ID:

dsi_30061

 Coordinate:

3r:4641223-4641277 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.9 -7.1 -7.0 -6.9

Flybase annnotation

exon [3r_4641014_4641222_-]; CDS [3r_4641014_4641222_-]; CDS [3r_4641278_4641388_-]; exon [3r_4641278_4641388_-]; intron [3r_4641223_4641277_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------##################################################
CAGCACCCATCACGCTCATCAACCAGCGACCTGTGGCCGAGGATGTGCACGTAAGCCAGTTGACTACCCAGTAGTTAATATCAGACTAAGCCAGCTCTTCAGCAGGAATACCCCCAGACAAACAGCCTGAAGAAGAACACCAGCACCTTGAGCAG
**************************************************.........(((.((....(((((((.......))))......)))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 GSM343915
embryo
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
...................................................................................................................................GAAGAACACCAGCACCTTGA.... 20 0 1 1.00 1 0 0 1 0 0 0 0
...................................GCCGAGGATGTGCACGTAAGC................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
........................AGCGACCTGTGGCCGAGG................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0
........................AGCGAACTGTGGCCGAGGATT.............................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
.......................CAGCGACCTGTGGCCGAGGA................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................................GACAAACAGCCTGAAGA...................... 17 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................AATATCAGACTAAGCCAGCTCTTCAG..................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.......................AAGCGAACTGTGGCCGAGGATTT............................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0
........................AGCGAACTGTGGCCGAGGTT............................................................................................................... 20 2 12 0.25 3 3 0 0 0 0 0 0
........................AGCGAACTGTGGCCGAGGTTTT............................................................................................................. 22 3 5 0.20 1 1 0 0 0 0 0 0
........................AGCGAACTGTGGCCGAGGTTT.............................................................................................................. 21 3 16 0.13 2 2 0 0 0 0 0 0
..........................CGAACTGTGGCCGAGGTTA.............................................................................................................. 19 3 20 0.10 2 2 0 0 0 0 0 0
........................AGCGAACTGTGGCCGAGGTTA.............................................................................................................. 21 3 14 0.07 1 1 0 0 0 0 0 0
................................................................................................................................GAACAAGAACACTAGCCCC........ 19 3 17 0.06 1 0 0 0 0 0 0 1

Anti-sense strand reads

GTCGTGGGTAGTGCGAGTAGTTGGTCGCTGGACACCGGCTCCTACACGTGCATTCGGTCAACTGATGGGTCATCAATTATAGTCTGATTCGGTCGAGAAGTCGTCCTTATGGGGGTCTGTTTGTCGGACTTCTTCTTGTGGTCGTGGAACTCGTC
**************************************************.........(((.((....(((((((.......))))......)))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
...........................................................................................................TATGGGGATCTGTTGCTCGG............................ 20 3 3 1.00 3 2 0 0 0 1 0 0 0 0
.....................................................................TCATCAATTATAGTATGTTTCAGT.............................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................GACACCGGCTCCTACACG........................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TGTTTGTCGGACTTCTTCTTGTG............... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................TCGGTTTTCTTCTTTTGGTCGT.......... 22 3 11 0.73 8 0 0 0 8 0 0 0 0 0
..............................................................................................................GGGGGTCAGTTTGACGGA........................... 18 2 7 0.29 2 0 0 0 0 0 2 0 0 0
............................................................................................................ATGGGGATCTGTTACTCGG............................ 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0
.................................ACCGGATCCTACTCGTGC........................................................................................................ 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TCGGACTTCTTCTGG................. 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0
....................TTGGTTGCTGGGCACCG...................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0
..................AGTTTGTCGCTGCACAC........................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0
................................................................................................................GGGTCAGTTTGTCGG............................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
........................ACGCTCGACACCGGCTCC................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:17 AM