ID:

dsi_29965

 Coordinate:

x:7973966-7974115 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.0 -2.0 -1.9

Flybase annnotation

exon [x_7974116_7974768_+]; five_prime_UTR [x_7974116_7974734_+]; intron [x_7967456_7974115_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCATAAACTTTTCGACTTTTCCAAACCGAAAACAAATTGTTGTCGCTTTTTTGTAGACTTGTGACCCGATCTTTTGTTGCTTTTCTTGATTTACATTGATTCCACGTTCCAGCCGATCTAGTAGTTATTATTCAAATCGATTTTAATGCATACCTTAAACAAGAAATAAACCAAATGCGTTGTTATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTAAGCTCAACCTCTCAACCTCGACCTCAG
***************************************************************************************..................((((..((.((((..((((.....))))...)))).))..)))).**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M023
head
.....................................................................................................................................................................................................................CCGGTGACTAAGCTCAACCTCTCAACCT......... 28 0 1 3.00 3 0 0 3 0 0 0 0 0
.....................................................................................................................................................................................................AAACCATATCAACGGTCCGGTGACT............................ 25 2 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................AACGGTCCGGTGACTAAGCTC...................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................CATATCAACGGTCCGGTGACTAAGCTC...................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................AGCCATATCAACGGTCCGGT................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................TATTCAAATCGATTTTAATGC.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAACCTCTCAACCTCGACCT... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................TGATTTACATTGATTCCACGTTCCAG......................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................ACCATATCAACGGTCCGGTG............................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAACCATATCAACGGTCCGGTGACTA........................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CAACGGTCCGGTGACTAAGCTCAACCT................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................TTTTTGTAGACTTGTGACCCGATC.................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................TAAACCAAATGCGTTGTTATTGTT........................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACTAAGCTCAACCTCTCAACCTCGAC..... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CATATCAACGGTCCGGTGACTAAGCT....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................CATATCGACGCTCCGGT................................ 17 2 2 0.50 1 0 0 0 1 0 0 0 0
....................................ATTGTTGTCGCTTTTATGTA.................................................................................................................................................................................................. 20 1 2 0.50 1 0 0 0 0 0 1 0 0
.......................................................AGACTAGAGACACGATCTTT............................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................ATTGTTTCCTTGCGGCCA............................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0
........CTGTTCGACTTTTAAAAACC.............................................................................................................................................................................................................................. 20 3 20 0.10 2 0 0 0 0 0 0 0 2
..........................................................CTTGTGACCCGAGCT................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 1 0 0 0
....................................................AGTAGCCGTGTGACCCGA.................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCGTATTTGAAAAGCTGAAAAGGTTTGGCTTTTGTTTAACAACAGCGAAAAAACATCTGAACACTGGGCTAGAAAACAACGAAAAGAACTAAATGTAACTAAGGTGCAAGGTCGGCTAGATCATCAATAATAAGTTTAGCTAAAATTACGTATGGAATTTGTTCTTTATTTGGTTTACGCAACAATAACAACGGAACGTCGGTATAGTTGCCAGGCCACTGATTCGAGTTGGAGAGTTGGAGCTGGAGTC
****************************************************************************************************..................((((..((.((((..((((.....))))...)))).))..)))).*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
................................................................................................................................................................................................................................CGAGTTGGAGTGTTG........... 15 1 4 0.50 2 2 0 0 0
.............................................................................................................................................AAAATTAGGTCTGGATTTTG......................................................................................... 20 3 8 0.38 3 0 0 3 0
..............................................................ACTGGGCTCGAAAACGAC.......................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0
