dsi_29922

CDS [3r_5570700_5570707_+]; five_prime_UTR [3r_5570524_5570699_+]; CDS [3r_5570772_5571332_+]; exon [3r_5570772_5571332_+]; exon [3r_5570524_5570707_+]; intron [3r_5570708_5570771_+]

##################################################----------------------------------------------------------------################################################## ATATAGGCGGGATATAGTGACGCAGCCAGTAATCAAAACACAATGGAGAGGTACGGATGCGTGGCTCCACTGGATGTTCTGGTTAGCAATTTAACATTTGCTTCGGTGTTGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA ************************************************.......(((.......(((((((.((....((((......))))....)))))))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...........................................................................GTTCTGGTTAGCAATTTAACATTTGCT..............................................................	27	0	1	2.00	2	2	0	0	0	0	0	0	0
...............................ATCAAAACACAATGGAGAG..................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
...................................................................................................................................CGCAACTGGGGCCACACTTTGCCCCCCTG....	29	0	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................ATTTGCTTCGGTGTTGCAGCT................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................GTAGCAGCCGCGCAACTG.........................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
.......................................ACAATGGAGAGGTACGGATG.........................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
..ATAGGCGGGATATAGTGACGC.............................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.............................................GAGAGGTACGGATGCCA......................................................................................................	17	2	6	0.17	1	0	0	1	0	0	0	0	0
.......CGGGACTTAGTGACGCA............................................................................................................................................	17	2	7	0.14	1	0	0	0	1	0	0	0	0
............................................TGAGAGGTACGGGTGC........................................................................................................	16	2	19	0.11	2	0	0	2	0	0	0	0	0
.......................................................CAGGCGTGGCTCAACTGGAT.........................................................................................	20	3	10	0.10	1	0	0	0	0	1	0	0	0
...........ATATCGTGACGCGGCC.........................................................................................................................................	16	2	19	0.05	1	0	0	0	0	0	1	0	0
........AGGACTTAGTGACGCAGC..........................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1
..............................................................................................................GCAGCTTTACAGTGGCATC...................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0
..............................................................................................CATTTCCTTCGTTGTTGC....................................................	18	2	20	0.05	1	1	0	0	0	0	0	0	0
.........................................................................................................................GTAGCAGGCGCGCAAA...........................	16	2	20	0.05	1	0	0	0	0	0	0	1	0

