ID:

dsi_30009

 Coordinate:

2r:6480721-6480912 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [2r_6480913_6480916_+]; CDS [2r_6480917_6481054_+]; exon [2r_6480633_6480720_+]; five_prime_UTR [2r_6480633_6480720_+]; exon [2r_6480913_6481054_+]; intron [2r_6480721_6480912_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATCTAATAGCCAATTAAACTGAATGACACTAAACCTGACCCACTGGCGGGTGAGCAAATTAGCCCACGCCATTGGCCTAGGCATTCCGGAGGCATGGACTTGTAATTGAATTGGCCATGCCGCCGAAGATGCCGCTCCAGCTCCAGCGGGCTCCAAATCGATTGGGTGCACTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGATTTGAGCCGGCTCACTGTGCACCGGCGGAAGCGAGCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAGCATCCTGC
***********************************........(((.((((((.((......)).)))(((...)))...((((((.(((.(((((((.((.((......)).))))))))).)))..)))))).((((.(((((((((((((((((.....))))).)).)))))))..))))))).......(((((((((.((........)).))).)))))).))).)))....((((........)).)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..................................................................................TACTCAGGAGGCATGGACTTG............................................................................................................................................................................................. 21 3 4 4.75 19 19 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................ATCTCCTGACTGCACTCGTGGCCC............... 24 0 1 3.00 3 0 3 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TGACTGCACTCGTGGCCCT.............. 19 0 1 3.00 3 0 3 0 0 0 0 0 0
.....................................................................................TCAGGAGGCATGGACT............................................................................................................................................................................................... 16 1 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGCGGAAGCGAGCGAAATGAAGCAT..................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0
........................................................................................GAAGGCATGGACTTATGATTGA...................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................TCCTGACTGCACTCGTGGCC................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..................ACTGAATGACACTAAACCTGACC........................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................TTCCGGAGGCACGGACT............................................................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................CATGCCGCCGAAGAAGCCG............................................................................................................................................................. 19 1 1 1.00 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................CTCCTGACTGCACTCGTGGCCC............... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................TCAGGAGGCATGGACTTGGAT.......................................................................................................................................................................................... 21 3 5 0.60 3 3 0 0 0 0 0 0 0
......................................................................................CAGGAGGCATGGACTTGGATT......................................................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0 0
.....................................................................................TCAGGAGGCATGGACTTGGA........................................................................................................................................................................................... 20 2 4 0.50 2 2 0 0 0 0 0 0 0
....................................................................................CTCAGGAGGCATGGACTTG............................................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................ACTCAGGAGGCATGGACT............................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................TCAGGAGGCATGGACTTGG............................................................................................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0 0 0 0
..................................................................................TACTCAGGAGGCATGGACT............................................................................................................................................................................................... 19 3 9 0.22 2 2 0 0 0 0 0 0 0
.......................ATGACACTGAACCTGA............................................................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 0 0 1
..................................................................................TACTCAGGAGGCATGGACTT.............................................................................................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0
....................................................................................CTCAGGAGGCATGGACTTGA............................................................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAGTGGCGCTTCTGAGCA...... 18 3 20 0.15 3 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCACAGGCGGAAGCGATC................................................. 18 2 7 0.14 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................CGAGCGAACTGAAACATC.................................... 18 2 9 0.11 1 0 0 0 1 0 0 0 0
.........................................................................TGGCCTGTGCATTCCGG.......................................................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 2 0 0 0
..........................................................................................AGGCATGGACTTGGATT......................................................................................................................................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCCTCAGTGTGCACCGG............................................................ 17 2 12 0.08 1 0 0 0 0 0 0 0 1
.....................GGATGACACTGAACCTG.............................................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................GCCAGCAGGGGATATA................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................CTTCTGGCCGGCGGAGGA....................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATAGATTATCGGTTAATTTGACTTACTGTGATTTGGACTGGGTGACCGCCCACTCGTTTAATCGGGTGCGGTAACCGGATCCGTAAGGCCTCCGTACCTGAACATTAACTTAACCGGTACGGCGGCTTCTACGGCGAGGTCGAGGTCGCCCGAGGTTTAGCTAACCCACGTGACGACCGGTCGCCTCCTATATTCATGTCCTCCGCTAAACTCGGCCGAGTGACACGTGGCCGCCTTCGCTCGCTTTACTTCGTAGAGGACTGACGTGAGCACCGGGACGACTCGTAGGACG