......................................................ATGTGAACACTGGGCT.................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0
............................................................................................................AGGTCGGCTTGATCA............................................................................................................................... 15 1 6 0.17 1 1 0 0 0
.............................................................................................................................................................................................................................ATTCGAATTGGAGTGTTG........... 18 2 10 0.10 1 1 0 0 0
.............................................................................................................................................................................................................................TTTAGAGTTTGAGAGTTGGA......... 20 3 16 0.06 1 0 0 0 1
...............................................................................................TAATTAAGGTGCAAGCTCC........................................................................................................................................ 19 3 20 0.05 1 0 1 0 0
.....................................................................TAGAAAACAACGTAAA..................................................................................................................................................................... 16 1 20 0.05 1 1 0 0 0
...................................................................................................................................................................CTTTATTTGGTGTAC........................................................................ 15 1 20 0.05 1 0 1 0 0
.........................................................TGAACACTGGGCTATT................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................................................GCGAATTGGAGAGTTG........... 16 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................................GCGAGTTGGAGTGTTG........... 16 2 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................................................AGAGTAAGAGCTGGAGT. 17 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:7973916-7974165 + dsi_29965 GGC-----------------ATAAACTTTT-CGACTTTTCCAAACCG-------------------------AAAACAAATT--GTTGTCGCTTTTTTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTAG-------TAGTTATT-----ATTCA-----AATC--GA-T-T----------TTAATG-------------------------CATAC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGA------CCTCAG--------
droSec2 scaffold_35:252619-252868 + GGC-----------------ATACATTTTT-CGACTTTTCCAAACCG-------------------------AAAACAAATT--GTTGTCGCTTTTTTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTAG-------TAGTTATT-----ATTCA-----AATC--GA-T-T----------TTAATG-------------------------CATAC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGA------CCTCAG--------
dm3 chrX:8403289-8403538 + GGC-----------------ATAAACTTTT-CGACTTTTCAAAACCG-------------------------AAAACAAATT--GTTGTCGCTTTTTTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTAG-------TAGTAATT-----ATTCA-----AATC--GA-T-T----------TAAATG-------------------------CATAA-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGA------CCTCAG--------
droEre2 scaffold_4690:6709278-6709520 - AGA-----------------ATAAACCTT---------TCCAATT-------------------------GAGAAACA------ATTGTCGTTTTTATGTAGA----TTTGTGACCCGAT---------------ATTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTT--------TAGTATTT-----ATTCA-----AACC--GA-T-T----------TTAATG-------------------------AATAC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGACCTCGACCTCAG--------
droYak3 X:12910581-12910853 - AATGAAAAGAGATTTTTGAAATAAA---------CTTTTGCAAATGG-------------------------CAAAGAAATT--GTTGTCGCTTTTTTGTAGA----TTTGTGAACCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATTTA-------------------------CACATTGATT-----CCACGTTCCAGCCGATCTATGA-TCTATAGTATTT-----ATGCA-----AACC--GA-T-T----------TTAATG-------------------------AATGC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGACCTCGACCTCAG--------
droEug1 scf7180000408744:15842-16077 + ACC-----------------AGAAAAGTAA-CTGATTCCCCAAAATG-----------------AAAT--GGAAAACAAATT--GTTGCCGCTT--TTGTAGTTGTTTTTGTGACCCGAT---------------CTTAAGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCAAGTTCCAGCCAATCTAT------TTAGTAATT-----A-------------------------------------------------------------------------------------------TTAAACAAAG-A-----ATT-AAAC------CAAAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCAA------CCTCAG--------
droBia1 scf7180000302421:594144-594385 - TAT-----------------TTAAAAAAG-----------------GCTCTTACCGTTTTTCTGTAATTGAAGAAAGAAGTT--TTTGACGCTT--TTGTAGA----GTTGTGACCCGAT---------------ATTTTGTTGCTTT--------TCTT---G-ATT---------------------------TCCATTGATT-----CCACGTTCCAGCCAACCTA--------TAGTACTT-----AATCA-----TCTC--GA-T-T----------T--------------------------------------------------------------AACA-AA-A-----AGT-AAAC------CAAAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCGGCCTCAA------CCTCAG--------