TATATCCGCCCTATATCACTGCGTCGGTCATTAGTTTTGTGTTACCTCTCCATGCCTACGCACCGAGGTGACCTACAAGACCAATCGTTAAATTGTAAACGAAGCCACAACGTCGAAACGTCATCGTCGGCGCGTTGACCCCGGTGTGAAACGGGGGGACAGGT ************************************************.......(((.......(((((((.((....((((......))))....)))))))))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs
.................ACTGCGTCGGTCATTAGT.................................................................................................................................	18	0	1	1.00	1	1	0	0	0
...............................................................................AGCAATCGTTAAATTG.....................................................................	16	1	6	0.33	2	0	2	0	0
...................TACGTAGGTCATTGGTTTTGT............................................................................................................................	21	3	4	0.25	1	0	0	1	0
...........................................ACCACTCGATGCCTACG........................................................................................................	17	2	14	0.07	1	0	1	0	0
..........................................................................................................TCAACGTCGAAACGT...........................................	15	1	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:5570658-5570821 +	dsi_29922	A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AATC---AAAACACAATGGAGAGGTACGGAT----------------------------GCGTGGCTCCACTG--G---------ATGTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
droSec2	scaffold_25:63640-63803 +		A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AATC---AAAACACAATGGAGAGGTACGGAT----------------------------GCGCGGATCCACTG--G---------ATGTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
dm3	chr3R:15713632-15713794 -		A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AACC---AAAACACAATGGAGAGGTACGAT-----------------------------CGGTGGATCCACTG--G---------ATGTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
droEre2	scaffold_4770:5949173-5949340 +		A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AACC---AAAACACAATGGAGAGGTACGAT-----------------------------CCGTGTATCCACTG-----TGGTGGGAAGCT----GTGG---------------T-----------------------------CTGCAA---TT-AA-C-CTTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
droYak3	3R:4485313-4485475 -		A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AACC---AAAACACAATGGAGAGGTACGAT-----------------------------CCGCGGATCCACTG--G---------GAGTA----ATGG---------------T-----------------------------CTGCAAC--TT-AA-C-TTTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
droEug1	scf7180000409804:2022983-2023163 -		A------TATAGGCGGGATATAGTG-ACGCAGCCAAC----------------AACT---AAGACACAATGGAGAGGTACGACA-----------GTCTGGA----------------ATCCC-TA--G---------ATCAC----TTG---------------------------GAGTTTTATCTTCTGCATTTTGAAAT--TT-GAAT-ATTTG-TTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCTCTATCCA
droBia1	scf7180000302402:1488638-1488702 -		T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-AA-A-TTTCACTTCG-ACGT--TGCAGCTTTGT--------TAACAC-ACTGGGGCCACACTTTGCCCCCCTGTCCA
droTak1	scf7180000415710:95221-95300 +		T------AATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TT-TA-A-TTTTAATTTG-CTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCGCACTTTGCCCCCCTGTCCA
droEle1	scf7180000491008:1193560-1193727 +		A------TATAGGCGGGATATAGTG-ACGCAGCCAGA----------------TAACAAAAAAACACAATGGAGAGGTACGAGCCC-------------GAA-----GA--------GATCCA-TA--G---------AT----------------------------------TTCAAGTCCTATATACTGC------------------A-TTTTGGTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
droRho1	scf7180000780274:116968-117132 +		A------TATAGGCGGGATAAAGTG-ACGCAGCCAGA----------------TAAC---AAAACACAATGGAGAGGTACGACCCC-------------GAG-----GA--------AATCCAA-A--G---------AT----------------------------------TTGGAGTTATCTGTACTG----------------AA---TTTTTGTTCG-TTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCTTGTCCA
droFic1	scf7180000454126:737700-737870 -		A------TATAGGCGGGATATAGTTAACGCAACCAGC----------------AACC---AAGACACAATGGAGAGGTACGACTTCAAGGAGAACAT---------------CCACGTACCCACTC--G---------GAT--------------------TTTATT------------------------------CAAAAC--TT-AA---ATTTACTT-G-GTGT--TGCAGCTTTTCAGTAGCAGCCGC---ACTGGGGCCACACTTTGCCCCCCTGTCCA
droKik1	scf7180000297926:103486-103662 +		A------TATAGGCGGGATATAGTG-ACGCAGCCAGG----------------AACCT--AAAACACAATGGAGAGGTACGGCTAG-------A------CGAT--------CGTTCAATCCGCTG--G---------AAGTA----AT-------------TC--------ATT----------------------TAAAATTTTTGAA-CTTTTTGGTCCA-ATGC--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA
droAna3	scaffold_13340:2294542-2294721 -		A------TACAGGCGGGATATAGTG-ACGCAGCCAGA----------------AACT---TAGACACAATGGAGAGGTACGATCC-ATTGAGGAT------------GCT--TTCCGCACCCA-TG--G-AT-----------------------------TGGATCCAAAGATTTA---------ATATTCC------------------G-TTTTGATTCG-ATGT--TGCAGCTTCGCAGCAGCAGCCACACAACTGGGGCCCCACTTTGCCCCCCTGTCCA
