ID:

dsi_29996

 Coordinate:

3l:11585601-11585750 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11584618_11585600_-]; exon [3l_11584247_11585600_-]; intron [3l_11585601_11587164_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGAAATCCAAGATAAGTGGCTGTACTTAAATGTAGCAATAGATTGGGAAACGAGTTCAGTACGCGTTGTGTTCCGGAACAGTTGGCGGTCTTACCAAAATGAGAGGTACTAAAAGCGGAGTGATGAATGACCAGAGACTAAAGATAGCTCATCGTAGTTCCGCCATGTGGATTCCACTTGGGTGTCATTTTGGCCATACTCGCGGAGATTAGAGGATTTTCGATGGAGGACAAGTGCAAATTGTGGGCT
**************************************************........((..(((....((((....))))....)))..))..(((((((((.............(((((..((((.......(((.(((....)))))).))))..)))))(((.((((...)))).)))...)))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
..............................CTGTTGCAATAGATTGGGA......................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................TGTTGCAATAGATTGGGA......................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................TATCTGTTGCAATAGATTGGGA......................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAATTAGAGGATCTTCGAT......................... 19 2 7 0.86 6 0 0 4 0 0 1 0 1 0 0
................................GTTGCAATAGATTGGGA......................................................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................GAACAGGTGGCGGTGTAACC.......................................................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TGCAAATTGTGGGCT 15 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0
..................................TGCAATAGATTGGGA......................................................................................................................................................................................................... 15 1 19 0.37 7 7 0 0 0 0 0 0 0 0 0
.................................TTGCAATAGATTGGGA......................................................................................................................................................................................................... 16 1 6 0.33 2 2 0 0 0 0 0 0 0 0 0
............................................................................GAACAGTTGCCGGTCTT............................................................................................................................................................. 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAAAGATAGCTTACCGTAGTT.......................................................................................... 21 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
................................GTTGCAATAGATTGGG.......................................................................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................GTTGCAATAGATTGGGAT........................................................................................................................................................................................................ 18 2 10 0.20 2 2 0 0 0 0 0 0 0 0 0
.................................TTGCAATAGATTGGGAT........................................................................................................................................................................................................ 17 2 20 0.20 4 4 0 0 0 0 0 0 0 0 0
...................................GCAATAGATTGGGAT........................................................................................................................................................................................................ 15 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0
...............................TGTTGCAATAGATCGGGA......................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.............................................................................AACAGTTGGAGCTCTTATCA......................................................................................................................................................... 20 3 11 0.18 2 0 0 0 0 0 0 2 0 0 0
.............................TCTGTTGCAATAGATTGGGA......................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...............................AGTTGCAATAGATTGGGA......................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AATTAGAGGATCTTCGAT......................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................CAGAATGAGAGGTATTA.......................................................................................................................................... 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0
................................GTTGCAATAGATCGGGA......................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0
................................GTTGCAATAGATTGG........................................................................................................................................................................................................... 15 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
......................................AAAGATTGGCAAACGAATTCA............................................................................................................................................................................................... 21 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................TTTGGTGGAGGACAAATGCA........... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1
................................GTCGCGATGGATTGGGAAAC...................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................ACGCGTTGTTGTCCGG............................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGCCATCCGCGCGG............................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTCTTTAGGTTCTATTCACCGACATGAATTTACATCGTTATCTAACCCTTTGCTCAAGTCATGCGCAACACAAGGCCTTGTCAACCGCCAGAATGGTTTTACTCTCCATGATTTTCGCCTCACTACTTACTGGTCTCTGATTTCTATCGAGTAGCATCAAGGCGGTACACCTAAGGTGAACCCACAGTAAAACCGGTATGAGCGCCTCTAATCTCCTAAAAGCTACCTCCTGTTCACGTTTAACACCCGA
**************************************************........((..(((....((((....))))....)))..))..(((((((((.............(((((..((((.......(((.(((....)))))).))))..)))))(((.((((...)))).)))...)))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................CTCCTCTCATGTCCTAAA.............................. 18 3 20 0.15 3 3 0 0 0
......................................................................................................................................TTCTGATTACTATCGAG................................................................................................... 17 2 12 0.08 1 0 1 0 0
.........................................CTATCCCTGTGCTCAA................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1
.......................................................................................................................................................................................................................AAAAAAGCTACCTCCTGTTT............... 20 3 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 10:31 AM