droTak1 scf7180000415812:3488-3745 + TAA-----TAGAGTTCCGAGTTAAA---------CTTATATAGATTT-------------------------AAAACAAA-----TTGCCGCTT--TTGTAGA----TTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TCCATTGATT-----CCACGTTCCAGCCAATCTA--------TAGTATTT-----AATCA-----AACC--GA-T-TTAAATCGATTTTAGTG-------------------------AATGC-----------------------GTTAAACA-AG-A-----AAT-AAAC------CAAAT--ACGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCAA------CCTCAG--------
droEle1 scf7180000490059:697-949 - AGT-----------------TTAAACTAGTT----------AATG-------------------------GTGAAACAAACT--TTTGAAGCTT--TTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TATT---G-ATT---------------------------TCCATTGATT-----CCACGTTCTAGCCAATCTA--------TAGTATAT-----AATCA-----AACC--GA-TCT----------TTAATG-------------------ATCGATCTTTC-----------------------TTTAAACA-AG-A-----AAT-AAAC------CATAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCAG------CCTCAGTCCTTCTA
droFic1 scf7180000453549:163913-164147 - AGT-----------------TCAAACTAGTT---------AAAAACT-------------------------AAAACTGACT--ATTGTTGCTT--TTGTAGA----TTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TCCAATGATT-----CCACGTTCCAGCCAATCTG--------TAGTATTTT----ATTC------AACC--GAATTT----------TTAATG-------------------------AATAC-----------------------GTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAAC------------CTCAG--------
droKik1 scf7180000302704:155701-155892 - AA--------------------------------------------------------------------------GAAAGT--GTTGCCGCC----CGTAGA---TCCTGCGACCTGAA----AGCTTTAAAAACTTTAGTTGATTT--------AGTT---G-ATT---------------------------ACCATTGATA-----CCACCTTCCAGCCGAT------------AATGTTT-----AATCC-----AAAC--AA-T-T----------TAATTA-------------------------AATGT-----------------------GAA------------------------------AAAC--ACAATGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC---------------------TCAA--------
droAna3 scaffold_13248:2509648-2509836 - AA------------------------------------------------------------------------------TTGTTTTGCCGCTTC-TCGTAGA-----TTGTGACTCGAT---------------CTTTAGTTGCTTT--------TGTT---G---T---------------------------TCCATTGATT-----------TCCAGCCCAA----AACTC-------TTTT----------TTTGAA-------------------------------------------------------C-----------------------CTTTTTTA-AGAA-----AAT-AAAC------CA-AT--GCGTTGT-TGTTGTTGCTTTACAGCCATATCAACGGTCCGGTGACTA-AGCCCAGCC-TATCAGCCTCAG------CC------CTTCTA
droBip1 scf7180000396429:462061-462290 + T-----------------------------------------------------------------------------------GTTGCCGCTTC-TCGTAGA-----TTGTGACTCGAT---------------CTTTTGTTGCTTT--------TGTTGTTG-ATT---------------------------TCCATTGATT-----CCACGTTCCAGCCAA-----AACTC-------TTTAA-----T-------AACC--AA-C-T----------TTTATA-------------------------AATGCGAAATAAACTAAATCCCCAAAAACCTAACCA-GA-A-----AAT-AAAC------CA-AT--GCGTTGT-TGTTGTTGCTTTGCAGCCATATCAACGGTCCGGTGACTA-AGCCCAGCC-TGTCAGCCTCAG------CC------CTTCTA
dp5 XL_group1e:3466319-3466498 + T--------------------------------------------------------------------------------------------------------------------------------------CTCTAGTTGTTTTTTTTTTATTGAT---G-ATT---------------------------TCCATTGATTTCCAGCCAGATTCTAGCCGTTCTAGAA-TC-------TATATGCCATAGATTATGAA--TA---------------------------------TCA-------------------ATTAACAAAATACCGAAAT--GT-AACA-CG-A-----ATTCAAAC-----------------------------CCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAGCG---------ACAG------CCACAG--------
droPer2 scaffold_17:403508-403688 + T--------------------------------------------------------------------------------------------------------------------------------------CTCTAGTTGTTTTTTTTTTATTGAT---G-ATT---------------------------TCCATTGATTTCCAGCCAGATTCTAGCCGTTCTAGAATTC-------TATATGCCATAGATTATGAA--TA---------------------------------TCA-------------------TTTAACAAAATACCGAAAT--GT-AACA-CG-A-----ATTCAAAC-----------------------------CCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAGCG---------ACAG------CCACAG--------
droVir3 scaffold_12970:10984444-10984555 - TCT-----------------ACAAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----AATT--CA-T-T----------GAAACA-------------------------AATA----------------CTA--------CAAC---G-A-----AAA-CAACAA----TATATGAACGTTA--TATTGTTGC-TTGCAGCCATATCAACGGTCCGGTGACTAAAGCTCTGTCCT-------------------------------
droMoj3 scaffold_6473:10365440-10365619 + TTT-----------------TT---------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTTTTTTTAAA---T-ATT--GTTTTTCTTTTCATTTTTGTTTGTTTTTATT-----------------------------------------------------------------GT-T-T----------T--GTG-------------------------TAAAT-----------------------ATTGTACA-AG-AAGAGAACA-CAACAATATATATATGAACGTTATATATTGTTGC-TTGCAGCCATATCAACGGTCCGGTGACTAAAGCTCTGTC----CTGTCTCCG------CC-CAA--------