droBip1	scf7180000396712:2048151-2048321 +		A------TACAGGCGGGATATAGTG-ACGCAGCCAGA----------------AACT---TAGACACAATGGAGAGGTAGGATTC-ATGGTGGAT------------GCT--TCTCAGATCCAT-G--G---------------------------------------AATGATT--------T--AATT-------TG---------AG-G-TTTTGCTTCG-ATGT--TGCAGCTTCGCAGCAGCAGCCACACAACTGGGGCCCCACTTTGCCCCCCTGTCCA
dp5	2:26298336-26298506 +		AG--ATTTATAGGCGGGCTATAGTG-ACACA-CAAAT-AAC-----TGGGAAAAATA---AAATCACAATGGATAGGTAGGAAG-----------AT---------------CTACATACTCG-TA--G-ATGATGG-------------------------------GATGA--------CCT--ATACCCT------------------A-TT---------TTGT--TGCAGCTTTGCAGCAGTAGCCACACAATTGGGGCCGCATTTCGCAGCCCTTTCGA
droPer2	scaffold_6:1628200-1628370 +		AG--TTTTATAGGCGGGATATAGTG-ACACA-CAAAT-AAC-----TGGGAAAAATA---AAATCACAATGGATAGGTAGGAAG-----------AT---------------CTACATACTCG-TA--G-ATGATGG-------------------------------GATGA--------CCT--ATACCCT------------------A-TT---------TTGT--TGCAGCTTTGCAGCAGTAGCCACACAATTGGGGCCGCATTTCGCAGCCCTTTCGA
droWil2	scf2_1100000004921:4100364-4100552 +		AAGAATTTATAGACGGGATATAGTG-TAAATACAAAAAAAAAAAACCACCAAAAACAT--TTATTAAAATGGAAAGGTAGATGTTT-------------GAA----------------ATTTT-CT--GGCGA-----AT----TCTTTGTTCCACACTGA-----T----TG--------CGT--GT------------------------------ATTCC-TTTT--GTTAGCTTTATATCATCAGCAGCACAGCTGGGGCCCCATTTCGCCCCACTATCAA
droVir3	scaffold_12855:7415955-7416122 -		AG--C--TAAAGCCGGGATATAGTG-CAAAAGCGGAT----------------ATTT-AAAATTCAAAATGGAGAGGTAAGCCT---------------GGGACAAAGCAATCT------TTA-TG--G-ATAATAC-------------------------------AATTT--------CGT--GTAA------------------AA-C-ATTTG---------TTGCGCAGCTTCGCAGCAGTTGCCACACAGCTGGGTCCACACTTTGCCGCCCTGTCCA
droMoj3	scaffold_6540:25234522-25234680 +		AA--C--TTAAGCCGGGATCTAGCGGATACA-C-----------------------A---AATTCACAATGGAAAGGTAAGCGG----------------------------------G-CCATCG--G---------ATAATGCTTATAGTATATATTGT-----T-----------------------------TA-------TA-AA-C-AT----TTCT-GTGTTGCGTAGCTTTGCAGCAGTAGCCACACAGCTGGGGCCACACTTTGCCCCACTGTCCA
droGri2	scaffold_15074:5444841-5445009 +		AG--C--AAAAGCCGGGATATAGTG-CTAATACCAAT----------------ACGA---GATTCGAAATGGAGAGGTAGGCT-AT-------------GAGAT--------T----GATCAATTGTAG-AGG-----ATGATCC--TTGT-----------------------------------CTCA----------TACATAT-----------ATCCTTTTTG--TGCAGCTTTGCAGCAGTAGCAACACAACTGGGGCCACACTTTGCCCCACTGTCCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AATC---AAAACACAATGGAGAGGTACGGAT----------------------------GCGTGGCTCCACTG--G---------ATGTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................GTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCT.................................................................	27	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................ATC---AAAACACAATGGAGAG.................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CGCAACTGGGGCCACACTTTGCCCCCCTG....	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATTTGCTTCG-GTGT--TGCAGCT................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GTAGCAGCCGCGCAACTG.........................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................ACAATGGAGAGGTACGGAT----------------------------G............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................GAGAGGTACGGAT----------------------------GCCA.........................................................................................................................................................................	17	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AATC---AAAACACAATGGAGAGGTACGGAT----------------------------GCGCGGATCCACTG--G---------ATGTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................GTAGCAGCCGCGCAACTGGGGCC....................	23	1	2.00	2	0	0	0	2
.........................................................................................................................................................................................................................................................CCGCGCAACTGGGGCCACT.................	19	1	1.00	1	0	0	0	1
.................................................................ACAATGGAGAGGTACGGA..........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................TGCAGTAGCAGCCGCGCAACTGGGGCC....................	27	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................AGCAGCCGCGCAACTGGGGCC....................	21	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................GTAGCAGCCGCGCAACTGGGGC.....................	22	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................GTAGCAGCCGCGCAACTGGGG......................	21	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................AA-C-ATTTGCTTCG-GTGT--TGCAG..................................................	22	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................................AGCTTTGCAGTAGCAGCCGCG...............................	21	1	1.00	1	0	0	0	1
........................G-ACGCAGCCAGT----------------AATC---AAAACA...........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1