***********************************........(((.((((((.((......)).)))(((...)))...((((((.(((.(((((((.((.((......)).))))))))).)))..)))))).((((.(((((((((((((((((.....))))).)).)))))))..))))))).......(((((((((.((........)).))).)))))).))).)))....((((........)).)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 GSM343915
embryo
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
......................................................................................................................ACGGAGGCTTCTACGGCGAC.......................................................................................................................................................... 20 2 2 6.50 13 11 2 0 0 0 0 0 0
.......................................................................................................................CGGAGGCTTCTACGGCGAC.......................................................................................................................................................... 19 2 2 2.50 5 4 1 0 0 0 0 0 0
.....................................................................................AGTCCTCCGTACCTGAACCTA.......................................................................................................................................................................................... 21 3 5 2.40 12 12 0 0 0 0 0 0 0
.....................................................................................................................TACGGAGGCTTCTACGGCGAC.......................................................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................GTAAGGCCTCCGTACCTG................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 2 0 0 0 0 0
......................................................................................................................ACGGAGGCTTCTACGGC............................................................................................................................................................. 17 1 2 1.50 3 3 0 0 0 0 0 0 0
..................................................................................ATGAGTCCTCCGTACCTGAAC............................................................................................................................................................................................. 21 3 4 1.25 5 5 0 0 0 0 0 0 0
.....................................................................................AGTCCTCCGTACCTGAAC............................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................ACGGAGGCTTCTACGGCGACG......................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................TTACGGAGGCTTCTACGGCGACG......................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................ACGGAGGCTTCTACGGCGA........................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................AAGTCCTCCGTACCTGAACCTA.......................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................ACGGAGGCTTCTACGGCG............................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GCGGTAACCAGAAACGTAAGGC........................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0
....................................................................................................................ATACGGAGGCTTCTACGGCGAC.......................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................TAACCGGTCAGGCGGCTTCT.................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................CGGCGACTTCTACGGCGA........................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 1 0 0 0
.......................................................................................................................CGGAGGCTTCTACGGC............................................................................................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................ACCGGGATGAGTCCTAGGAC. 20 3 3 0.33 1 0 0 0 0 0 1 0 0
.....................................................................................AGTCCTCCGTACCTGAACCT........................................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................................................................................AACGGAGGCTTCTACGGCGAC.......................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.........................................................................................................................GAGGCTTCTACGGCGAC.......................................................................................................................................................... 17 2 20 0.20 4 0 3 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................CCGGCATGACTCCTAGGAC. 19 3 11 0.18 2 0 0 0 0 1 1 0 0
........................................................................................................................GGAGGCTTCTACGGCGAC.......................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
........................................................................................................................GGAGGCTTCTACGGC............................................................................................................................................................. 15 1 13 0.15 2 0 2 0 0 0 0 0 0
.........................................................................................................................GAGGCTTCTACGGCGACG......................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCATGTCCACCGCTAGTCT................................................................................ 19 3 8 0.13 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................TCGCTTTCCTTGGTCGAGGA................................ 20 3 11 0.09 1 0 0 0 1 0 0 0 0
.........................................................................................................................GAGGCTTCTACGGCG............................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 0 1 0
........................................................................................................................AGAGGCTTCTACGGCGA........................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0
......................................................................................................................ACGGAGGCTTCTACG............................................................................................................................................................... 15 1 15 0.07 1 1 0 0 0 0 0 0 0
