dsi_2997

TTTAAATCGGAACACACAACAATAATATACAAGCAAACACCACCAAATATCGGAAAAGAAAGAAGAGCAAATAATTAAATTACAATAGAAACCAAGAGAATATCACGCAAAATCCCATCATCCCATCGTCTTTGGTCTTCTGGTTCTTGTTCATCACCAACGTTATCGATATTGATATTAAATAGTCTGTGGATATTAAGATACTTATATACAAACGCATCGTATCTGGGATAAACGTTTACCACCAGGAATATTAATGATACGCAACGGCTGTAACTGTAAACTGTGTCCCCTCTCA ************************************************.................................................................................((((.....((((...(((..(((.((((((....((...(((((((......((((..........))))....)))).))).))...)))...))))))..)))...))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	M053 female body	GSM343915 embryo	M025 embryo	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..............................................................................................................................................................................................................................................................................TGTTAACTGTAAACTGTGTCC.......	21	3	6	7.33	44	43	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................AACGCATCGTATCTGGGA...................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TACGCAACGGCTGTAACTGTAAACTGTG..........	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATTAATGATACGCAACGGCTGTAAC.....................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TACGCAACGGCTGTAACTGT..................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TAATGATAAGCAAGGGTTGTA.......................	21	3	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................AGAATAGAAACCAAGAGA.......................................................................................................................................................................................................	18	1	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TAACTGTAGACTGTGTCT.......	18	2	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AAGCGCATCGTGTCTGGGATG.................................................................	21	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ACAAACGCAACTTATATGGGA...................................................................	21	3	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................TGGGATAAAAGCTTACCA......................................................	18	2	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................TCTTTGGTATTCTGG...........................................................................................................................................................	15	1	16	0.13	2	0	0	0	1	0	0	0	0	1	0	0
................................................................................................................................TCTTTGGTTTTCTTGTTCTAG.....................................................................................................................................................	21	3	10	0.10	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................ATTCCATCGTCTGTGGTC.................................................................................................................................................................	18	2	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................TGGGATAAAAGCTTACC.......................................................	17	2	17	0.06	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................TCTTTGGTATTCTAGTTTTTG.....................................................................................................................................................	21	3	19	0.05	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................TGTGGATATGAAGAT................................................................................................	15	1	19	0.05	1	0	0	0	0	0	0	0	0	0	1	0
................................................ATCGGAAAAGAAAGGAT.........................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