droGri2 scaffold_15203:2979460-2979698 - AA-----------------------------------------ACCT------------------AAA--G-C---AAAAGT--ATTGCCGTT-----ATGAA----TTTATTTAACTATTTTTTGT--------TTTAAGTTTTTTT-----GTTTGTT---GTATA---------------------------TTCATTGATTTCCG---GCGCTCCAAC---------ATT---T----TTTAC-TTATACA-----TTTT--GA-G-T----------TCTACAAACTAACAAATACAAAATAACA---GATA----------------CTA--------CATCA-AG-A-----A---CAACAA----TATATGAACGTTA--TATTGTTGC-TTGCAGCCATATCAACGGTCCGGTGACTAAAGCTCTGTC--------------------CTCA---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGC-----------------ATAAACTTTT-CGACTTTTCCAAACCG-------------------------AAAACAAATT--GTTGTCGCTTTTTTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTAG-------TAGTTATT-----ATTCA-----AATC--GA-T-T----------TTAATG-------------------------CATAC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGA------CCTCAG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGACTA-AGCTCAACC-TCTCAACCT.......................2813.00300300000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTA-AGCTC.....................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CATATCAACGGTCCGGTGACTA-AGCTC.....................................2711.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATATCAACGGTCCGGT................................................2011.00101000000000000000
....................................................................................................................................................................................................................................................T-----ATTCA-----AATC--GA-T-T----------TTAATG-------------------------C............................................................................................................................................................2111.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACC-TCTCAACCTCGA------CCT...........2011.00100010000000000000
...............................................................................................................................................................T---G-ATT---------------------------TACATTGATT-----CCACGTTCCAG.........................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCTCAACC-T...............................2711.00100010000000000000
.............................................................................................TTTTTGTAGA----CTTGTGACCCGAT---------------C..............................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................T-AAAC------CAAAT--GCGTTGT-TATTGTT...........................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCTCAACC-TCTCAACCTCGA------C.............2711.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CATATCAACGGTCCGGTGACTA-AGCT......................................2611.00101000000000000000
droSec2
GGC-----------------ATACATTTTT-CGACTTTTCCAAACCG-------------------------AAAACAAATT--GTTGTCGCTTTTTTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTAG-------TAGTTATT-----ATTCA-----AATC--GA-T-T----------TTAATG-------------------------CATAC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGA------CCTCAG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................CGCTTTTTTGTAGA----CTTGTGACCC.................................................................................................................................................................................................................................................................................................................................................................2412.0021010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTA-AGCTCAACC-TCTCAACCTC......................2211.0010010
.............................................................................AAATT--GTTGTCGCTTTTTTGTAGA----...........................................................................................................................................................................................................................................................................................................................................................................2411.0010100
........................................................................................................................................TTTTGTTGCTTT--------TCTT---G-AT...............................................................................................................................................................................................................................................................................................................1911.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACT............................................1811.0010010
.......................................................................................................................................CTTTTGTTGCTTT--------TCTT---G-AT...............................................................................................................................................................................................................................................................................................................2011.0010010
dm3