.........................................................................................................................GTGGCTTCTACGGCG............................................................................................................................................................ 15 1 18 0.06 1 0 0 0 0 0 0 0 1
.........................................................................................................................GAGGCTTCTACGGCGACTT........................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................GGGGCTTCTACGGCGAC.......................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................GGCTTCTACGGCGAC.......................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6480671-6480962 + dsi_30009 TATCTA-----ATAGCCAATTAAACTGAATGACAC---------TAAACCTGACCCACTGGCGG------GT-GAGCAAATTAGCCCACGCCATTG-----GCCTAGGCAT---T---------------------------------CCGGA---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCCGCCGAAGATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CAGCGGGCTCCAAATCGATTGGGTGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGC
droSec2 scaffold_1:3311732-3312023 + TATCTA-----ATAGCCAATTAAACTGAATGACCC---------TAAACCAGACCCACTGGCGG------GT-GAGCAAATTAGCCCACGACATTG-----GTCTAGGCAT---T---------------------------------CCGGA---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCTGCCGAAGATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CAGCGGGCTCCAAATCGATTGGGTGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCTTGC
dm3 chr2R:5702774-5703065 + TATCTA-----ATAGCCAATTAAACTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GAGCAAATTAGCCCACGACATTG-----GCGTAGGCAT---T---------------------------------CCGGC---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCTGCCGAAGATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CAGCGAGCTCCAAATCGATTGGGCGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGC
droEre2 scaffold_4929:8663222-8663513 - der_150 TACCTA-----ATAGCCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GACCAAATTAGCCCACGACATTG-----GCGTAGGCAT---T---------------------------------CCGGC---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCCGCTGAAGATG------------------------CC-GC-TCCA-------------------CCTC---------------------------------------CGACGGGCTCCAAATCGATTGGGTGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTCAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---ACAAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGC
droYak3 2L:18327966-18328261 + TATCTA-----ATAGCCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GACCAAATTAGCCCACGACATTGCCTTGGCGTGGGCAT---T---------------------------------CCGGA---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCCGCCGAAGATG------------------------CC-GC-TCCA-------------------CCTC---------------------------------------CAACGGGCTCCAAATCGATTGGGCGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-CGGAG--C-CGG---------------CCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGC
droEug1 scf7180000409209:464399-464686 - TAGCTA-----ATAGACAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GAACAAATTAGCCCACGACATTG-----GTGTAGGCAT---T---------------------------------CCAGA---GGCATGAAG-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CC-TC-TTTA-------------------CCTC---------------------------------------CAATGGATTCTAAATCGATTGGGCTCA----------------------CTGCTTGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGGA--TCCGG---------------TCACTGTGCACCGGCG----GTGA---TCGAAATGAAGCATCTACTGACTGCACTCGTGGCGCTGCTGAG---CATCCTGC
droBia1 scf7180000301506:1003878-1004168 - TATCTA-----ATAGTCAATTAAACTGAATGACCC---------TAAACCTGACCCACTTGCGG------GT-GAACAAATTAGCCCGCGACATTG-----GCGCAGGCAT---T---------------------------------CCTGA---GACCTGAAC-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CC-GC-TCCG-------------------CCGG---------------------------------------CGATGGGTTCCGAATCGATTGGAGCCA----------------------CTGCTTGGCAGCGGAGGATATAAGTACAGGAGGCGAT-TCGAA--CCCGG---------------CCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTACTAACCGCACTCGTGGCCCTGCTGAG---CGTCCTGC
droTak1 scf7180000415870:582424-582717 - TAGCTA-----ATAGTCAATTAAATTGAATGACCC---------TCAACCTGACCCACTTGCGG------GT-GAACAAATTAGCCCACGACATTG-----GCGCAGGCAT---T---------------------------------CCGGA---GGCCTGAAC-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CC-GC-CGCA-------------------CCGC--------------------------------C------CAAGGGGTTCCAAATCGATTGGACCCA----------------------CTGCCCCAAGGCGGAGGATATAAGTACAGGAGGCGAT-CTGAAGCTCCGG---------------CCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTACTGACCGCACTCGTGGCCCTGCTGAG---CATCCTGC
droEle1 scf7180000491107:1396378-1396678 - TAGCTA-----ATAGGCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------CT-GAACAAATTGGCCCACGACATTG-----GCGTTGGCAT---T---------------------------------CCGGA---GGCATGAAC-------TTGTAATTGAATTAGCCA----------------GATG------------------------CC-GG-ACCAGCACCTCCGATGTTGCGATATTC---------------------------------------CGATGGGTTGCAGATCGATTGGACGCA----------------------CTGCTTGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TCGAA--GCCGG---------------ACACTGTGCACCGGCGGCA-GCCA---TCCAAATGAAGCATCTACTGACTGCACTCGTGGCCCTGCTGGG---CATCCTGC
droRho1 scf7180000777217:607287-607583 + TAGCTA-----ATAGGCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------CT-GAACAAATTAGCCCACGACATTG-----GCGCAGGCAT---T---------------------------------CCGGA---GGCATGAAC-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CCCGG-AGCA---CCTCCGAT--------GTTC---------------------------------------CAATGGGTGCCCAATCGATTGGACAGA----------------------CTG----CCAGCGGAGGATATAAGTACAGGAGGCGAT-TCGAT--CACGG---------------ACACTGTGCACCGGCGGAAGGCGA---TCGAGATGAAGCACCTACTGACCGCACTCGTGGCCCTGCTGAG---CATCCTGC
droFic1 scf7180000453858:1027320-1027604 - TAGCCA-----ATAGGCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGA------GC-CAGCTAGTCAGCT---------------ACTCAGGCAT---TC--CT----------------------------CCGGA---GCCACGAACTCGTAATTCGTAATTGAATTAGCCG-------GACGTTAGGGATG------------------------CCCGA-TGCT-------------------CCGC---------------------------------------AAGAGGAGTC-CAATCGATTGGACGCA----------------------CTGCCGCCCGGCGGAGGATACAAGTAGAGGAGTGGAA-CCGCCGCTCCGG---------------ACAGTCTGTA--------G-GCCG---CCGCGATGAAGCACCTACTCACCGCACTCGTCACCCTGCTCAG---CCTGCTGC