AAATTTAGCCTTGTGTGTTGTTATTATATGTTCGTTTGTGGTGGTTTATAGCCTTTTCTTTCTTCTCGTTTATTAATTTAATGTTATCTTTGGTTCTCTTATAGTGCGTTTTAGGGTAGTAGGGTAGCAGAAACCAGAAGACCAAGAACAAGTAGTGGTTGCAATAGCTATAACTATAATTTATCAGACACCTATAATTCTATGAATATATGTTTGCGTAGCATAGACCCTATTTGCAAATGGTGGTCCTTATAATTACTATGCGTTGCCGACATTGACATTTGACACAGGGGAGAGT ************************************************.................................................................................((((.....((((...(((..(((.((((((....((...(((((((......((((..........))))....)))).))).))...)))...))))))..)))...))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.................................................................................................ATTGTAGTGCGTTTTAGGGTAGT..................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................GACCAAGAACAAGTAGTGGTT..........................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................CCAGAAGACCAAGAACAAGTA................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
AAATTTAGCCTTGTG...........................................................................................................................................................................................................................................................................................	15	0	2	0.50	1	0	1	0	0	0	0
......................................................TTACTTTCTTCTCGTCTACTAA..............................................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0
...............................................AGAGCCTTAACTTTCTTCTC.......................................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0
.........................................................................................................................................ACGACAAAGAACAAGTAGT..............................................................................................................................................	19	2	6	0.17	1	0	1	0	0	0	0
................................................................................................................................AGAAACCAGAAGTCC...........................................................................................................................................................	15	1	19	0.05	1	0	0	0	0	1	0
.........................ATATGTTCGATTGTG..................................................................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1
......................ATTATTTGTTCGTTTG....................................................................................................................................................................................................................................................................	16	1	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:8899738-8900035 -	dsi_2997	TTTAA---------------ATCGGAACACACAACAATAA------------------T--ATA--------CAA--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AAAG-------------------------AAGAGCAAATAATTAAATTACAAT--AGAA-ACCAAGAGAA----------------------------------TATCACGC------AAAA----T---------CC--CATC--------ATCCCAT-CGTCTT-TGGTCTTCTGGTTCTTGTTCATCACCAACGT----T---------------------------------ATC-GATAT-TGATATTAAATAG-----TCTGTGGATAT--TAAGATACTTATATACAAACGCATCG--TATCTGGGATAAACGTTTACCACCAGGAATATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAACTGTAAACTGTGTCCCCTCTCA---
droSec2	scaffold_0:1385786-1386083 -		TTTAA---------------ATCGGAACACACAACAATAA------------------T--ATA--------CAA--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AAAG-------------------------AAGAGCAAATAATTAAATTACAAT--AGAA-ACCAAGAGAA----------------------------------TATCACGC------AAAA----T---------CC--CATC--------ATCCCAT-CGTCTT-TGGTCTTCTGGTTCTTGTTCATCACCAACGT----T---------------------------------ATC-GATAT-TGATATTAAATAG-----TCTGTGGATAT--TAAGATACTTATATACAAACGCATCG--TATCTGGGATAAACGTTTACCACAAGGAATATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAACTGTAAATTGTGTCCCCTCTCA---
dm3	chr3L:9123081-9123384 -		TTTAA---------------ATCGGAACACACAACAATAA------------------TATATA--------CAA--GT-AAACACCACTAA-A--TATCGG-----------AAAAG----AAAG-------------------------AAGAGCAAATAATTAAATTACAAA--AGAA-ACCAAGAGAA----------------------------------TATCAAGC------TAAA----T---------CC--CATCATCCCATCATCCCAT-CGTTTT-TGGTCTTCTGGTTCTTGTTCATCACCGACGT----T---------------------------------ATT-GATAT-TGATATTGAATAC---------TGGATAT--TAAGATACATATATACAAACGCATCG--TATCTGGGATAAACGTTCATCACAAGGAATATTAATGATACG--------------------------------------------------------CA------------------AAGG-----------------------CTG---------TAACTGTAAACTGTGTCCCCTCTCA---