GGC-----------------ATAAACTTTT-CGACTTTTCAAAACCG-------------------------AAAACAAATT--GTTGTCGCTTTTTTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTAG-------TAGTAATT-----ATTCA-----AATC--GA-T-T----------TAAATG-------------------------CATAA-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGA------CCTCAG--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACC-TCTCAACCTCGA------CCTCA.........2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAT-AAAC------CAAAT--GCGTTGT-T.................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TCTAG-------TAGTAATT-----ATTCA-----AATC--GA-T-T----------............................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTA-AGCTC.....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGACTA-AGCTCAACC-TCTCAA..........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CATATCAACGGTCCGGTGACTA-..........................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGACTA-AGCTCAACC-TCTC............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATT--GTTGTCGCTTTTTTGTAGA----C..........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACGGTCCGGTGACTA-..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTTGT-TATTGTTGCCTTGCA...................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGCTCAACC-TCTCAACCTCGA------CCTC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................ATCTAG-------TAGTAATT-----ATTCA-----AATC--G...........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTA-AGCTCAACC-TCTCAACCTCGA------A.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATATCAACGGTCCGGTGACTA-..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGACTA-AGCTCAACC-TCTCAACC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGTCCGGTGACTA-AGCT......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTA-AGCTCAACC-TCTCAACCTCG.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGACTA-AGCTCAA...................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T-----CCACGTTCCAGCCGATCTAG-------TAGT.....................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGGTCCGGTGACTA-AGCTCA....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACTA-AGC.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACC-TCTCAACCTCGA------CC............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TCCAGCCGATCTAG-------TAGTAATT-----ATTC........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACGGTCCGGTGACT............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACC-TCTCAACCTC......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA-AGCTCAACC-TCTCAACCTCGA------CCT...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TT-----CCACGTTCCAGCCGATCTAG-------TAGT.....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TT---------------------------TACATTGATT-----CCACGTTCCAGCCGA.....................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGGTCCGGTGACTA-AGC.......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................T-AAAC------CAAAT--GCGTTGT-TATTGTTGCCT.......................................................................2811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGTGACTA-AGCTCAACC-T...............................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................T-AAAC------CAAAT--GCGTTGT-TATTGTT...........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GCTTT--------TCTT---G-ATT---------------------------TA.................................................................................................................................................................................................................................................................................1540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGA-----------------ATAAACCTT---------TCCAATT-------------------------GAGAAACA------ATTGTCGTTTTTATGTAGA----TTTGTGACCCGAT---------------ATTTTGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCACGTTCCAGCCGATCTT--------TAGTATTT-----ATTCA-----AACC--GA-T-T----------TTAATG-------------------------AATAC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGACCTCGACCTCAG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................GCCATATCAACGGTCCGGT................................................1911.0010000100
............................................................................................................................................................................................................................................................................................................................................................................AAC------CAAAT--GCGTTGT-TATTG.............................................................................2011.0010000010
...........................................................................................................................................................................................................................AGCCGATCTT--------TAGTATTT-----A...........................................................................................................................................................................................................................1911.0010000100
