------------AATGATGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:11 PM