dm3

A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AACC---AAAACACAATGGAGAGGTACGAT-----------------------------CGGTGGATCCACTG--G---------ATGTT----CTGG---------------T-----------------------------TAGCAAT--TT-AA-C-ATTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................AGCAGCCGCGCAACTGGGGCCAC..................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CAACTGGGGCCACACTTT.............	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATTTGCTTCG-GTGT--TGCAG..................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GCGCAACTGGGGCCACAC................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AA-C-ATTTGCTTCG-GTGT--TGCAG..................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
..................................AGT----------------AACC---AAAACACAATGGAGAGC................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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.............CGGGATATAGTG-ACGCAGCCAGT----------------AACC---A................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGTG-ACGCAGCCAGT----------------AAC.....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GTACGAT-----------------------------CGGTGGATCCACTG--G---------...................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GCAGTAGCAGCCGCGCAACTGGGGCCACAC................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TTTGCTTCG-GTGT--TGCAGT.................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GCAGCTTTGCAGTAGCAGC...................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
A------TATAGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGCCGCGCAACTGGGGCCA...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CAGCCGCGCAACTGGGGTA....................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AACC---AAAACACAATGGAGAGGTACGAT-----------------------------CCGTGTATCCACTG-----TGGTGGGAAGCT----GTGG---------------T-----------------------------CTGCAA---TT-AA-C-CTTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................G-ACGCAGCCAGT----------------AACC---AAAACACA.........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................TTGCAGTAGCAGCCGCGCA.............................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................TATCCACTG-----TGGTGGGAAGC...............................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................TTGCAGTAGCAGCCGCGCAACTGGGGCC....................	28	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................GTAGCAGCCGCGCAACTGGGGCC....................	23	1	1.00	1	0	0	0	0	0	1	0
...........GGCGGGATATAGTG-ACGCA..............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................AGCAGCCGCGCAACTGGGGCC....................	21	1	1.00	1	0	0	0	0	0	1	0
..................TATAGTG-ACGCAGCCAGT----------------AACC---.................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.....................AGTG-ACGCAGCCAGT----------------AACC---AAAA.............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
......................GTG-ACGCAGCCAGT----------------AACC---A................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
A------TATAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................GCAGCCGCGCAACTGGGGCC....................	20	1	1.00	1	0	0	0	0	0	1	0
........................G-ACGCAGCCAGT----------------AACC---AAAAC............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0

droYak3

A------TATAGGCGGGATATAGTG-ACGCAGCCAGT----------------AACC---AAAACACAATGGAGAGGTACGAT-----------------------------CCGCGGATCCACTG--G---------GAGTA----ATGG---------------T-----------------------------CTGCAAC--TT-AA-C-TTTTGCTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........ATAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	21	1	15.00	15	0	0	0	0	5	10	0	0	0	0	0
........ATAGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	25	1	12.00	12	0	0	0	0	3	9	0	0	0	0	0
........ATAGGCGGGATATAGTG-AC.................................................................................................................................................................................................................................................................	19	1	11.00	11	0	0	0	0	4	7	0	0	0	0	0
........ATAGGCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	2	6	0	0	0	0	0
.........TAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	2	2	0	0	0	0	0
........ATAGGCGGGATATAGTG-A..................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	2	2	0	0	0	0	0
.........TAGGCGGGATATAGTG-AC.................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	1	2	0	0	0	0	0
............GCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	1	2	0	0	0	0	0
......................................................................................................................................................G---------------T-----------------------------CTGCAAC--TT-AA-C-TTTTGCTT................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.........TAGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0
........ATAGGCGGGATATAGTG-...................................................................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0
............GCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCAGCCGCGCAACTGGGGCC....................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0
..................TATAGTG-ACGCAGCCAGT----------------........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......TATAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TAGCAGCCGCGCAACTGGGGCCAC..................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TAGCAGCCGCGCAACTGGGGCC....................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........AGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTAGCAGCCGCGCAACT..........................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
........ATAGGCGGGATATAGTG-ACGCA..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...........GGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........ATAGGCGGGATATAGTG-ACGCC..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTAGCAGCCGCGCAACTGGGGCC....................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.........TAGGCGGGATATAGTG-ACGCAGCCAGT----------------........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................GCGCAACTGGGGCCACACT...............	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTAGCAGCCGCGCAACTGGGGCCAC..................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTTGCAGTAGCAGCCGCGCA.............................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AGCTTTGCAGTAGCAGCCGCGC..............................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTAGCAGCCGCGCAACTGGGGCCA...................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCAGCCGCGCAACTGGGGCC....................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGCAGTAGCAGCCGCGCA.............................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCAGCCGCGCAACTGGGGCCAC..................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........AGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