...............................................................................................TATGTAGA----TTTGTGACCCGAT---------------...............................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCT......................................2111.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................AAT-AAAC------CAAAT--GCGTTGT-TATT..............................................................................2311.0010100000
...............................................................................................................................................................................................................................................GTATTT-----ATTCA-----AACC--GA-T-T----------TTAATG-------------------------A............................................................................................................................................................2611.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACC-TCTCAACCTCGACCT.................2011.0011000000
......................................................................GAGAAACA------ATTGTCGTTT........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
AATGAAAAGAGATTTTTGAAATAAA---------CTTTTGCAAATGG-------------------------CAAAGAAATT--GTTGTCGCTTTTTTGTAGA----TTTGTGAACCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATTTA-------------------------CACATTGATT-----CCACGTTCCAGCCGATCTATGA-TCTATAGTATTT-----ATGCA-----AACC--GA-T-T----------TTAATG-------------------------AATGC-----------------------CTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TATTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCGACCTCGACCTCAG--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCT......................................2112.00210000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACTA-AGCT......................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTA-AGCT......................................2011.00100001000000
..............................................................................................................GTGAACCGAT---------------CTTTTGTTGCTT...................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACTA-AG........................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCCGGTGACTA-AGCTCAAC..................................2311.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CATATCAACGGTCCGGTGACTA-AGCT......................................2611.00101000000000
..................................................................................................................................................TT--------TCTT---G-ATTTA-------------------------CACATTGATT-----CCACG...............................................................................................................................................................................................................................................................2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTA-AGCTCAAC..................................2411.00100000010000
...........................................................................................................................................................................................................TT-----CCACGTTCCAGCCGATCT..................................................................................................................................................................................................................................................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCTCAACC-TCTCAACCTCGA....................2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCTCAACC-TCTCAAC.........................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCTCAACC-TCT.............................2911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACTA-AGCTCAAC..................................2711.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCTCAACC-T...............................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGACTA-AGCTCAACC-TCTCAACCTC......................2911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTA-AGCTCAACC-TCTCAAC.........................1911.00100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCTCAACC-TCTCAACCTCGACC..................2811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAT-AAAC------CAAAT--GCGTTGT-T.................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGCTCAACC-TCTCAACCTCGAC...................2311.00101000000000
................................................................................................................GAACCGAT---------------CTTTTGTTGCTTT--------TCTT---G-.................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCTCAAC..................................2511.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCTCAACC-TCTCAACCTC......................2411.00100100000000
droEug1