droKik1 scf7180000302476:1114745-1115065 + CACCTAATGAATTTTCCAATTAAATTGAATGACCC---------TAAACCTGACCCACAGACAC-ACAGAGTGGAACAAATTAGCCCACGACATTG-----GC---GGCAT---T---------------------------------CCGCA---GGCATGAAC-------TTGTAATTGAATTAGCCA-------GACGAC------GTCCAGGGCGATGGGAGTCGTGGTGCC-TGGACCA-------------------CCTC---------------------------------------CGATAAAGCCGGAATCGATTGGACGCA----------------------CTGCTGGCCAGCAGAGGATATAAGTACAGGAGGCGTC-CTCTGATTCCGG---------------CCACTGTGCATAGGTGGATCGACA---GCGATATGAAGCATCTACTGGCAGCACTAGTGACCCTGCTGAC---AGTCCTGC
droAna3 scaffold_13266:12973081-12973386 + TAGCTAATGAAATATTCAATTTAATTGAATGACCC---------TAAACCTGACCCACAGACGA------GT-GACCAAATTAGCCCGCGACATTG-----GCG-ACGCAT---A---------------------------------CCAGA---GGCTTGAAC-------TTGTAATTGAATTACTCTTGGGAGGGGCATTAGGGATG------------------------GA-TG-CC-------------------------CCAA--------------CA---------GCCACACATTAAAGAAAACCTTAATTGATTCTCCACA----------------------TTGAT----TGCGAAGGATATAAGTACAGGAGACGGC-T---------GGCCACTTTGGGCCATCATACAGTGCACCGG--------------CGATATGAAGCACCTACTGACTGCACTCGTGGCCATGATGAG---TGTCCTGC
droBip1 scf7180000396730:949792-950097 - TAGCTAATGAAATATTCAATTTAATTGAATGACCC---------TAAACCTGACCCACAGACGA------CT-GACCAAATTAGCCCGCGACATTG-----GCG-AAGCAT---A---------------------------------CCAGA---GGCTTGAAC-------TTGTAATTGAATTACCCAGGGGAGGGGCATTAGGGATG------------------------CA-TG-CC-------------------------CCAA--------------AT---------GCTGCACATTAAAGAAAACCTTAATTGATTCTCCACA----------------------TTGATT----GTAAAGGATATAAGTAGAGGAGACGGT-C---------GGCCACTTTGGGCCATCATACGGTGCACCGG--------------CGAGATGAAGCATCTACTGACTGCACTCGTGGCCATGATGAG---TGTCCTGC
dp5 3:8775811-8776165 - TAGCTGAACGAATACTCAATTGAATTGAATGACCC---------TAAACCTGACCCACAAACGA------GA-CAGCAAATTAGCCCACGACATTG-----CCCCATGGAATGC-----TATGGAATGTACGCAAT------------CTTGACTGGCCATG-GG-------TGGTAATCGAATTACGCTG------GCCATTAGGGATG------------------------CC-TG-GGCA-------------------AGTG-CAG--------------CA---------GGCAGA------TAAGACTGGCAATTGATTGGCTGCATAACGAATGCATTCTGGGGCACCTCCACGCTAGGGGAGGATATAAGTACAGGAGGGCGGCCAGCG-GC-----CAGAGC--------ACAGTGACCA----CGGCA-TCGAGGAAGGTCATGAAGCATCTACTGACTGCACTCGTGGTGGTGCTCTGTGCCGCCCTTC
droPer2 scaffold_4:2659905-2660259 - TAGCTGAACGAATGCTCAATTGAATTGAATGACCC---------TAAACCTGACCCACAAACGA------GA-CAGCAAATTAGCCCACGACATTG-----CCCCATGGAATGC-----TATGGAATGTACGCAAT------------CTTGACTGGCCATG-GG-------TGGTAATCGAGTTACCCTG------GCCATTAGGGATG------------------------CC-TG-GGCA-------------------AGTG-CAG--------------CA---------GGCAGA------TAAGACTGGCAATTGATTGGCTGCATAACGAATGCATTCTGGGGCACCTCCACGCTAGGGGAGGATATAAGTACAGGAGGGCGGCCAGCG-GC-----CAGAGC--------ACAGTGACCA----CGGCA-TCGAGGAAGGTCATGAAGCATCTACTGACTGCACTCGTGGTGGTGCTGAGTGCCGCCCTTC
droWil2 scf2_1100000004514:3690142-3690495 + AAACGA----AATTCCCAATTAACTTGAATGACCCAACGGCCTCAAAAGCTGACCCACTAATGACAACGAG-----------------------TG-----GTCTGTGTAGTGTTCCGTTCTGGAATGTGCG--ATCACCGACGAGAGTCAAA---GTCATGGTT-------GGGTAATTGAATTAGACATTTG---ACCATTTGAAATG------------------------GT-CT-GGC------------------------CCTACAAGACCAGAGTGGCAGACTGTGGACAGA------GATAAGATTTCAAATTGATTGGCCGTACAA-------------------TTGCATGGTAGGAGAGGATATAAGTAGAGGAGAGCCATCAACG--G-----GAATGG--------ACAAACAGCATTTGC---T-GGGA---ACGAGATGAAGTATCTAGTACTTGGGCTATTGACACTGTTGAG---TGTTTTGC
droVir3 scaffold_12875:6037816-6037936 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------TTGCATGGTAGGGGAGGATATAAGTACAGGAGGGAA--CAGCG--C-----CAGAGCACA-----CAATGGTGCATTGGTA------AG---GAGAGATGAAGCACATCATAATTGCGATCATTGCCGTGCTGAG---TGTCCTGC
droMoj3 scaffold_6496:24005505-24005625 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------TTGCACGCTAGGAGAGGATATAAGTACAGGAGC-GAG-CAGCG--C-----CAGAGCACA-----CAATGGTGCATTGGT------CAG---GCGAGATGAAGCACATCATAGTTGTGATCATTGCCGTGCTGAG---TGTCCTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TATCTA-----ATAGCCAATTAAACTGAATGACAC---------TAAACCTGACCCACTGGCGG------GT-GAGCAAATTAGCCCACGCCATTG-----GCCTAGGCAT---T---------------------------------CCGGA---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCCGCCGAAGATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CAGCGGGCTCCAAATCGATTGGGTGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCTGACTGCACTCGTGGCCC..................2413.00303000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGCACTCGTGGCCCT.................1913.00303000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAA-GCGA---GCGAAATGAAGCAT........................................2511.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACTGCACTCGTGGCC...................2011.00101000000000000000
.......................ACTGAATGACAC---------TAAACCTGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGACTGCACTCGTGGCCC..................2211.00101000000000000000
droSec2
TATCTA-----ATAGCCAATTAAACTGAATGACCC---------TAAACCAGACCCACTGGCGG------GT-GAGCAAATTAGCCCACGACATTG-----GTCTAGGCAT---T---------------------------------CCGGA---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCTGCCGAAGATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CAGCGGGCTCCAAATCGATTGGGTGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCTTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---GCGAAATGAAGCATCTCCTGA.................................2411.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GCGA---GCGAAATGAAGCATCTCCT...................................2611.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGCACCGGCGGAA-GCG..........................................................2011.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATGAAGCATCTCCTGAC................................2111.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGCATCTCCTGACTGCACT..........................2411.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCGGAA-GCGA---GCGAAATGAAGC..........................................2511.0010100
dm3
TATCTA-----ATAGCCAATTAAACTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GAGCAAATTAGCCCACGACATTG-----GCGTAGGCAT---T---------------------------------CCGGC---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCTGCCGAAGATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CAGCGAGCTCCAAATCGATTGGGCGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCACCGGCGGAA-GCGA---GC....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GAGGATATAAGTACAGGAGGC................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TGACCC---------TAAACCTGACCCACTGGCGG------GT-............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCACCGGCGGAA-GCGA---G.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCACTCGTGGCCCTGCT..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................GCA----------------------CTGCTGGCCAGCGGAGGATATAAG..........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................GATG------------------------CC-GC-TCCA-------------------GCTC---------------------------------------CG.................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................C-------TTGTAATTGAATTGGCCAT------GT..............