droEre2	scaffold_4784:4921446-4921731 +		TTTAA---------------ATCGGAACACACAACAATAA------------------A--ATA--------CAT--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AA--------------------TAGAAA-AAGAGCAAATTATAAAATTACGAT--AGAA-ACCAAGAGAA----------------------------------TATTAACC------GAAA----A---------CC--CGTCA-------ATCCCAT-CGTCTT-TGGTCTTCTGGTTCTTCTTCATCACCAACGTCCGTTAAG---------------------A-ACCACGCATC-GTTAT-TG------AATAA-----TCTGTGGATAT--TGAGATACATATATA----CGCATCG--CATCTAGGATA----------------------AATGATACG--------------------------------------------------------CA------------------ACGA-----------------------CTG---------TAACTGTAAACTGTGTCCCCTCTCA---
droYak3	3L:2794233-2794549 +		TATAA---------------ATCGGAACACACAACAATAA------------------A--ATA--------CAA--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AAAA---------TAA------TAGAAAAGAGAGCAAATAATAAAATTACGAA--AGAA-CCCAAGAGAA----------------------------------TATCACGC------TAAA----A---------CC--CGTC--------ATCCCAT-CGTATT-TGGTCTTCTGGTTCTTGTTCATCACCAACGTCCGTTAAG---------------------A-ACCACGCATC-GATAT-TG------AATAA-----TCTGTGGATAT--TGAGATACATATACACGTACGTATCG--TATCTAGGATAAACGCTCACCAGCACGGATATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------ATG---------TAACTGTAAACTGTGTCCCCTCTCA---
droEug1	scf7180000409467:328677-328943 -		TATAA---------------ATCGGAACAC--AACAAAAA---------------------ATA--------CAA--GT-AAACACCACCAAAA--TATTGA-----------AAAAT----T-AGAAGAAAAAA-----------TTACAACT----------------------------ACCAAGAGAA----------------------------------TATCAACC------ATAA----A---------CT--CGCC--------ATCCCAT-CGTCTT-TGGTCTTCTTGTTCTTGTTA------AACGTCCGTTGGA-----------------------ACCACGCATC-GTGAT-TG------AATAATA-----G----ATCT--GGAGAT------------------TGTATATCTATGATAAACGTATA---CGAGAGATATAGATGATACG--------------------------------------------------------TA------------------ACTGCT-----------------GCA------A---CTATAACTGTAAACGGTGTCC--TCTCA---
droBia1	scf7180000300910:2082102-2082389 +		TATAA---------------ATCGGAACAC--AACAATAA---------------------ATA--------CAA--GC-AAACACCACCAA-G--TATCGA-----------AAA-T----AGAG--AAATAA-A----------TTTAAAAA----------------------------AACAAGAAAT----------------------------------TATCCATC------CTAA----A---------CT--CGTC--------GCCCCAA-CGTCTTTTGGTCTTCTTGTTCTCGTTC------AACGTCCGTTAAA---------------------C-ACCACGCATC-AAGAT-TG------AGTAACATCATCTGTGGATATCCCGAGATATATAGATACA----------ATATCTGTGACAAGCGAGTGC---CAGAGATATAGATGATAAG--------------------------------------------------------GA------------------AAG-CC-------------ACTTGCC------A---CTGTAACTGTAAACGGAGTCCC--CTCA---
droTak1	scf7180000415356:62603-62893 +		TATAA---------------ATCGGAACAC--AACAATAA---------------------ATA--------CAA--GC-AAACACCACCAA-A--TATCGA-----------AAAG-----AAA-------------------TAGAAAGAAAAAC----------------------------AAGA--------------------------------------ATCCATC------TTAA----A---------CT--TGTC--------GTCCCAT-CGTCTTTTGGTCTTCTTGTTCTTGTTC----TCAACGTCCGTTAAA---------------------A-ACCACGCATC-AGGAT-TG------AATAATA-----T----ATAT--CGAGATATATACAT-------------ATATCTATGACAAGCGTATAC---CAGAGATATAGATGATAAGCAGCAGCAGCAGCAGC--------------------------------------------------------------AGCGTTCGG-GAAAAGCACTTGCA------A---CTGTAACTGTAAACGGTGTCCC--CTCA---
droEle1	scf7180000491193:3364889-3365146 -		ATA-ATTCCATGTCAAT-AAATCGGAACAC--AACAATAAATACACCACC---------------------------AA-A----------A-A--TATCAA-------------AAG----AAAA-------AAT----------TATATATA----------------------------ATCAAGAGAA----------------------------------TATCAACA------T-AAACCAACCAA-CGCACC--CGTC--------GTCCCAT-CGTCTT-TGGTCTTCTTGTTC------------AACGTTCGTTAAA-----------------------ATCCCGCATC-GAGAT-AG------AGCTATA--------------------------------------------CATCTGTAATATG---------CAAGATATATAGATGATACG--------------------------------------------------------TA------------------ATAGCTTTCTG-GA------ATTGCCGCTG---------CAACTGTAAACTGTGTCCC----CA---
droRho1	scf7180000777034:198909-199191 -		ATA-ATTCCATCTTTAT-AAATCGGAACAC--AACAATAA---------------------ATA--------CAA--TA-AAACACCACCAATA--TATCTA-----------AAAGA----GAAA-------------------------AATTTTAAAA------AATATA-TATAAAACATTAAAAGAA----------------------------------TATCAACA------T-AAACAAACCAGCCGCACTCGTGTC--------GTCCCAT-CGTCTT-TTGTCTTCTTATTC------------AACGTTCGTTAAA-----------------------ATCACGCATC-GAGAT-TG------AGTTTT--------------------------------------------ATATCTATGATATG---------CAAGATATATAGATGATACG--------------------------------------------------------TA------------------ATAGCTTTTGG-AA------ACGGCAACTG---------CAACTGTAAACTGTGTCCC----CA---