ACC-----------------AGAAAAGTAA-CTGATTCCCCAAAATG-----------------AAAT--GGAAAACAAATT--GTTGCCGCTT--TTGTAGTTGTTTTTGTGACCCGAT---------------CTTAAGTTGCTTT--------TCTT---G-ATT---------------------------TACATTGATT-----CCAAGTTCCAGCCAATCTAT------TTAGTAATT-----A-------------------------------------------------------------------------------------------TTAAACAAAG-A-----ATT-AAAC------CAAAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCAA------CCTCAG--------SizeHit CountTotal NormTotal
No Reads
droBia1
TAT-----------------TTAAAAAAG-----------------GCTCTTACCGTTTTTCTGTAATTGAAGAAAGAAGTT--TTTGACGCTT--TTGTAGA----GTTGTGACCCGAT---------------ATTTTGTTGCTTT--------TCTT---G-ATT---------------------------TCCATTGATT-----CCACGTTCCAGCCAACCTA--------TAGTACTT-----AATCA-----TCTC--GA-T-T----------T--------------------------------------------------------------AACA-AA-A-----AGT-AAAC------CAAAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCGGCCTCAA------CCTCAG--------SizeHit CountTotal NormTotal
No Reads
droTak1
TAA-----TAGAGTTCCGAGTTAAA---------CTTATATAGATTT-------------------------AAAACAAA-----TTGCCGCTT--TTGTAGA----TTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TCCATTGATT-----CCACGTTCCAGCCAATCTA--------TAGTATTT-----AATCA-----AACC--GA-T-TTAAATCGATTTTAGTG-------------------------AATGC-----------------------GTTAAACA-AG-A-----AAT-AAAC------CAAAT--ACGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCAA------CCTCAG--------SizeHit CountTotal NormTotal
No Reads
droEle1
AGT-----------------TTAAACTAGTT----------AATG-------------------------GTGAAACAAACT--TTTGAAGCTT--TTGTAGA----CTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TATT---G-ATT---------------------------TCCATTGATT-----CCACGTTCTAGCCAATCTA--------TAGTATAT-----AATCA-----AACC--GA-TCT----------TTAATG-------------------ATCGATCTTTC-----------------------TTTAAACA-AG-A-----AAT-AAAC------CATAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAACCTCAG------CCTCAGTCCTTCTASizeHit CountTotal NormTotal
No Reads
droFic1
AGT-----------------TCAAACTAGTT---------AAAAACT-------------------------AAAACTGACT--ATTGTTGCTT--TTGTAGA----TTTGTGACCCGAT---------------CTTTTGTTGCTTT--------TCTT---G-ATT---------------------------TCCAATGATT-----CCACGTTCCAGCCAATCTG--------TAGTATTTT----ATTC------AACC--GAATTT----------TTAATG-------------------------AATAC-----------------------GTTAAACA-AG-A-----AAT-AAAC------CAAAT--GCGTTGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC-TCTCAAC------------CTCAG--------SizeHit CountTotal NormTotal
No Reads
droKik1
AA--------------------------------------------------------------------------GAAAGT--GTTGCCGCC----CGTAGA---TCCTGCGACCTGAA----AGCTTTAAAAACTTTAGTTGATTT--------AGTT---G-ATT---------------------------ACCATTGATA-----CCACCTTCCAGCCGAT------------AATGTTT-----AATCC-----AAAC--AA-T-T----------TAATTA-------------------------AATGT-----------------------GAA------------------------------AAAC--ACAATGT-TGTTGTTGCCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAACC---------------------TCAA--------SizeHit CountTotal NormTotal
No Reads
droAna3
AA------------------------------------------------------------------------------TTGTTTTGCCGCTTC-TCGTAGA-----TTGTGACTCGAT---------------CTTTAGTTGCTTT--------TGTT---G---T---------------------------TCCATTGATT-----------TCCAGCCCAA----AACTC-------TTTT----------TTTGAA-------------------------------------------------------C-----------------------CTTTTTTA-AGAA-----AAT-AAAC------CA-AT--GCGTTGT-TGTTGTTGCTTTACAGCCATATCAACGGTCCGGTGACTA-AGCCCAGCC-TATCAGCCTCAG------CC------CTTCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACTA-AGCCC.....................................2411.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTTGT-TGTTGTTGCTTTACA...................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCCCAGCC-TATCAGC.........................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTACAGCCATATCAACGGTCCGGTGAC.............................................2711.001100000
AA------------------------------------------------------------------------------TTGTTTTGCCGCTTC-TCG...................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................TTC-TCGTAGA-----TTGTGACTCGAT---------------CTTT...........................................................................................................................................................................................................................................................................................................................................2611.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTA-AGCCCA....................................2311.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTA-AGCCCAGCC-TATCAGCC........................2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCCCAGCC-TATCAGCCTC......................2411.001100000
droBip1
T-----------------------------------------------------------------------------------GTTGCCGCTTC-TCGTAGA-----TTGTGACTCGAT---------------CTTTTGTTGCTTT--------TGTTGTTG-ATT---------------------------TCCATTGATT-----CCACGTTCCAGCCAA-----AACTC-------TTTAA-----T-------AACC--AA-C-T----------TTTATA-------------------------AATGCGAAATAAACTAAATCCCCAAAAACCTAACCA-GA-A-----AAT-AAAC------CA-AT--GCGTTGT-TGTTGTTGCTTTGCAGCCATATCAACGGTCCGGTGACTA-AGCCCAGCC-TGTCAGCCTCAG------CC------CTTCTASizeHit CountTotal NormTotal