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCGGCGGAA-GCGA---GC....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGGCCAGCGGAGGATATAAGTACAGGA...................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................AT------GCTGCCGAAGATC------------------------...........................................................................................................................................................................................................................................................................15120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TACCTA-----ATAGCCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GACCAAATTAGCCCACGACATTG-----GCGTAGGCAT---T---------------------------------CCGGC---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCCGCTGAAGATG------------------------CC-GC-TCCA-------------------CCTC---------------------------------------CGACGGGCTCCAAATCGATTGGGTGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTCAG--CCGG---------------CTCACTGTGCACCGGCGGAA-GCGA---ACAAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................CGTAGGCAT---T---------------------------------CCGGC---GGCATGG..................................................................................................................................................................................................................................................................................................................................................2219.0090000720
.......................................................................................................GTAGGCAT---T---------------------------------CCGGC---GGCATGG..................................................................................................................................................................................................................................................................................................................................................2113.0032000100
......................................................................................................CGTAGGCAT---T---------------------------------CCGGC---GGCATGGA.................................................................................................................................................................................................................................................................................................................................................2313.0030000210
........................................................................................................TAGGCAT---T---------------------------------CCGGC---GGCATGG..................................................................................................................................................................................................................................................................................................................................................2012.0020000200
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCGTGGCCCTGCTGAG---CAT.....2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATCTCCTGACTGCACTCGTGGC....................2611.0010000100
.......................................................................................................GTAGGCAT---T---------------------------------CCGGC---GGCATGGA.................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.............................................................................................................................................................................................AT------GCCGCTGAAGATG------------------------CC-GC-TCCT-------------------T.............................................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................................................................AT------GCCGCTGAAGATG------------------------CC-GC-TCC..................................................................................................................................................................................................................................................................2211.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---ACAAAATGAAGCATCT......................................1911.0010000100
droYak3
TATCTA-----ATAGCCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GACCAAATTAGCCCACGACATTGCCTTGGCGTGGGCAT---T---------------------------------CCGGA---GGCATGGAC-------TTGTAATTGAATTGGCCAT------GCCGCCGAAGATG------------------------CC-GC-TCCA-------------------CCTC---------------------------------------CAACGGGCTCCAAATCGATTGGGCGCA----------------------CTGCTGGCCAGCGGAGGATATAAGTACAGGAGGCGAT-CGGAG--C-CGG---------------CCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................AATTAGCCCACGACATTGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
.....................................................................................................................................................................................................................................................................................................................................TGGGCGCA----------------------CTGCTGGCCAGCG.....................................................................................................................................2111.00101000000000
droEug1
TAGCTA-----ATAGACAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------GT-GAACAAATTAGCCCACGACATTG-----GTGTAGGCAT---T---------------------------------CCAGA---GGCATGAAG-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CC-TC-TTTA-------------------CCTC---------------------------------------CAATGGATTCTAAATCGATTGGGCTCA----------------------CTGCTTGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TTGGA--TCCGG---------------TCACTGTGCACCGGCG----GTGA---TCGAAATGAAGCATCTACTGACTGCACTCGTGGCGCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotal
No Reads
droBia1
TATCTA-----ATAGTCAATTAAACTGAATGACCC---------TAAACCTGACCCACTTGCGG------GT-GAACAAATTAGCCCGCGACATTG-----GCGCAGGCAT---T---------------------------------CCTGA---GACCTGAAC-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CC-GC-TCCG-------------------CCGG---------------------------------------CGATGGGTTCCGAATCGATTGGAGCCA----------------------CTGCTTGGCAGCGGAGGATATAAGTACAGGAGGCGAT-TCGAA--CCCGG---------------CCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTACTAACCGCACTCGTGGCCCTGCTGAG---CGTCCTGCSizeHit CountTotal NormTotal