droFic1	scf7180000454065:2544989-2545267 +		TATAA---------------ATCGGAACAC--AACAACAA---------------------ATA--------CAA--ACCAAACACCACCAAAA--TATCGA-----------AAAAA----AAAG-------------------------AAA---AAATAAA-AAAATACA-T--CAAA-ACCAAGAGAA----------------------------------TATCAAAG------TAAA----ATCAACCACA----GTTC--------GTCCCAT-CGTCTT-TGGTCATCTTGTTCTTGTTC------AGCGTCCGTTTAA-----------------------GCCACGCATCCGAGAT-TG------AATAACA-----TATTTATAT--AG--------------AA--------GATATATATGATATG---------CGA-AGATATAGCTGATACG--------------------------------------------------------TA------------------ATAGCATCCGAAGA------A------TTG---------CAACTGTTAACTGTCTCTC----CA---
droKik1	scf7180000302486:1631714-1632009 -		A-TAA---------------ATCGGAACAC--AACAATAA---------------------AC----CAA--CAAGGAA-AAACACCACCAA-A--TATCGA-----------GGAGCATCAAAAA------------ATCGTT--TAAATAGAA---------------GCAAT--AAAA-GCTAGAAAAACAACTAAAGAT------ATAGTATCTCTACCGTGTTTCATCC------AAAA----TCCAACCGCA-T--CGTA--------GTCCCATTCGTC-T-TGGTCATCTAGTTCTTGTTCTTGTTCAGCAT------------------------------------------------TG------AGTAA----------------------------ATATACA-GCGTATTG--TATTT---ATATGCCTGTGCCAT---------------CACG--------------------------------------------------------TAATCGGTAAATTCGGC---AT--------------------TGCA------ATTCCTACAACTGTAAACGGTATCTG----AA---
droAna3	scaffold_13337:19524174-19524432 -		ATA-ATTCCATCAAAAT-AAATCGGAACAC--AACAATAA---------------------ATA--------CAA--GC-AAACACCACCAA-A--TATCCG-----------AAAAA----AAAA------------TTCCTT--TAAAAAAA--------------------------------------------AACGAAAAAAAAAAG-------------TATCT----------ACT----A---------CT--CGTC--------G--CCAT-CGTTTT-TGGTCTTCTTGT----GTTC---------ATCCGTTTCAAAAAAAAAAAGAAATAAAAATAAAAAACGCATC-GAGAT-TG------AATAATA-----TTTA--------------------------------G--TATCTGGCAT----------------------------CACG--------------------------------------------------------CA------------------AC--------------------------TGCAA---TTATAACTGTGAATTTCAACGCGAGCGACAA
droBip1	scf7180000396360:718952-719193 -		CATCA--------AAATAAAATCGGAACAC--AACAATAA---------------------ATA--------CAA--GTAAAACACCACCAAAATATATCTGAAATATATTCGAAAAG----AAA-------------TT-------------------------------CA-T--CAA--------AGAA----TAAACGA------AAAG-------------TATCT----------ACA----A---------CG--CGTC--------G--CCAT-CGA--T-CGGTCTTCTTGTT---GTTC------AA---CCGTTTAA--------CTGAAAG-AAAATA-AAAACGCATC-GAGATTTG------AATAAAA-----TTTA----------------------------------ATATCTGGCAT----------------------------CACG--------------------------------------------------------CA------------------AC--------------------------TGCAATACCAACGTCTGT---------GAACTTCAA---
dp5	XR_group5:558137-558200 -		AATAATTCGAAACG---AATATCGGGACAA--CACAAATA---------------------ATACAACAGTAAAC--GA-AAACACCACCAG-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_67:175418-175481 +		AATAATTCGAAACG---AATATCGGGACAA--CACAAATA---------------------ATACAACAATAAAC--GA-AAACACCACCAG-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004837:1474153-1474231 +		AAAAA---------------AAAAAAATAA--AATA------------------------------------TAT--G-----TTCTAATAA-A--TAAAAA-----------AAAA--------A-------A-A--------TTTAAAAAAAAGCAAA--ATCGAAACACAAC--AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:1591489-1591756 +		TTCAA---------------ATCGGAACGC--AACATAAGA--------------------AAACAACAACAAAC--AA-GAACAACA--------CACTCG-----------A-------------------------------------ACC----------------------------ACCA----AT----------------------------------TAACAACATTAACCGTTA----ACC-GTCGCGCATCCGTC----------------AAACTT-TAACCGTCTTTTACGC------------------------------------------------------------AT-TG------AGTAA-----TAAGAGCACAA--AG---------------------------------------------------AAAAAATAGAAAAGAAAAAAAAACTAAAGCAGCAACGTAACTCCGTAACGTATCAAGAACGCGTCCCGTCTCCCGAATTGTAATTGTGTGTGTGCGA-----------------------ATG---------CAACAGCAACAAGAATCTCTCTTCA---
droMoj3	scaffold_6654:2233713-2233775 -		TTCAA---------------ATCGGAACGC--AACATAAGACAAAACAACAACAACAAC----------------------------------A--TACTCG-----------AAAAC----CA-----------------------------------------------------------CCA----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA
droGri2	scaffold_15110:2677365-2677429 +		TTGAA---------------ATCGGAACCC--CGCAAAACACAAGGA--------------AA-------------------ACA-------------------------------------------------------------TAAAACAA----------------------------AACAAGAAAA----------------------------------AACCACCA------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTTAA---------------ATCGGAACACACAACAATAA------------------T--ATA--------CAA--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AAAG-------------------------AAGAGCAAATAATTAAATTACAAT--AGAA-ACCAAGAGAA----------------------------------TATCACGC------AAAA----T---------CC--CATC--------ATCCCAT-CGTCTT-TGGTCTTCTGGTTCTTGTTCATCACCAACGT----T---------------------------------ATC-GATAT-TGATATTAAATAG-----TCTGTGGATAT--TAAGATACTTATATACAAACGCATCG--TATCTGGGATAAACGTTTACCACCAGGAATATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAACTGTAAACTGTGTCCCCTCTCA---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATCG--TATCTGGGA................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAACTGTAAACTGTG.............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAAC........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAACTGT.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TTTAA---------------ATCGGAACACACAACAATAA------------------T--ATA--------CAA--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AAAG-------------------------AAGAGCAAATAATTAAATTACAAT--AGAA-ACCAAGAGAA----------------------------------TATCACGC------AAAA----T---------CC--CATC--------ATCCCAT-CGTCTT-TGGTCTTCTGGTTCTTGTTCATCACCAACGT----T---------------------------------ATC-GATAT-TGATATTAAATAG-----TCTGTGGATAT--TAAGATACTTATATACAAACGCATCG--TATCTGGGATAAACGTTTACCACAAGGAATATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------CTG---------TAACTGTAAATTGTGTCCCCTCTCA---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TTTAA---------------ATCGGAACACACAACAATAA------------------TATATA--------CAA--GT-AAACACCACTAA-A--TATCGG-----------AAAAG----AAAG-------------------------AAGAGCAAATAATTAAATTACAAA--AGAA-ACCAAGAGAA----------------------------------TATCAAGC------TAAA----T---------CC--CATCATCCCATCATCCCAT-CGTTTT-TGGTCTTCTGGTTCTTGTTCATCACCGACGT----T---------------------------------ATT-GATAT-TGATATTGAATAC---------TGGATAT--TAAGATACATATATACAAACGCATCG--TATCTGGGATAAACGTTCATCACAAGGAATATTAATGATACG--------------------------------------------------------CA------------------AAGG-----------------------CTG---------TAACTGTAAACTGTGTCCCCTCTCA---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATGATACG--------------------------------------------------------CA------------------AAGG-----------------------CTG---------TA..........................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGG-----------------------CTG---------TAACTGTAAACT................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAACTGTGTCCCCTCTCA---	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATACG--------------------------------------------------------CA------------------AAGG-----------------------CTG---------TAACTG......................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACATATATACAAACGCATCG--T........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AAGC------TAAA----T---------CC--CATCATCCCAT...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCATCG--TATCTGGGAT...............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTGTGTCCCCTCTC....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................CTTGTTCATCACCGACGT----T---------------------------------ATT-..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CG--TATCTGGGATAAACGTTCATCACAA................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATAAACGTTCATC....................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATACG--------------------------------------------------------CA------------------AAGG-----------------------CTG---------TAACTGTAAAC.................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAAATTACAAA--AGAA-ACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CATCATCCCATCATCCCAT-..........................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................T----T---------------------------------ATT-GATAT-TGATATTGGC..........................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droEre2