A------TATAGGCGGGATATAGTG-ACGCAGCCAAC----------------AACT---AAGACACAATGGAGAGGTACGACA-----------GTCTGGA----------------ATCCC-TA--G---------ATCAC----TTG---------------------------GAGTTTTATCTTCTGCATTTTGAAAT--TT-GAAT-ATTTG-TTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCTCTATCCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-AA-A-TTTCACTTCG-ACGT--TGCAGCTTTGT--------TAACAC-ACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T------AATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TT-TA-A-TTTTAATTTG-CTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCGCACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A------TATAGGCGGGATATAGTG-ACGCAGCCAGA----------------TAACAAAAAAACACAATGGAGAGGTACGAGCCC-------------GAA-----GA--------GATCCA-TA--G---------AT----------------------------------TTCAAGTCCTATATACTGC------------------A-TTTTGGTTCG-GTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A------TATAGGCGGGATAAAGTG-ACGCAGCCAGA----------------TAAC---AAAACACAATGGAGAGGTACGACCCC-------------GAG-----GA--------AATCCAA-A--G---------AT----------------------------------TTGGAGTTATCTGTACTG----------------AA---TTTTTGTTCG-TTGT--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCTTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A------TATAGGCGGGATATAGTTAACGCAACCAGC----------------AACC---AAGACACAATGGAGAGGTACGACTTCAAGGAGAACAT---------------CCACGTACCCACTC--G---------GAT--------------------TTTATT------------------------------CAAAAC--TT-AA---ATTTACTT-G-GTGT--TGCAGCTTTTCAGTAGCAGCCGC---ACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A------TATAGGCGGGATATAGTG-ACGCAGCCAGG----------------AACCT--AAAACACAATGGAGAGGTACGGCTAG-------A------CGAT--------CGTTCAATCCGCTG--G---------AAGTA----AT-------------TC--------ATT----------------------TAAAATTTTTGAA-CTTTTTGGTCCA-ATGC--TGCAGCTTTGCAGTAGCAGCCGCGCAACTGGGGCCACACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A------TACAGGCGGGATATAGTG-ACGCAGCCAGA----------------AACT---TAGACACAATGGAGAGGTACGATCC-ATTGAGGAT------------GCT--TTCCGCACCCA-TG--G-AT-----------------------------TGGATCCAAAGATTTA---------ATATTCC------------------G-TTTTGATTCG-ATGT--TGCAGCTTCGCAGCAGCAGCCACACAACTGGGGCCCCACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........GGCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	21	1	13.00	13	0	0	0	0	0	13
...........GGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	9
...............................GCCAGA----------------AACT---TAGACACAAT.......................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	6
...................ATAGTG-ACGCAGCCAGA----------------AACT---.................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	6
...........GGCGGGATATAGTG-ACGCA..............................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	2	0	4
.....................AGTG-ACGCAGCCAGA----------------AACT---.................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5
..................TATAGTG-ACGCAGCCAGA----------------A.......................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5
...............................GCCAGA----------------AACT---TAGACACAATGGAGAGC................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	5
.......TACAGGCGGGATATAGTG-ACGCA..............................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	5
....................................A----------------AACT---TAGACACAATGGAG...................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5
.........CAGGCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	4
........ACAGGCGGGATATAGTG-ACGCA..............................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4
...................ATAGTG-ACGCAGCCAGA----------------AACT---T................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
......................GTG-ACGCAGCCAGA----------------AACT---TAGAC............................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3
.....................AGTG-ACGCAGCCAGA----------------AACT---TAGAC............................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
....................TAGTG-ACGCAGCCAGA----------------AACT---.................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3
...........GGCGGGATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	3
..........AGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3
.........CAGGCGGGATATAGTG-ACGCA..............................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	1	2
.............................................................................................................................................................................................................................................TCGCAGCAGCAGCCACACAAC...........................	21	1	3.00	3	0	0	0	0	0	3
........................G-ACGCAGCCAGA----------------AACT---TAGAC............................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
....................TAGTG-ACGCAGCCAGA----------------AAC.....................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3
............GCGGGATATAGTG-ACGCAGCCAGA----------------AA......................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
...........................................................................................................................................................................................................................................CTTCGCAGCAGCAGCCACACA.............................	21	1	3.00	3	0	0	0	0	0	3
........................G-ACGCAGCCAGA----------------AACT---TAGACA...........................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.............CGGGATATAGTG-ACGCAGCCAGA----------------AA......................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
......................GTG-ACGCAGCCAGA----------------AACT---TA...............................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................................TCGCAGCAGCAGCCACACA.............................	19	1	2.00	2	0	0	0	0	0	2
...........GGCGGGATATAGTG-ACGCAGCCAGA----------------A.......................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
........................G-ACGCAGCCAGA----------------AACT---TAGACACAAT.......................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
..............GGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................CTTCGCAGCAGCAGCCACACAAC...........................	23	1	2.00	2	0	0	0	0	0	2
............GCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.....................................................AACT---TAGACACAATGGAG...................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
.........CAGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.............CGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
...................ATAGTG-ACGCAGCCAGA----------------AA......................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
....................TAGTG-ACGCAGCCAGA----------------AACT---TAGAC............................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................GCAGCAGCAGCCACACAAC...........................	19	1	2.00	2	0	0	0	0	0	2