No Reads
dp5
T--------------------------------------------------------------------------------------------------------------------------------------CTCTAGTTGTTTTTTTTTTATTGAT---G-ATT---------------------------TCCATTGATTTCCAGCCAGATTCTAGCCGTTCTAGAA-TC-------TATATGCCATAGATTATGAA--TA---------------------------------TCA-------------------ATTAACAAAATACCGAAAT--GT-AACA-CG-A-----ATTCAAAC-----------------------------CCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAGCG---------ACAG------CCACAG--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTA-AGCTCAGC..................................2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA-AGCTCAGCG---------ACAG------CCACA.........2211.0010000100000
droPer2
T--------------------------------------------------------------------------------------------------------------------------------------CTCTAGTTGTTTTTTTTTTATTGAT---G-ATT---------------------------TCCATTGATTTCCAGCCAGATTCTAGCCGTTCTAGAATTC-------TATATGCCATAGATTATGAA--TA---------------------------------TCA-------------------TTTAACAAAATACCGAAAT--GT-AACA-CG-A-----ATTCAAAC-----------------------------CCTTGCAGCCATATCAACGGTCCGGTGACTA-AGCTCAGCG---------ACAG------CCACAG--------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTA-AGCTCAGCG---------ACAG------CC............2212.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTA-AGCTCAGCG---------ACAG------CC............2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTA-AGCTCAGCG---------ACAG------..............1811.001100000
droVir3
TCT-----------------ACAAGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-----AATT--CA-T-T----------GAAACA-------------------------AATA----------------CTA--------CAAC---G-A-----AAA-CAACAA----TATATGAACGTTA--TATTGTTGC-TTGCAGCCATATCAACGGTCCGGTGACTAAAGCTCTGTCCT-------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGGTCCGGTGACTAAAGCTCT....................................2611.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTAAAGCTCTGTCC................................2711.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACGGTCCGGTGACTAAAGCTCT....................................2811.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTTA--TATTGTTGC-TTGCAG..................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATATGAACGTTA--TATTGTTGC-TTGCAG..................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTT-----------------TT---------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTTTTTTTAAA---T-ATT--GTTTTTCTTTTCATTTTTGTTTGTTTTTATT-----------------------------------------------------------------GT-T-T----------T--GTG-------------------------TAAAT-----------------------ATTGTACA-AG-AAGAGAACA-CAACAATATATATATGAACGTTATATATTGTTGC-TTGCAGCCATATCAACGGTCCGGTGACTAAAGCTCTGTC----CTGTCTCCG------CC-CAA--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAAAGCTCTGTC----CTGT.........................1914.004400000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAAAGCTCTGTC----CTGTCTCCG------CC-...........2612.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCAACGGTCCGGT................................................1812.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAAAGCTCTGTC----CTGTCTC......................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGGTCCGGTGACTAAAGCT......................................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTAAAGCTCTGT..................................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTCCGGTGACTAAAGCT......................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGGTCCGGTGACTAAA.........................................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCCGGTGACTAAAGCTC.....................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCAACGGTCCGGTG...............................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................CCATATCAACGGTCCGGTGA..............................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGACTAAAGCTCTGTC----CTGT.........................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAAGCTCTGTC----CTGTCTCCG------CC-...........2511.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGCTCTGTC----CTGTCTC......................2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTC----CTGTCTCCG------C.............1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CATATCAACGGTCCGGTG...............................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTCTGTC----CTGTCTCCG------CC-...........2311.001100000
droGri2
AA-----------------------------------------ACCT------------------AAA--G-C---AAAAGT--ATTGCCGTT-----ATGAA----TTTATTTAACTATTTTTTGT--------TTTAAGTTTTTTT-----GTTTGTT---GTATA---------------------------TTCATTGATTTCCG---GCGCTCCAAC---------ATT---T----TTTAC-TTATACA-----TTTT--GA-G-T----------TCTACAAACTAACAAATACAAAATAACA---GATA----------------CTA--------CATCA-AG-A-----A---CAACAA----TATATGAACGTTA--TATTGTTGC-TTGCAGCCATATCAACGGTCCGGTGACTAAAGCTCTGTC--------------------CTCA---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:04 AM