TTTAA---------------ATCGGAACACACAACAATAA------------------A--ATA--------CAT--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AA--------------------TAGAAA-AAGAGCAAATTATAAAATTACGAT--AGAA-ACCAAGAGAA----------------------------------TATTAACC------GAAA----A---------CC--CGTCA-------ATCCCAT-CGTCTT-TGGTCTTCTGGTTCTTCTTCATCACCAACGTCCGTTAAG---------------------A-ACCACGCATC-GTTAT-TG------AATAA-----TCTGTGGATAT--TGAGATACATATATA----CGCATCG--CATCTAGGATA----------------------AATGATACG--------------------------------------------------------CA------------------ACGA-----------------------CTG---------TAACTGTAAACTGTGTCCCCTCTCA---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................ATCCCAT-CGTCTT-TGGTCTTCTGGT.......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGATAT--TGAGATACA............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0

droYak3

TATAA---------------ATCGGAACACACAACAATAA------------------A--ATA--------CAA--GC-AAACACCACCAA-A--TATCGG-----------AAAAG----AAAA---------TAA------TAGAAAAGAGAGCAAATAATAAAATTACGAA--AGAA-CCCAAGAGAA----------------------------------TATCACGC------TAAA----A---------CC--CGTC--------ATCCCAT-CGTATT-TGGTCTTCTGGTTCTTGTTCATCACCAACGTCCGTTAAG---------------------A-ACCACGCATC-GATAT-TG------AATAA-----TCTGTGGATAT--TGAGATACATATACACGTACGTATCG--TATCTAGGATAAACGCTCACCAGCACGGATATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------ATG---------TAACTGTAAACTGTGTCCCCTCTCA---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................A-----TCTGTGGATAT--TGAGATAC.............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACGCATC-GATAT-TG------AATAA-----TCTGTG............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATT-TGGTCTTCTGGTTCTTGTT................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGTAAACTGTGTCCCCT.......	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------ATG---------T...........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATGATACG--------------------------------------------------------CA------------------ACGG-----------------------ATG---------............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG--TATCTAGGATAAACGCTCACCA...................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTTCTTGTTCATCACCAACGTCC..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACATATACACGTACGTATCG--T........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................CAA-A--TATCGG-----------AAAAG----AAAA---------TAA------TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TATAA---------------ATCGGAACAC--AACAAAAA---------------------ATA--------CAA--GT-AAACACCACCAAAA--TATTGA-----------AAAAT----T-AGAAGAAAAAA-----------TTACAACT----------------------------ACCAAGAGAA----------------------------------TATCAACC------ATAA----A---------CT--CGCC--------ATCCCAT-CGTCTT-TGGTCTTCTTGTTCTTGTTA------AACGTCCGTTGGA-----------------------ACCACGCATC-GTGAT-TG------AATAATA-----G----ATCT--GGAGAT------------------TGTATATCTATGATAAACGTATA---CGAGAGATATAGATGATACG--------------------------------------------------------TA------------------ACTGCT-----------------GCA------A---CTATAACTGTAAACGGTGTCC--TCTCA---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATAA---------------ATCGGAACAC--AACAATAA---------------------ATA--------CAA--GC-AAACACCACCAA-G--TATCGA-----------AAA-T----AGAG--AAATAA-A----------TTTAAAAA----------------------------AACAAGAAAT----------------------------------TATCCATC------CTAA----A---------CT--CGTC--------GCCCCAA-CGTCTTTTGGTCTTCTTGTTCTCGTTC------AACGTCCGTTAAA---------------------C-ACCACGCATC-AAGAT-TG------AGTAACATCATCTGTGGATATCCCGAGATATATAGATACA----------ATATCTGTGACAAGCGAGTGC---CAGAGATATAGATGATAAG--------------------------------------------------------GA------------------AAG-CC-------------ACTTGCC------A---CTGTAACTGTAAACGGAGTCCC--CTCA---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATAA---------------ATCGGAACAC--AACAATAA---------------------ATA--------CAA--GC-AAACACCACCAA-A--TATCGA-----------AAAG-----AAA-------------------TAGAAAGAAAAAC----------------------------AAGA--------------------------------------ATCCATC------TTAA----A---------CT--TGTC--------GTCCCAT-CGTCTTTTGGTCTTCTTGTTCTTGTTC----TCAACGTCCGTTAAA---------------------A-ACCACGCATC-AGGAT-TG------AATAATA-----T----ATAT--CGAGATATATACAT-------------ATATCTATGACAAGCGTATAC---CAGAGATATAGATGATAAGCAGCAGCAGCAGCAGC--------------------------------------------------------------AGCGTTCGG-GAAAAGCACTTGCA------A---CTGTAACTGTAAACGGTGTCCC--CTCA---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATA-ATTCCATGTCAAT-AAATCGGAACAC--AACAATAAATACACCACC---------------------------AA-A----------A-A--TATCAA-------------AAG----AAAA-------AAT----------TATATATA----------------------------ATCAAGAGAA----------------------------------TATCAACA------T-AAACCAACCAA-CGCACC--CGTC--------GTCCCAT-CGTCTT-TGGTCTTCTTGTTC------------