................GATATAGTG-ACGCAGCCAGA----------------A.......................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
..................TATAGTG-ACGCAGCCAGA----------------AACT---.................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
....................TAGTG-ACGCAGCCAGA----------------AACT---TA...............................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................TTCGCAGCAGCAGCCACACAAC...........................	22	1	2.00	2	0	0	0	1	0	1
..............................AGCCAGA----------------AACT---TAGACACAAT.......................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
..................TATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
.........CAGGCGGGATATAGTG-ACGCAGCCA..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................CGCAGCCAGA----------------AACT---TAGACACAAT.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................ACAACTGGGGCCCCACTTTGCCCCCCT.....	27	1	1.00	1	0	0	0	0	0	1
............GCGGGATATAGTG-ACGCAGCCAGA----------------AAC.....................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
........ACAGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
................GATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........GGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........CAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................ATATAGTG-ACGCAGCCAGA----------------A.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........CAGGCGGGATATAGTG-ACG................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................TCGCAGCAGCAGCCACACAACTGGGGCCC...................	29	1	1.00	1	0	0	0	0	0	1
...........GGCGGGATATAGTG-ACGCAGCCA..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........ACAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................AGCAGCAGCCACACAACTGGGGCC....................	24	1	1.00	1	0	0	0	0	0	1
..........AGGCGGGATATAGTG-ACGCAGCCA..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................CGCAGCAGCAGCCACACAACT..........................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................G-TTTTGATTCG-ATGT--TGCAG..................................................	20	1	1.00	1	0	0	0	0	0	1
...................ATAGTG-ACGCAGCCAGA----------------AAC.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........GGCGGGATATAGTG-ACGCAGCCAGA----------------AA......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............CGGGATATAGTG-ACGCAGCCAGA----------------A.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................AGCCAGA----------------AACT---TAGACACAATGGAGA..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..................TATAGTG-ACGCAGCCAGA----------------AA......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................TG-ACGCAGCCAGA----------------AACT---TAGACA...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........ACAGGCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
............GCGGGATATAGTG-ACGCAG.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
A------TACAGGCGGGATATAGTG-AC.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................CTTCGCAGCAGCAGCCACA...............................	19	1	1.00	1	0	0	0	0	0	1
.................ATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................GCAGCAGCCACACAACTGGGGCCC...................	24	1	1.00	1	0	0	0	0	0	1
.................ATATAGTG-ACGCAGCCAGA----------------AACT---TAGA.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..........................ACGCAGCCAGA----------------AACT---TAGACACAAT.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.....................................................AACT---TAGACACAATGGAGAGC................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................CACAACTGGGGCCCCACTTTGCCCC........	25	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................AGCTTCGCAGCAGCAGCCACACA.............................	23	1	1.00	1	0	0	0	0	0	1
..............GGGATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................AGTG-ACGCAGCCAGA----------------AAC.....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..............................AGCCAGA----------------AACT---TAGACACA.........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........AGGCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................ACACAACTGGGGCCCCACT...............	19	1	1.00	1	1	0	0	0	0	0
.........CAGGCGGGATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................ATATAGTG-ACGCAGCCAGA----------------AA......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................ATATAGTG-ACGCAGCCAGA----------------AACT---TA...............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................CGCAGCAGCAGCCACACAAC...........................	20	1	1.00	1	0	0	0	0	0	1
...............GGATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......TACAGGCGGGATATAGTG-ACGCAGCCA..........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
A------TACAGGCGGGATATAGTG-ACGCAGC............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............GGATATAGTG-ACGCAGCCAGA----------------AACT---.................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................ACGCAGCCAGA----------------AACT---TAGAC............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
......................GTG-ACGCAGCCAGA----------------AACT---TAGACA...........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
......................GTG-ACGCAGCCAGA----------------AACT---.................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
....................TAGTG-ACGCAGCCAGA----------------AACT---TAGACAC..........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...........GGCGGGATATAGTG-ACGCAGA............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................A----------------AACT---TAGACACAATGGAGAGC................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................TTCGCAGCAGCAGCCACACA.............................	20	1	1.00	1	0	0	0	0	0	1
..................................AGA----------------AACT---TAGACACAATGGAGAGC................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................TATAGTG-ACGCAGCCAGA----------------AAC.....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............CGGGATATAGTG-ACGCAGCCAGA----------------........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
.......TACAGGCGGGATATAGTG-ACGCAGCC...........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................GA----------------AACT---TAGACACAATGGAGA..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......TACAGGCGGGATATAGTG-ACGC...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................GTG-ACGCAGCCAGA----------------AACT---T................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................TAGTG-ACGCAGCCAGA----------------AACT---T................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............CGGGATATAGTG-ACGCAGCCA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................GCAGCAGCAGCCACACAACTGGGGCCC...................	27	1	1.00	1	0	0	0	0	0	1
...................ATAGTG-ACGCAGCCAGA----------------A.......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1