No Reads
droTak1
TAGCTA-----ATAGTCAATTAAATTGAATGACCC---------TCAACCTGACCCACTTGCGG------GT-GAACAAATTAGCCCACGACATTG-----GCGCAGGCAT---T---------------------------------CCGGA---GGCCTGAAC-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CC-GC-CGCA-------------------CCGC--------------------------------C------CAAGGGGTTCCAAATCGATTGGACCCA----------------------CTGCCCCAAGGCGGAGGATATAAGTACAGGAGGCGAT-CTGAAGCTCCGG---------------CCACTGTGCACCGGCGGAA-GCGA---GCGAAATGAAGCATCTACTGACCGCACTCGTGGCCCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
TAGCTA-----ATAGGCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------CT-GAACAAATTGGCCCACGACATTG-----GCGTTGGCAT---T---------------------------------CCGGA---GGCATGAAC-------TTGTAATTGAATTAGCCA----------------GATG------------------------CC-GG-ACCAGCACCTCCGATGTTGCGATATTC---------------------------------------CGATGGGTTGCAGATCGATTGGACGCA----------------------CTGCTTGCCAGCGGAGGATATAAGTACAGGAGGCGAT-TCGAA--GCCGG---------------ACACTGTGCACCGGCGGCA-GCCA---TCCAAATGAAGCATCTACTGACTGCACTCGTGGCCCTGCTGGG---CATCCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
TAGCTA-----ATAGGCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGG------CT-GAACAAATTAGCCCACGACATTG-----GCGCAGGCAT---T---------------------------------CCGGA---GGCATGAAC-------TTGTAATTGAATTAGCCA-------GACGTTAGGGATG------------------------CCCGG-AGCA---CCTCCGAT--------GTTC---------------------------------------CAATGGGTGCCCAATCGATTGGACAGA----------------------CTG----CCAGCGGAGGATATAAGTACAGGAGGCGAT-TCGAT--CACGG---------------ACACTGTGCACCGGCGGAAGGCGA---TCGAGATGAAGCACCTACTGACCGCACTCGTGGCCCTGCTGAG---CATCCTGCSizeHit CountTotal NormTotal
No Reads
droFic1
TAGCCA-----ATAGGCAATTAAATTGAATGACCC---------TAAACCTGACCCACTGGCGA------GC-CAGCTAGTCAGCT---------------ACTCAGGCAT---TC--CT----------------------------CCGGA---GCCACGAACTCGTAATTCGTAATTGAATTAGCCG-------GACGTTAGGGATG------------------------CCCGA-TGCT-------------------CCGC---------------------------------------AAGAGGAGTC-CAATCGATTGGACGCA----------------------CTGCCGCCCGGCGGAGGATACAAGTAGAGGAGTGGAA-CCGCCGCTCCGG---------------ACAGTCTGTA--------G-GCCG---CCGCGATGAAGCACCTACTCACCGCACTCGTCACCCTGCTCAG---CCTGCTGCSizeHit CountTotal NormTotal
No Reads
droKik1
CACCTAATGAATTTTCCAATTAAATTGAATGACCC---------TAAACCTGACCCACAGACAC-ACAGAGTGGAACAAATTAGCCCACGACATTG-----GC---GGCAT---T---------------------------------CCGCA---GGCATGAAC-------TTGTAATTGAATTAGCCA-------GACGAC------GTCCAGGGCGATGGGAGTCGTGGTGCC-TGGACCA-------------------CCTC---------------------------------------CGATAAAGCCGGAATCGATTGGACGCA----------------------CTGCTGGCCAGCAGAGGATATAAGTACAGGAGGCGTC-CTCTGATTCCGG---------------CCACTGTGCATAGGTGGATCGACA---GCGATATGAAGCATCTACTGGCAGCACTAGTGACCCTGCTGAC---AGTCCTGCSizeHit CountTotal NormTotal
No Reads
droAna3
TAGCTAATGAAATATTCAATTTAATTGAATGACCC---------TAAACCTGACCCACAGACGA------GT-GACCAAATTAGCCCGCGACATTG-----GCG-ACGCAT---A---------------------------------CCAGA---GGCTTGAAC-------TTGTAATTGAATTACTCTTGGGAGGGGCATTAGGGATG------------------------GA-TG-CC-------------------------CCAA--------------CA---------GCCACACATTAAAGAAAACCTTAATTGATTCTCCACA----------------------TTGAT----TGCGAAGGATATAAGTACAGGAGACGGC-T---------GGCCACTTTGGGCCATCATACAGTGCACCGG--------------CGATATGAAGCACCTACTGACTGCACTCGTGGCCATGATGAG---TGTCCTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCCATGATGAG---TGTCCTGC2311.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGTGGCCATGATGAG---TGTCCTGC2811.001000010
droBip1
TAGCTAATGAAATATTCAATTTAATTGAATGACCC---------TAAACCTGACCCACAGACGA------CT-GACCAAATTAGCCCGCGACATTG-----GCG-AAGCAT---A---------------------------------CCAGA---GGCTTGAAC-------TTGTAATTGAATTACCCAGGGGAGGGGCATTAGGGATG------------------------CA-TG-CC-------------------------CCAA--------------AT---------GCTGCACATTAAAGAAAACCTTAATTGATTCTCCACA----------------------TTGATT----GTAAAGGATATAAGTAGAGGAGACGGT-C---------GGCCACTTTGGGCCATCATACGGTGCACCGG--------------CGAGATGAAGCATCTACTGACTGCACTCGTGGCCATGATGAG---TGTCCTGCSizeHit CountTotal NormTotal
No Reads
dp5
TAGCTGAACGAATACTCAATTGAATTGAATGACCC---------TAAACCTGACCCACAAACGA------GA-CAGCAAATTAGCCCACGACATTG-----CCCCATGGAATGC-----TATGGAATGTACGCAAT------------CTTGACTGGCCATG-GG-------TGGTAATCGAATTACGCTG------GCCATTAGGGATG------------------------CC-TG-GGCA-------------------AGTG-CAG--------------CA---------GGCAGA------TAAGACTGGCAATTGATTGGCTGCATAACGAATGCATTCTGGGGCACCTCCACGCTAGGGGAGGATATAAGTACAGGAGGGCGGCCAGCG-GC-----CAGAGC--------ACAGTGACCA----CGGCA-TCGAGGAAGGTCATGAAGCATCTACTGACTGCACTCGTGGTGGTGCTCTGTGCCGCCCTTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................GAATGTACGCAAT------------CTTGACTG.........................................................................................................................................................................................................................................................................................................................................................2111.0011000000000
..............................................................................................................................TGTACGCAAT------------CTTGACTGGCC......................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TAGCTGAACGAATGCTCAATTGAATTGAATGACCC---------TAAACCTGACCCACAAACGA------GA-CAGCAAATTAGCCCACGACATTG-----CCCCATGGAATGC-----TATGGAATGTACGCAAT------------CTTGACTGGCCATG-GG-------TGGTAATCGAGTTACCCTG------GCCATTAGGGATG------------------------CC-TG-GGCA-------------------AGTG-CAG--------------CA---------GGCAGA------TAAGACTGGCAATTGATTGGCTGCATAACGAATGCATTCTGGGGCACCTCCACGCTAGGGGAGGATATAAGTACAGGAGGGCGGCCAGCG-GC-----CAGAGC--------ACAGTGACCA----CGGCA-TCGAGGAAGGTCATGAAGCATCTACTGACTGCACTCGTGGTGGTGCTGAGTGCCGCCCTTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAACGA----AATTCCCAATTAACTTGAATGACCCAACGGCCTCAAAAGCTGACCCACTAATGACAACGAG-----------------------TG-----GTCTGTGTAGTGTTCCGTTCTGGAATGTGCG--ATCACCGACGAGAGTCAAA---GTCATGGTT-------GGGTAATTGAATTAGACATTTG---ACCATTTGAAATG------------------------GT-CT-GGC------------------------CCTACAAGACCAGAGTGGCAGACTGTGGACAGA------GATAAGATTTCAAATTGATTGGCCGTACAA-------------------TTGCATGGTAGGAGAGGATATAAGTAGAGGAGAGCCATCAACG--G-----GAATGG--------ACAAACAGCATTTGC---T-GGGA---ACGAGATGAAGTATCTAGTACTTGGGCTATTGACACTGTTGAG---TGTTTTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGGCTATTGACACTGTTGA............2312.00210100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACACTGTTGAG---TGT.....2011.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATTGACACTGTTGAG---T.......1911.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTACTTGGGCTATTGACACTGTTGA............2811.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---T-GGGA---ACGAGATGAAGTATC.......................................2411.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGGCTATTGACACTGTTGAG---........2411.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGC---T-GGGA---ACGAGATGAAGT..........................................2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTATTGACACTGTTGA............2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTATTGACACTGTTGA............2111.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTATTGACACTGTTGAG---TGTTTTG.2711.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATTTGC---T-GGGA---ACGAGATGAAGT..........................................2611.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGCTATTGACACTGTTGA............2211.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGC---T-GGGA---ACGAGATGAA............................................2111.00100100