AACGTTCGTTAAA-----------------------ATCCCGCATC-GAGAT-AG------AGCTATA--------------------------------------------CATCTGTAATATG---------CAAGATATATAGATGATACG--------------------------------------------------------TA------------------ATAGCTTTCTG-GA------ATTGCCGCTG---------CAACTGTAAACTGTGTCCC----CA---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATA-ATTCCATCTTTAT-AAATCGGAACAC--AACAATAA---------------------ATA--------CAA--TA-AAACACCACCAATA--TATCTA-----------AAAGA----GAAA-------------------------AATTTTAAAA------AATATA-TATAAAACATTAAAAGAA----------------------------------TATCAACA------T-AAACAAACCAGCCGCACTCGTGTC--------GTCCCAT-CGTCTT-TTGTCTTCTTATTC------------AACGTTCGTTAAA-----------------------ATCACGCATC-GAGAT-TG------AGTTTT--------------------------------------------ATATCTATGATATG---------CAAGATATATAGATGATACG--------------------------------------------------------TA------------------ATAGCTTTTGG-AA------ACGGCAACTG---------CAACTGTAAACTGTGTCCC----CA---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATAA---------------ATCGGAACAC--AACAACAA---------------------ATA--------CAA--ACCAAACACCACCAAAA--TATCGA-----------AAAAA----AAAG-------------------------AAA---AAATAAA-AAAATACA-T--CAAA-ACCAAGAGAA----------------------------------TATCAAAG------TAAA----ATCAACCACA----GTTC--------GTCCCAT-CGTCTT-TGGTCATCTTGTTCTTGTTC------AGCGTCCGTTTAA-----------------------GCCACGCATCCGAGAT-TG------AATAACA-----TATTTATAT--AG--------------AA--------GATATATATGATATG---------CGA-AGATATAGCTGATACG--------------------------------------------------------TA------------------ATAGCATCCGAAGA------A------TTG---------CAACTGTTAACTGTCTCTC----CA---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A-TAA---------------ATCGGAACAC--AACAATAA---------------------AC----CAA--CAAGGAA-AAACACCACCAA-A--TATCGA-----------GGAGCATCAAAAA------------ATCGTT--TAAATAGAA---------------GCAAT--AAAA-GCTAGAAAAACAACTAAAGAT------ATAGTATCTCTACCGTGTTTCATCC------AAAA----TCCAACCGCA-T--CGTA--------GTCCCATTCGTC-T-TGGTCATCTAGTTCTTGTTCTTGTTCAGCAT------------------------------------------------TG------AGTAA----------------------------ATATACA-GCGTATTG--TATTT---ATATGCCTGTGCCAT---------------CACG--------------------------------------------------------TAATCGGTAAATTCGGC---AT--------------------TGCA------ATTCCTACAACTGTAAACGGTATCTG----AA---	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATA-ATTCCATCAAAAT-AAATCGGAACAC--AACAATAA---------------------ATA--------CAA--GC-AAACACCACCAA-A--TATCCG-----------AAAAA----AAAA------------TTCCTT--TAAAAAAA--------------------------------------------AACGAAAAAAAAAAG-------------TATCT----------ACT----A---------CT--CGTC--------G--CCAT-CGTTTT-TGGTCTTCTTGT----GTTC---------ATCCGTTTCAAAAAAAAAAAGAAATAAAAATAAAAAACGCATC-GAGAT-TG------AATAATA-----TTTA--------------------------------G--TATCTGGCAT----------------------------CACG--------------------------------------------------------CA------------------AC--------------------------TGCAA---TTATAACTGTGAATTTCAACGCGAGCGACAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................AT-CGTTTT-TGGTCTTCTTGT----...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................AAA--------------------------------------------AACGAAAAAAAAAAG-------------T.................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................................................AAA--------------------------------------------AACGAAAAAAAAAAG-------------..................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0
....................................................................................................................................................AAAAAA--------------------------------------------AACGAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGAAATAAAAA........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

CATCA--------AAATAAAATCGGAACAC--AACAATAA---------------------ATA--------CAA--GTAAAACACCACCAAAATATATCTGAAATATATTCGAAAAG----AAA-------------TT-------------------------------CA-T--CAA--------AGAA----TAAACGA------AAAG-------------TATCT----------ACA----A---------CG--CGTC--------G--CCAT-CGA--T-CGGTCTTCTTGTT---GTTC------AA---CCGTTTAA--------CTGAAAG-AAAATA-AAAACGCATC-GAGATTTG------AATAAAA-----TTTA----------------------------------ATATCTGGCAT----------------------------CACG--------------------------------------------------------CA------------------AC--------------------------TGCAATACCAACGTCTGT---------GAACTTCAA---	Size	Hit Count	Total Norm	Total