droBip1

A------TACAGGCGGGATATAGTG-ACGCAGCCAGA----------------AACT---TAGACACAATGGAGAGGTAGGATTC-ATGGTGGAT------------GCT--TCTCAGATCCAT-G--G---------------------------------------AATGATT--------T--AATT-------TG---------AG-G-TTTTGCTTCG-ATGT--TGCAGCTTCGCAGCAGCAGCCACACAACTGGGGCCCCACTTTGCCCCCCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AG--ATTTATAGGCGGGCTATAGTG-ACACA-CAAAT-AAC-----TGGGAAAAATA---AAATCACAATGGATAGGTAGGAAG-----------AT---------------CTACATACTCG-TA--G-ATGATGG-------------------------------GATGA--------CCT--ATACCCT------------------A-TT---------TTGT--TGCAGCTTTGCAGCAGTAGCCACACAATTGGGGCCGCATTTCGCAGCCCTTTCGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................G-ACACA-CAAAT-AAC-----TGGGAAA........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATAGGCGGGCTATAGTG-AC.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................AATTGGGGCCGCATTTCGCAGCCC......	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

AG--TTTTATAGGCGGGATATAGTG-ACACA-CAAAT-AAC-----TGGGAAAAATA---AAATCACAATGGATAGGTAGGAAG-----------AT---------------CTACATACTCG-TA--G-ATGATGG-------------------------------GATGA--------CCT--ATACCCT------------------A-TT---------TTGT--TGCAGCTTTGCAGCAGTAGCCACACAATTGGGGCCGCATTTCGCAGCCCTTTCGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........TAGGCGGGATATAGTG-ACAC...............................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	1	1	0
..........................ACACA-CAAAT-AAC-----TGGGAAAAC......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...........GGCGGGATATAGTG-ACACA-CA...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0