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------TTGCATGGTAGGGGAGGATATAAGTACAGGAGGGAA--CAGCG--C-----CAGAGCACA-----CAATGGTGCATTGGTA------AG---GAGAGATGAAGCACATCATAATTGCGATCATTGCCGTGCTGAG---TGTCCTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTGCTGAG---TGTCCTGC20113.00130000000001000000000000000000000001000000200000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTA------AG---GAGAGATGAAGC..........................................2119.009000003000100000000000000000000000400000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTGCCGTGCTGAG---T.......1919.009000000000000000000000000000000000700000200000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGTA------AG---GAGA..................................................1816.006000003010100000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTGCTGAG---TGTCCTG.1915.005000000000000000000000000000000000500000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAAGC..........................................2315.005000002000000000000000000000000000300000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTA------AG---GAGAGATGAAGC..........................................1815.005000005000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTA------AG---GAGAGATGAAGCAC........................................2315.005000002000000000000000000000000000300000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTA------AG---GAGAGATGAAGC..........................................1914.004000003000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATG..............................................1914.004000004000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTA------AG---GAGAGATGAAGCA.........................................2214.004000000000000000000000000000000000400000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGTA------AG---GAGAGATGAA............................................2413.003000002000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAAGCA.........................................2413.003000000000000000000002000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTGGTA------AG---GAGAGAT...............................................2013.003000001000000000000000000000002000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGTGCTGAG---TGTCC...1913.003010001000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCCGTGCTGAG---TGT.....2013.003000000000000000000000000000000000300000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTA------AG---GAGAGATGAAG...........................................2013.003000001000000000000000000000000000200000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGTGCTGAG---TGTCCTGC2213.003000000000000000000000000000000000300000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGTA------AG---GAGAGATGAAGC..........................................2612.002000001000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------AG---GAGAGATGAAGCA.........................................1812.002000000000000000000000000000000000200000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAAG...........................................2212.002000002000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTGCATTGGTA------AG---GAGA..................................................2112.002000002000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCCGTGCTGAG---T.......1812.002000001000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTGCTGAG---TGTCCT..1812.002000000000100000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTA------AG---GAGAGATGAAGC..........................................2012.002000000000200000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTA------AG---GAGAGATGAAGCA.........................................1912.002000002000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGCACATCATAATTGCGAT..........................2512.002000000000000000000000000000000000200000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGTGCTGAG---TGTCCT..1912.002000000000000000000000000000000000200000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAAGCAC........................................2512.002000000000000000000000000000000000200000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGCGATCATTGCCGTGCTG.............2411.001000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCATTGCCGTGCTG.............1811.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGTGCTGAG---TGTC....1821.002000001000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAA............................................2111.001000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCCGTGCTGAG---TGTCC...2211.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGAAGCACATCATAATTGCG............................2411.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTGCCGTGCTGAG---TGT.....2111.001000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGTA------AG---GAGAGATGAAGC..........................................2211.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGTA------AG---GAGAGATGAAG...........................................2511.001000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATCATAATTGCGATCATTGCC...................2411.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTA------AG---GAGAGATGAAG...........................................1811.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTGCCGTGCTGAG---TGTCCTGC2611.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGTA------AG---GAGAGATG..............................................2211.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTA------AG---GAGAGATGAAGCAC........................................2111.001000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAATTGCGATCATTGCC...................2111.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTGCTGAG---TGTCCTG.1811.001000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAATGGTGCATTGGTA------AG---GAGA..................................................2311.001000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAAGCACATC.....................................2811.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTA------AG---GAGAGATGA.............................................1811.001000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCATTGCCGTGCTGAG---TGTC....2311.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTGCCGTGCTGAG---TGTC....2211.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATTGGTA------AG---GAGAGAT...............................................2111.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGTA------AG---GAGAGATGAAGCACAT......................................2611.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTA------AG---GAGAGATGAAGCACAT......................................2311.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCCGTGCTGAG---TGTC....2111.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCCGTGCTGAG---TGTCCTGC2511.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTGCCGTGCTGAG---TGTCC...2311.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGATCATTGCCGTGCTGAG---TGTC....2511.001000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCATTGGTA------AG---GAGAGAT...............................................2311.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGTA------AG---GAGAGATGA.............................................1911.001000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCATTGGTA------AG---GAGA..................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGTACAGGAGGGAA--CAGCG--C-----CAGAGCA........................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCCGTGCTGAG---TGTCCT..2111.001000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTA------AG---GAGAGATGAAGCAC........................................2211.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGAT...............................................1811.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCCGTGCTGAG---TGTCCTGC2311.001000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCATTGCCGTGCTGAG---T.......2011.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATTGCGATCATTGCCGT.................2111.001000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGATCATTGCCGTGC...............1911.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATGAAGCACATCATAATTGC.............................2511.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGAAGCACAT......................................2711.001000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGTA------AG---GAGAGATGA.............................................2011.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGTGCTGAG---TGTCCT..2011.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTA------AG---GAGAGATGAAGCAC........................................2011.001000000000100000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGTGCTGAG---TGTCCTGC2111.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGATCATTGCCGTGCTGA............2211.001000001000000000000000000000000000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------TTGCACGCTAGGAGAGGATATAAGTACAGGAGC-GAG-CAGCG--C-----CAGAGCACA-----CAATGGTGCATTGGT------CAG---GCGAGATGAAGCACATCATAGTTGTGATCATTGCCGTGCTGAG---TGTCCTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAGCACATCATAGTTGTGAT..........................2515.005000104
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGAAGCACATCATAGTTGTGAT..........................2612.002000002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTTGTGATCATTGCCGT.................2112.002000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGGT------CAG---GCGAGAT...............................................1912.002000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCATTGGT------CAG---GCG...................................................1912.002000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGTGCTGAG---TGTCCTG.2112.002000101
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCACATCATAGTTGTGATC.........................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGT------CAG---GCGAGATGA.............................................1811.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTGCCGTGCTGAG---T.......2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTGGT------CAG---GCGAGA................................................1911.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATCATTGCCGTGCTGAG---T.......2311.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGT------CAG---GCGAGATGAAGCACAT......................................2411.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGGT------CAG---GCGAGATG..............................................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGAAGCACATCATAGTTGTGATC.........................2711.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATCATTGCCGTGCT..............2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---GCGAGATGAAGCACATC.....................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGGT------CAG---GCGAGATGA.............................................2111.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCATTGGT------CAG---GCGAGATGAA............................................2611.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTGCTGAG---TGTCCTG.1911.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGT------CAG---GCGAGATGAAGC..........................................2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAGTTGTGATCATTGCCGTGCTGA............2811.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAGTTGTGATCATTGCCGT.................2311.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGT------CAG---GCGAGATGAAGCA.........................................2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCATAGTTGTGATCATTGCCGT.................2511.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGTGATCATTGCCGTGCTGAG---T.......2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTGCCGTGCTGAG---TGTC....2411.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGTGATCATTGCCGT.................2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGTGATCATTGCCGTG................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGAAGCACATCATAGTTGTGA...........................2511.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATCATTGCCGTG................1811.001000001

Generated: 06/11/2015 at 06:28 PM