ID:

dsi_29994

 Coordinate:

3r:4640844-4641013 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.4

Flybase annnotation

exon [3r_4640686_4640843_-]; CDS [3r_4640686_4640843_-]; CDS [3r_4641014_4641222_-]; exon [3r_4641014_4641222_-]; intron [3r_4640844_4641013_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAGCAGCAGCAGCGGCGTCAGCGGCATCCAATCGCAACTCGAGCGTAACGTAAGTTGAAACAGTTTGTATTGTTTTGAATTACACTCGGACTGCCTGATGGCTTGATGGCTGGATGGCTGTGTATGGCTGTATGCCTGGCTTGCTCGCCAACCCAGAGACACGTCGCGTTGAATGCGCTCATTTTCATTGAACTAATTGATTTCAATTTGTATACACAGCAACGGCAACGGCAAAGTCGATGCAAATCCATTCGACGAGGAGGAGGAGT
********************************************************************************************.((.(((((..((..(((.(((..(((...((..(((.....)))..))..)))..)))..)))..))..))))).))...************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 M023
head
 M024
male body		 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
............................................................................................TGCCTGATGGCTTGATGGCTGGATG......................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AACCAACGGCAACGGCAAAGTCGAT............................ 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................TGATGGCTGGATGGCT...................................................................................................................................................... 16 0 2 1.00 2 0 0 0 0 0 0 2 0 0
...................................................................................CACTCGGACTGCCTGATGGC....................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................TTTGAATTACACTCGGACTGCCTGATGGC....................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................ATTACACTCGGACTGCCT............................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................CCAGAGACACGTCGCGTTGA................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..AGCAGCAGCAGCGGCGTCAGCGGC.................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AATGCGCTCATCGTCATT................................................................................ 18 2 6 0.67 4 0 4 0 0 0 0 0 0 0
..........................................................................TTTGGTTTACACTCGGACT................................................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AATGCGCTCATTATCAT................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................CCTGGCTGGCTCGCCA....................................................................................................................... 16 1 5 0.40 2 0 1 0 0 0 0 0 0 1
.....................................................AGTTGAAACAGGTTGTTGTGTT................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................AATGCGCTCATTGTCA.................................................................................. 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AATGCGCTCATCGTCAATGA.............................................................................. 20 3 8 0.25 2 0 2 0 0 0 0 0 0 0
..........................................................................................................ATCGCTGGGTGGCTATGTATG............................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................GTTCAATGCGCTCATCGTCA.................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AATGCGCTCATTTTTA.................................................................................. 16 1 10 0.10 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AATGCGCTCATCTTC................................................................................... 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0
.................................................................................................................GATGGCGGTGAATGGCT............................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0
....................................................................................................GGGATGATGGCTGGATAGCTG..................................................................................................................................................... 21 3 15 0.07 1 0 1 0 0 0 0 0 0 0
........................................................................................GGACTGCTTGGTGGCTTG.................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................CCTGGCTGGCTCGCC........................................................................................................................ 15 1 18 0.06 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGTCGTCGTCGTCGCCGCAGTCGCCGTAGGTTAGCGTTGAGCTCGCATTGCATTCAACTTTGTCAAACATAACAAAACTTAATGTGAGCCTGACGGACTACCGAACTACCGACCTACCGACACATACCGACATACGGACCGAACGAGCGGTTGGGTCTCTGTGCAGCGCAACTTACGCGAGTAAAAGTAACTTGATTAACTAAAGTTAAACATATGTGTCGTTGCCGTTGCCGTTTCAGCTACGTTTAGGTAAGCTGCTCCTCCTCCTCA
*************************************************************************************************.((.(((((..((..(((.(((..(((...((..(((.....)))..))..)))..)))..)))..))..))))).))...******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................................................ACGAGCGGTTGGATC................................................................................................................. 15 1 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................TTACGCGAGTAACAGTA................................................................................. 17 1 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................GCGAGTAAAAGTAACTTG............................................................................ 18 0 1 1.00 1 0 0 1 0 0
......................GACGTAGGTTAGCGTTGAGCTCGCATT............................................................................................................................................................................................................................. 27 1 2 0.50 1 0 1 0 0 0
................................................................................................................................................................................................TGGTTAACCGAAGTTAAACATAT....................................................... 23 3 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................TTACGCGAGTAGCAGTAA................................................................................ 18 2 6 0.33 2 0 2 0 0 0
........................................................................CAAAACTTAATGTCAG...................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0
.................................................................................ATGTGAGCCTGAAGG.............................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0
........TCGTCGCTGCAGTGGCCTTA.................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0
...........................................................................................................................................................................GTTACGCGAGTAACAGTA................................................................................. 18 2 9 0.11 1 0 1 0 0 0
..................................CGTTGAGCTCGCATT............................................................................................................................................................................................................................. 15 0 11 0.09 1 0 1 0 0 0
..............CCACAGTCTCCCTAGGTTA............................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 1
............................................................................................................................................................................TTACGCGAGTATCAGTA................................................................................. 17 2 16 0.06 1 0 1 0 0 0
................................................................................................................................................................................GCGAGTACAAGTAGCTT............................................................................. 17 2 18 0.06 1 0 0 0 0 1
.....................................................................................................................................AGGCACCGAACGAGCG......................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0
...............CGTAGTCGCCGAAGGTT.............................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 10:15 AM