droWil2

AAGAATTTATAGACGGGATATAGTG-TAAATACAAAAAAAAAAAACCACCAAAAACAT--TTATTAAAATGGAAAGGTAGATGTTT-------------GAA----------------ATTTT-CT--GGCGA-----AT----TCTTTGTTCCACACTGA-----T----TG--------CGT--GT------------------------------ATTCC-TTTT--GTTAGCTTTATATCATCAGCAGCACAGCTGGGGCCCCATTTCGCCCCACTATCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........TAGACGGGATATAGTG-TAAATACA...........................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	3
..........AGACGGGATATAGTG-TAAATACA...........................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	3
...........GACGGGATATAGTG-TAAA...............................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	3
.......TATAGACGGGATATAGTG-TAAATACA...........................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2
........ATAGACGGGATATAGTG-TAAATACA...........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2
...........GACGGGATATAGTG-TAAAT..............................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2
......TTATAGACGGGATATAGTG-TAAAT..............................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2
..............GGGATATAGTG-TAAATACAAAAA.......................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2
.......TATAGACGGGATATAGTG-TA.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
............ACGGGATATAGTG-TAAATA.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
........ATAGACGGGATATAGTG-TAAATAC............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
.............CGGGATATAGTG-TAAATACAAA.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
.........TAGACGGGATATAGTG-TAAATA.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
............................................................................GTAGATGTTT-------------GAA----------------ATTTT-CT--.............................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........GACGGGATATAGTG-TAAATACA...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
.........TAGACGGGATATAGTG-TAAATAC............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
............ACGGGATATAGTG-TAAATACAAA.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
..........................................................................................................................................................ACACTGA-----T----TG--------CGT--GT------------------------------ATTCC-TTTT--GTT....................................................	27	1	1.00	1	0	0	0	0	1
.......TATAGACGGGATATAGTG-TAAA...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
...........GACGGGATATAGTG-TAAATACAA..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
...........GACGGGATATAGTG-TAAATACAAAAA.......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
.............CGGGATATAGTG-TAAATACAA..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
.........TAGACGGGATATAGTG-TAAAT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
..........AGACGGGATATAGTG-TAAATACAAA.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1

droVir3

AG--C--TAAAGCCGGGATATAGTG-CAAAAGCGGAT----------------ATTT-AAAATTCAAAATGGAGAGGTAAGCCT---------------GGGACAAAGCAATCT------TTA-TG--G-ATAATAC-------------------------------AATTT--------CGT--GTAA------------------AA-C-ATTTG---------TTGCGCAGCTTCGCAGCAGTTGCCACACAGCTGGGTCCACACTTTGCCGCCCTGTCCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................AAGCGGAT----------------ATTT-AAAATTC............................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGGGATATAGTG-CAAAAGCGGAT----------------AT......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.............CGGGATATAGTG-CAAAAGCGG..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........AAGCCGGGATATAGTG-CAAAAGCGGAT----------------........................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAAGCCGGGATATAGTG-CAA................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................TT-AAAATTCAAAATGGAGAGC................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

AA--C--TTAAGCCGGGATCTAGCGGATACA-C-----------------------A---AATTCACAATGGAAAGGTAAGCGG----------------------------------G-CCATCG--G---------ATAATGCTTATAGTATATATTGT-----T-----------------------------TA-------TA-AA-C-AT----TTCT-GTGTTGCGTAGCTTTGCAGCAGTAGCCACACAGCTGGGGCCACACTTTGCCCCACTGTCCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................AGCTTTGCAGCAGTAGCC..................................	18	1	1.00	1	0	0	0	1	0	0
..............GGGATCTAGCGGATACA-C-----------------------.....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...................................................................................G----------------------------------G-CCATCG--G---------ATAATGCTTATT.......................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
........TAAGCCGGGATCTAGCGGAT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
....C--TTAAGCCGGGATCTAGCGGA..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................AGCAGTAGCCACACAGCTGGGGCC....................	24	1	1.00	1	0	0	0	1	0	0
.............................................................................................................................................................................................................................................TTGCAGCAGTAGCCACACAGCTGGGGCC....................	28	1	1.00	1	0	0	1	0	0	0

droGri2

AG--C--AAAAGCCGGGATATAGTG-CTAATACCAAT----------------ACGA---GATTCGAAATGGAGAGGTAGGCT-AT-------------GAGAT--------T----GATCAATTGTAG-AGG-----ATGATCC--TTGT-----------------------------------CTCA----------TACATAT-----------ATCCTTTTTG--TGCAGCTTTGCAGCAGTAGCAACACAACTGGGGCCACACTTTGCCCCACTGTCCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........AAAGCCGGGATATAGTG-CTAATACC...........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0

dsi_29922

3r:5570708-5570771 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.6	-16.5