No Reads

dp5

AATAATTCGAAACG---AATATCGGGACAA--CACAAATA---------------------ATACAACAGTAAAC--GA-AAACACCACCAG-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AATAATTCGAAACG---AATATCGGGACAA--CACAAATA---------------------ATACAACAATAAAC--GA-AAACACCACCAG-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

AAAAA---------------AAAAAAATAA--AATA------------------------------------TAT--G-----TTCTAATAA-A--TAAAAA-----------AAAA--------A-------A-A--------TTTAAAAAAAAGCAAA--ATCGAAACACAAC--AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TTCAA---------------ATCGGAACGC--AACATAAGA--------------------AAACAACAACAAAC--AA-GAACAACA--------CACTCG-----------A-------------------------------------ACC----------------------------ACCA----AT----------------------------------TAACAACATTAACCGTTA----ACC-GTCGCGCATCCGTC----------------AAACTT-TAACCGTCTTTTACGC------------------------------------------------------------AT-TG------AGTAA-----TAAGAGCACAA--AG---------------------------------------------------AAAAAATAGAAAAGAAAAAAAAACTAAAGCAGCAACGTAACTCCGTAACGTATCAAGAACGCGTCCCGTCTCCCGAATTGTAATTGTGTGTGTGCGA-----------------------ATG---------CAACAGCAACAAGAATCTCTCTTCA---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................AACCGTTA----ACC-GTCGCGCATC..............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACGTAACTCCGC..................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................G------AGTAA-----TAAGAGCACAA--AG---------------------------------------------------A...............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................A----ACC-GTCGCGCATCCGTC----------------AAACT.....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGTGTGTGCGA-----------------------ATG---------............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCGA-----------------------ATG---------CAACAGCA....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACAACA--------CACTCG-----------A-------------------------------------ACC----------------------------ACCA----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AACAACAAAC--AA-GAACAACA--------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TAACCGTTA----ACC-GTCGCGCATCC.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................AACAACA--------CACTCG-----------A-------------------------------------ACC----------------------------ACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAAGCAGCAACGT..........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GTTA----ACC-GTCGCGCATCCG............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................CAACA--------CACTCG-----------A-------------------------------------ACC----------------------------ACCA----AT----------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................AAACAACAACAAAC--AA-GAACAACA--------CACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CCGTC----------------AAACTT-TAACCGTCT..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTGTGTGCGA-----------------------ATG---------CAACAGCAACA.................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGCAACGTAACTCCGT..................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACTAAAGCAGCAACGTAA........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGCAACGTAACTCC....................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AC--AA-GAACAACA--------CACTCG-----------A-------------------------------------ACC----------------------------ACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACGTAACTCCGTAAC...............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AGAGCACAA--AG---------------------------------------------------AAAAAAA.........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTCAA---------------ATCGGAACGC--AACATAAGACAAAACAACAACAACAAC----------------------------------A--TACTCG-----------AAAAC----CA-----------------------------------------------------------CCA----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TTGAA---------------ATCGGAACCC--CGCAAAACACAAGGA--------------AA-------------------ACA-------------------------------------------------------------TAAAACAA----------------------------AACAAGAAAA----------------------------------AACCACCA------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-23.48	-23.28	-23.18	-23.1

dsi_2997

3l:8899788-8899985 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads