ID:

dsi_299

 Coordinate:

3r:5819655-5819727 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.5 -28.1 -28.0

Flybase annnotation

utr5 [utr5_minus_9535]; five_prime_UTR [3r_5819662_5820181_+]

No Repeatable elements found

Sense Strand Reads

AACAGAACAGCTGTTTGCCGTTTTTAATAAACAATCGTCGGCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCACCCATCGCTCTTGGCCAGCTCGTTCCAACGGGCCTAAACGGTTCCGACAAGCGCACTAACCAAGGCAGCAAAAAGGAAAAG

******************************************(((..((((.(((..((((.((.(((((((....((((.......))))......))))))).)).)))).)))))))...))).....****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934

dsim w501 ovaries

 M023

head

 SRR553486

Makindu_3 day-old ovaries

 SRR553485

Chicharo_3 day-old ovaries

 SRR902009

testis

 GSM343915

embryo

 SRR553488

RT_0-2 hours eggs

 O002

Head

 SRR553487

NRT_0-2 hours eggs

 M025

embryo

 O001

Testis

 M024

male body
..............................................................................................CATCGCTCTTGGCCAGCTCGTT......................................................... 22 0 1 13.00 13 2 1 5 5 0 0 0 0 0 0 0 0
.................................ATCGACGGCGGTGTTTGGC......................................................................................................................... 19 2 3 8.33 25 22 0 0 0 0 0 2 0 1 0 0 0
..............................................................................................CATCGCTCTTGGCCAGCTCGT.......................................................... 21 0 1 4.00 4 0 0 0 0 0 3 0 1 0 0 0 0
.................................ATCGACGGCGGTGTTTGGCA........................................................................................................................ 20 2 3 3.67 11 7 0 1 1 0 0 1 0 1 0 0 0
..................................TCGACGGCGGTGTTTGGC......................................................................................................................... 18 2 9 2.11 19 10 0 0 1 0 0 4 0 4 0 0 0
...............................................................................................ATCGCTCTTGGCCAGCTCGTT......................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGTTTGTGAGGAGCGTTCGGCGGA............................................................................................ 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0
.................................ATCGACGGCGGTGTTTGGCACC...................................................................................................................... 22 3 3 1.67 5 3 1 0 0 1 0 0 0 0 0 0 0
..................................TCGACGGCGGTGTTTGGCACCT..................................................................................................................... 22 3 2 1.50 3 1 1 0 0 0 0 0 0 0 1 0 0
.................................ATCGACGGCGGTGTTTGG.......................................................................................................................... 18 2 5 1.40 7 1 0 1 0 0 0 4 0 1 0 0 0
................................TATCGACGGCGGTGTTTGGCA........................................................................................................................ 21 3 3 1.33 4 3 0 1 0 0 0 0 0 0 0 0 0
......................................CGGCGGTGTTTGGCA........................................................................................................................ 15 1 13 1.15 15 5 0 1 2 0 0 4 0 3 0 0 0
................................TATCGACGGCGGTGTTTGGC......................................................................................................................... 20 3 8 1.13 9 6 0 2 0 0 0 1 0 0 0 0 0
......................................................CTCAGTTTGTGAGGAGCG..................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................GCAGGCATCGCTCTTGGCCAGCTCGTT......................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GGCGGATACACATCGCACC............................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................GAGCGTTCGGCGGATACACATCG................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................CGTTCGGCGGATACACATCGCACC............................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTCCGACAAGCGCACTAACCAAGGCA.............. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................CGGATACACATCGCACCCATCGC......................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................CATCGCTCTTTGCCAGCTCGTT......................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................CGTTCGGCGGATACACATCGCACCCAT............................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TATCGCTCTTGGCCAGCTCGTT......................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................GAGGAGCGTTCGGCGGATACACATC.................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................GGCAGCAAAAAGGAAAAG 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GATACACATCGCACCCATCGCT........................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................TTGTGAGGAGCGTTCGGCGGATAC......................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................ATCGACGGCGGTGTTTGGCACCTC.................................................................................................................... 24 3 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................TGAGGAGCGTTCGGCGGATAC......................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................AGTTTGTGAGGAGCGTTCGGC............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................CATCGCTCTTGGCCAGCTC............................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................CCATCGCTCTTGGCCAGCTC............................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCGCACCCATCGCTCTTGGCCAGC.............................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................GAGCGTTCGGCGGATACACATC.................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................GGAGCGTTCGGCGGAT........................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CATCGCTCTTGGCCAGCTCGTTC........................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................CGACGGCGGTGTTTGGC......................................................................................................................... 17 2 20 0.60 12 7 0 0 0 0 0 3 0 2 0 0 0
...................................CGACGGCGTCGTTTGGCACCTC.................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................CGACGGCGGTGTTTGGCACCT..................................................................................................................... 21 3 4 0.50 2 0 0 0 0 0 0 1 0 1 0 0 0
..............................................................................................CATCGCTCTTGGCCAGCTCGTC......................................................... 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
............................ATACCATCGTCGGTGGCGTTT............................................................................................................................ 21 3 8 0.50 4 0 0 0 0 4 0 0 0 0 0 0 0
....................................GTCGGCGTCGTTTGGC......................................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................AACAATCGTCGGGGGC................................................................................................................................ 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
............................ATTCCATCGTCGGCGGCGTTT............................................................................................................................ 21 3 10 0.50 5 0 0 0 0 5 0 0 0 0 0 0 0
.................................ATCGACGGCGGTGTTTGGCACCT..................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................CGACGGCGGTGTTTGGCA........................................................................................................................ 18 2 10 0.50 5 3 0 0 0 0 0 1 0 1 0 0 0
............................AATCCATCGTCGGTGGCGTTT............................................................................................................................ 21 3 9 0.44 4 0 0 0 0 4 0 0 0 0 0 0 0
......................................CGGCGGTGTTTGGCACCT..................................................................................................................... 18 2 7 0.43 3 1 0 0 0 0 0 0 0 2 0 0 0
.................................ATCGACGGCGGTGTTTGGCAC....................................................................................................................... 21 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0
............................ATTCAATCGTCGGTGGCGTTT............................................................................................................................ 21 3 8 0.38 3 0 0 0 0 3 0 0 0 0 0 0 0
.................................ATCGACGGCGGGGTTTGGC......................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CTCTTGGCCAGCTCGT.......................................................... 16 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TCGACGGCGGTGTTTGGCACC...................................................................................................................... 21 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................TCGACGGCGGGGTTTGGCA........................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................TCGACGGCGGTGTTTGGCA........................................................................................................................ 19 2 6 0.33 2 1 0 1 0 0 0 0 0 0 0 0 0
..................................TCGACGGCGGTGTTTGG.......................................................................................................................... 17 2 20 0.30 6 0 0 3 0 0 0 2 0 1 0 0 0
................................................TGGTAGCTCAGTTGGTTAGG......................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
................................TATCGACGGCGGTGTTTGG.......................................................................................................................... 19 3 20 0.20 4 1 0 1 1 0 0 1 0 0 0 0 0
......................................CGGCGTCGTTTGGCACCT..................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................ATCGACGGCGGTGTTTG........................................................................................................................... 17 2 17 0.18 3 1 0 0 0 0 0 2 0 0 0 0 0
..................................TCGACGGAGTCGTTTGGCA........................................................................................................................ 19 3 20 0.15 3 0 0 2 0 0 0 1 0 0 0 0 0
.....................................ACGGCGTCGTTTGGCACCTC.................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................GAGCGTTCGGTGGAT........................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................CCTCGGCGGCGTGTGGC......................................................................................................................... 17 2 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0
............................ATACAATCGTCGGTGGCGTTC............................................................................................................................ 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................GACGGCGTCGTTTGGCACCT..................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
................................TATCGACGGCGGGGTTTGG.......................................................................................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................TCGACGGCGGGGTTTGG.......................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
................................TATCGACGGCGGAGTTTGG.......................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................TCGACGGCGGTGTTTGGCC........................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................CGGCGACGTTTGGGGGCTC.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTGTCTTGTCGACAAACGGCAAAAATTATTTGTTAGCAGCCGCCGCAAACCGTCGAGTCAAACACTCCTCGCAAGCCGCCTATGTGTAGCGTGGGTAGCGAGAACCGGTCGAGCAAGGTTGCCCGGATTTGCCAAGGCTGTTCGCGTGATTGGTTCCGTCGTTTTTCCTTTTC

******************************************(((..((((.(((..((((.((.(((((((....((((.......))))......))))))).)).)))).)))))))...))).....****************************************** 		Read size # Mismatch Hit Count Total Norm Total M024

male body		 SRR553488

RT_0-2 hours eggs

 M023

head

 SRR553486

Makindu_3 day-old ovaries

 GSM343915

embryo

 M025

embryo

 M053

female body

 SRR902009

testis

 SRR553485

Chicharo_3 day-old ovaries

 SRR618934

dsim w501 ovaries
...................CAAAAACTATTTGTCAGC........................................................................................................................................ 18 2 9 7.89 71 42 7 18 4 0 0 0 0 0 0
...................CAAAAACTATTTGTCAGCGG...................................................................................................................................... 20 3 12 1.42 17 13 0 2 0 0 0 1 1 0 0
...................CAAAAACTATTTGTCAGCG....................................................................................................................................... 19 3 20 0.90 18 13 1 4 0 0 0 0 0 0 0
...................CAAAAATCATTTGTCAGC........................................................................................................................................ 18 2 12 0.50 6 0 5 0 0 0 1 0 0 0 0
.............................................................................................................................................TCGCGAGATTGGTTC................. 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................CAAAAATCATTTGTCAGCGG...................................................................................................................................... 20 3 11 0.27 3 0 3 0 0 0 0 0 0 0 0
...................CAAAAATGATTTGTCAGC........................................................................................................................................ 18 2 11 0.27 3 1 2 0 0 0 0 0 0 0 0
..................ACAAAAATTATTTGTCAGC........................................................................................................................................ 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...................................................................CTCGCAAGACGCCAAAGTGT...................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................GTTCGCGAGATCGGTTC................. 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
.....................AAAATCATTTGTTAGCGGTC.................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.................................................CCGTCGAGTCAAAGAAT........................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................AAATTATTTGTCAGC........................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 3r:5819605-5819777 + dsi_299 candidate-rescued AAC-----------------------AGAACAGCTGTTTGC-------CGTT--------------------------------TTTAATAAACAATCGTCGGCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------ACCAAGGCAG----------CAAAAA-GGA----------AAA-G
droSec2 scaffold_25:330122-330294 + dse_373 candidate-rescued AAC-----------------------AGAACAGCTGTTTTC-------CGTT--------------------------------TTTAATAAACAATCGTCGGCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------ACCAAGGCAT----------CAAAAA-GGA----------AAA-G
dm3 chr3R:15446745-15446914 - dme-mir-9373 Known_mirbase AAC-----------------------AGAACAGCTGTTTGC-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------GCCAAGTCAT----------CAGAAA-GGA----------AAA-G
droEre2 scaffold_4770:6195240-6195415 + der_152 confident AGC-----------------------AGAACAGCTGTTTGCCGCTTGCCGTT--------------------------------TTTAATAAACAATCG---TCGGCGCTGGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CTCAACG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AG-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------GCCACGGCAC-----------ATAGC-GGA----------AAA-G
droYak3 3R:4200631-4200799 - dya_180 FALSE TTC-----------------------AGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-TCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------ACCAAGGCAT-----------ATAAC-GGA----------AAA-G
droEug1 scf7180000409804:1738771-1738937 - AAC-----------------------AGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTTAACGG-------------------TTCCGTCA-AGCGCACTAATAAAG--------------------CCAA----------A-AAAC---T----------AAA-A
droBia1 scf7180000302402:1225579-1225742 - AAC-----------------------AGAACAGCTGTTTGG-------CGTT---------------------------------TTAATAAACAATCG---TCGGCGGTCCGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-CA-CGGGC-CTTAACGG-------------------TTCCGCAGAAGCGCACTAACAAAG--------------------CCAA----------CA-------A----------ATA-T
droTak1 scf7180000415710:373989-374173 + AAC-----------------------AGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CTTATCG--CTCTT----------------------------------------G---GCCAGCTCGTCCGTCCC-AA-CGGGC-CTTAACGG-------------------TTCCGCCAAAGCGCACTAATAAAG--------------------CCAAAAAAAAACAATAAAAA-ATA----------AAA-T
droEle1 scf7180000486474:73289-73447 - ---------------------------GAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-TATATCG--CTC-T----------------------------------------G---GCCAGC----TCGTCCCAAA-CGGGC-CTAAACGG-------------------TTCCGCCC-AGCGCACCAACAAAG--------------------CCAA----------A--------A----------AAT-A
droRho1 scf7180000777417:2822-2982 + ---------------------------GAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGAAACACATCGCA-CCCATCG--CTCTG----------------------------------------GCCAGCCAGC----TCGTCCCAAA-CGGGC-CTAAACGG-------------------TTCCGCCA-AGCGCACTAACAAAG--------------------ACA--------------------A----------AAA-A
droFic1 scf7180000454126:452559-452720 - ---------------------------GAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGCTGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTAATAAAG--------------------CCAA--------------AA-CAA----------AAT-A
droKik1 scf7180000302666:176851-177042 + AGC-----------------------GGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTAGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGACACACATCGCAACTAATCGAGCTC-T----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGCCA-AGCGC--T---AAAGCCCAGCAA-CAAAGG-----CCAA----------A-AGAACAAAAAAGTTTTGAAAACA
droAna3 scaffold_13340:14953865-14954063 + dan_4069 ACG-----------------------CGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGTAGCTCAGTCTGTGAGGAGTATTCAGCGGATACACATCGCCAGCCATCG--CC----------------------------AGTTTGTGCTTTTGTG---GCCAGC----TCGTCCC-AC-CGGGC-CAACGCGG-------------------TTCCGCCA-AACT--G----AAAGCAAAACTAATAATTT-----TC---AAAAATCCATAAAAA-CTC----------AAA-A
droBip1 scf7180000395971:233363-233548 - ACG-----------------------CGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGTAGCTCAGTCTGTGAGGAGTATTCAGCGGATACACATCGCTAGCCATCG--CC----------------------------AGTCTGTGCTTTTGTG---GCCAGC----TCGTCCC-AC-CGGGC-CAACGCGG-------------------TTCCGCCA-AATT--G----AAAGCAAAAACAA-----------CAAT----------TTTTCC-TAC----------AAA-A
dp5 2:29955589-29955824 - dps_3850 TGT----------------TCG----AGAACAGCTGTTTGG-------CATT-------------------------------TTTTAATAAACAATCGA-GTCGGCATTTGGCAGTTCAGTCTGTGAGGAGCATTCGGTGGATACACAACGCA-C-CATCG--CA--TCGCATCGAACGTACTACGACGCTCTAGATTGTACCGTC--G---GCC-G-----CCGACAA-AA-CGGGC-CTAAACGGGTGCCCCTCACATACATAATT-CGGCA-AAAACATAA--------------------AACAAAACAG-----------ACAAC-AAAAAAACGGGGAAAA-C
droPer2 scaffold_6:5324852-5325094 - dpe_2520 GAACGCTCTCTGAGCGTGTTCG----AGAACAGCTGTTTGG-------CATT-------------------------------TTTTAATAAACAATCGA-GTCGGCATTTGGCAGTTCAGTCTGTGAGGAGCATTCGGTGGATACACAACGCA-C-CATCG--CA--TCGCATCGAACGTACTACGACGCTCTAGATTGTACCGTC--G---GCC-G-----CCGACAA-AA-CGGGC-CTAAACGGGTGCCCCTCACATACATAATT-CGGCA-AAAACATAA--------------------AACAAAACAG----------A-CAAC-AAAA---------AAA-C
droWil2 scf2_1100000004902:8358767-8358885 + ATC-----------------------CTAACAGCTGTTTGT-------GGATTTTATTGTTGTTATTTTTTTTTTTTTTTTTTGTTTATTAAACAATCTACTTTGCCCGGTGGAAGCTCAGTCTGTGAAAAACATTTCGCGGATAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:16137592-16137739 + dvi_24651 AGC-----------------------CGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAAACT---GCGGCATTGGTTGAGTCAGTACGCAAAAGACACTTCGTGGATACACATCGCT-A--AAGA--TACTC----------------------------------------G---TGCGGC----ACGTTAC-AAGTGCGCGCTAAACGG-------------------G-------------------------------------------CCGT----------TCGCCA-GAA----------CAC-A
droMoj3 scaffold_6540:14941670-14941767 + AAC----------------ACGCAGTCGAACAGCTGTTTCT-------CGTT--------------------------------TTTAATAAACAAACCGACGCGCCGACAGTTAGCTCAGTACGCAAAAGACACTTCGTGGATACACATCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15116:993644-993820 + AGT-----------------------CGAACAGCTGTTTGT-------TGTT--------------------------------TATTATAAACAAACG---GCGGCGTTGTCTGGCTCAGTACGCAAAAGATACTTCGTGGATACACATCGC----TAGAG--ATATT----------------------------------------C---GCGGGC----ACGTTAC-AAGCGCGCGCTAAACGG-------------------GC-CGTT----CGTCAGAACACAG-----ACC-CAA-AACCAAAGCAA----------T-CAGC-AGC----------CAA-C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAC-----------------------AGAACAGCTGTTTGC-------CGTT--------------------------------TTTAATAAACAATCGTCGGCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------ACCAAGGCAG----------CAAAAA-GGA----------AAA-GSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................22113.001310000055002000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2114.00400000100000300000
..............................................................................................................................................................ATCG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................2112.00200000000002000000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGA...............................................................................................................................................................................................................2412.00200200000000000000
....................................................................................................................CTCAGTTTGTGAGGAGCG........................................................................................................................................................................................................................1811.00100000100000000000
.........................................................................................................................................GGCGGATACACATCGCA-CC.................................................................................................................................................................................................1911.00110000000000000000
.................................................................................................................................GAGCGTTCGGCGGATACACATCG......................................................................................................................................................................................................2311.00110000000000000000
....................................................................................................................................CGTTCGGCGGATACACATCGCA-CC.................................................................................................................................................................................................2411.00110000000000000000
...........................................................................................................................................................................................................................................................................TTCCGACA-AGCGCACTA--------------------ACCAAGGCA....................................2611.00100000010000000000
...........................................................................................................................................CGGATACACATCGCA-CCCATCG--C.........................................................................................................................................................................................2311.00100000100000000000
....................................................................................................................................CGTTCGGCGGATACACATCGCA-CCCAT..............................................................................................................................................................................................2711.00110000000000000000
..............................................................................................................................GAGGAGCGTTCGGCGGATACACATC.......................................................................................................................................................................................................2511.00100000000000001000
......................................................................................................................................................................................................................................................................................................................GGCAG----------CAAAAA-GGA----------AAA-G1811.00100000000001000000
.............................................................................................................................................GATACACATCGCA-CCCATCG--CT........................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................TTGTGAGGAGCGTTCGGCGGATAC............................................................................................................................................................................................................2411.00100000000000001000
.............................................................................................................................TGAGGAGCGTTCGGCGGATAC............................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGC..................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TC.............................................................................................................................1911.00100000100000000000
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TC.............................................................................................................................2011.00110000000000000000
.....................................................................................................................................................TCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----...............................................................................................................................2411.00100000000000100000
.................................................................................................................................GAGCGTTCGGCGGATACACATC.......................................................................................................................................................................................................2211.00110000000000000000
................................................................................................................................GGAGCGTTCGGCGGAT..............................................................................................................................................................................................................1611.00100000000001000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTC.........................................................................................................................2311.00100001000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTC..........................................................................................................................2220.50100000000010000000
....................................................................................................................................................................CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................1630.33100000000001000000
droSec2
AAC-----------------------AGAACAGCTGTTTTC-------CGTT--------------------------------TTTAATAAACAATCGTCGGCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------ACCAAGGCAT----------CAAAAA-GGA----------AAA-GSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................21141.00411141511
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................22124.002435124
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2213.0030111
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2011.0010100
...............................................................................................................................................................................................................................................................................GACA-AGCGCACTA--------------------ACCAAGG......................................2011.0011000
................................................................................................................................................ACACATCGCA-CCCATCG--CT........................................................................................................................................................................................1911.0010010
.................................................................................................................................................................................................................................................................................................................ACCAAGGCAT----------CAAAAA-GGA----------.....1911.0010010
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTA.........................................................................................................................2311.0010100
...........................................................................................................................................................CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2211.0010010
..............................................................................................................................................................ATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2011.0010100
................................................................................................................................................................................................................................................CTAAACGG-------------------TTCCGACA-AGCGCACT..................................................................2411.0010010
.....................................................................................................................................................TCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TC.............................................................................................................................2611.0010010
..................................................................................................................................................................................................................................TTCC-AA-CGGGC-CTAAACGG-------------------TTCCG..............................................................................2411.0010010
....................................................................................................................................................ATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCA.....................................................................................................................................2311.0010010
......................................................................................................................................................................CTT----------------------------------------G---GCCAGC----TCGTTCC-AA-CGGGC-CTAAA.........................................................................................................2911.0010010
..............................................................................................................................................ATACACATCGCA-CCCATCG--C.........................................................................................................................................................................................2011.0010010
......................................................................................................................................................CGCA-CCCATCG--CTCTT----------------------------------------G---GCC......................................................................................................................................2011.0010010
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTC.........................................................................................................................2311.0010010
................................................................................................................................GGAGCGTTCGGCGGATACACATCG......................................................................................................................................................................................................2411.0011000
...........................................................................................................................................CGGATACACATCGCA-CCCATCG--CTCT......................................................................................................................................................................................2611.0011000
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2111.0010001
.............................................................................................................................................GATACACATCGCA-CCCATCG--..........................................................................................................................................................................................2011.0010010
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGATA.............................................................................................................................................................................................................2611.0011000
dm3
AAC-----------------------AGAACAGCTGTTTGC-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------GCCAAGTCAT----------CAGAAA-GGA----------AAA-GSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................211396.00396000000000000000000000000002000000001000100100010010000000000000000000000000000000000000000000000000000000300000000000000000000000000000001000000001001511000000020000011000000000101000000000000001020000000000000000204061200142210020000210000100010119000140000000700000002001100015000110200120010123000000012050300000013931453101302070
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTC..........................................................................................................................221192.001920000000000000000000000000000000000001000100000001120000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000003003060000000000000000000000000010010000002000000000000000000000000004423511404582010000022010000000000200001000000100000001401090208000000022000013221002001540401003001002012120020460
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................22180.00800000000000000000000000010010000000000000001000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020020000001000001000000001000200000001000000000000000100000000000210110013031001000022010010000000000000000000010000001100100005000000000100000000000000120000000000011200010030220
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................20148.00480000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010002000000000000100000000000000000000001000000000000000000000001002000000010000000000000000001010100000000000000200000000000004000120000000000000000000010200000100001010000010180
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCC.........................................................................................................................23128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200101100000000000000000000001000000000000000000000010000002000000010000000000000000000001000000010000010010110
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGC..................................................................................................................................................................................................................21119.0019000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110200000000000001000000000000000000001000000000000000000000000001000000000000011020000200000100100011000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGG...................................................................................................................................................................................................................20119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000011000000000000000000000000000000100000010000000000000001200000010010000011001000010000000001000001000020000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCG.................................................................................................................................................................................................................22116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000011000000001000000000000000000000000002000000000000000000100000010000000000000201000000000100010000010000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGA...............................................................................................................................................................................................................24114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000200000000000000000000010000100000000000000000000000100000000000000010000000200010000001000000000010010
..............................................................................................................................................................ATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000100000000000000000000000010000000000000000000000060
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000060
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTA..........................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000010000000000000011000000000000000010000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-.......................................................................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................ACACATCGCA-CCCATCG--C.........................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GTCAT----------CAGAAA-GGA----------AAA-G1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTGTGAGGAGCGTTCGG...................................................................................................................................................................................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................GCGTTCGGCGGATACACATCG......................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000
...............................................................................................................................AGGAGCGTTCGGCGGATA.............................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000
...........................................................................................................................................CGGATACACATCGCA-CCCATCG--..........................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTT.........................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................CGTTCGGCGGATACACAT........................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
.......................................................................................................................AGTTTGTGAGGAGCGTTCG....................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................ATCG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010
......................................................................................................................CAGTTTGTGAGGAGCGTTCGGCGGA...............................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGATA.............................................................................................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................AGGAGCGTTCGGCGGATAC............................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................................................................................GCGTTCGGCGGATACACAT........................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTA...........................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
................................................................................................................................................ACACATCGCA-CCCATCG--CT........................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGG...........................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGG................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CGACA-AGCGCACTA--------------------GCCAAG.......................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GC-CTAAACGG-------------------TTCCGACA-AGCG......................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGC...........................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................TTTGTGAGGAGCGTTCGGC..................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CT............................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGTGAGGAGCGTTCGGCGGATAC............................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AACGG-------------------TTCCGACA-AGCGCACTA--------------------GC...........................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................................................................ATCG--CTCTT----------------------------------------G---GCCAGC----TCGTC..........................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGAT..........................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................C----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCG..............................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CGGATACACATCGCA-CCC................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-A......................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................GCCAAGTCAT----------CAGAAA-GG................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGTGAGGAGCGTTCGGCGGATA.............................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GCGCACTA--------------------GCCAAGTCAT----------CAGAAA-GGA----------.....2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................CTAAACGG-------------------TTCCGACA-AGCGC.....................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................G--CTCTT----------------------------------------G---GCCAGC----TCGTC..........................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................A-CCCATCG--CTCTT----------------------------------------G---GCCAG....................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................TTTGTGAGGAGCGTTCGGCGGATAC............................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................CGGATACACATCGCA-CCCA...............................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AGTTTGTGAGGAGCGTTC.....................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................G--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGG...............................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGTGAGGAGCGTTCGGC..................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTCGGCGGATACACATCG......................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GATACACATCGCA-CCCATCG--CT........................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTGTGAGGAGCGTTCGGCG.................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................TGTGAGGAGCGTTCGGCGG................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGGGC-CTAAACGG-------------------TTCCGACA-AGCGC.....................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................GGAGCGTTCGGCGGATACACATCGCA-C..................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGAT..............................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................TTTGTGAGGAGCGTTCGGCGG................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GCGCACTA--------------------GCCAAGTCAT----------CAGAAA-GGA----------A....2811.001000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----T..............................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................GATACACATCGCA-CCCATCG--..........................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................AGTTTGTGAGGAGCGTT......................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATACACATCGCA-CCCATCG--C.........................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................GCA-CCCATCG--CTCTT----------------------------------------G---GCCAG....................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................AGCGTTCGGCGGATACACATC.......................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTG..........................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGATAC............................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................AGGAGCGTTCGGCGGATACACATCGCA-...................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................CGTCCC-AA-CGGGC-CTAAA.........................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CACATCGCA-CCCATCG--CT........................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTCCGACA-AGCGCACTA--------------------G............................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GCCAAGTCAT----------CAGAAA-GGA----------AAA-G2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................................CCAAGTCAT----------CAGAAA-GGA----------.....1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................TCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CG..................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................GGAGCGTTCGGCGGATACACATC.......................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAAGTCAT----------CAGAAA-GGA----------AAA-G2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................ATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ACGG-------------------TTCCGACA-AGCGCA....................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCT-.......................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGTGAGGAGCGTTCGGCGGA...............................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CG..................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGCGTTCGGCGGATACACATCGCA-CCC................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGTGAGGAGCGTTCGGCG.................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GAGCGTTCGGCGGATACACAT........................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................CGACA-AGCGCACTA--------------------GCCAAGT......................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGATACA...........................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................T----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTA...........................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCC.........................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................ACACATCGCA-CCCATCG--CTCTT----------------------------------------G---G........................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTTTT-.......................................................................................................................2420.501000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGC-----------------------AGAACAGCTGTTTGCCGCTTGCCGTT--------------------------------TTTAATAAACAATCG---TCGGCGCTGGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CTCAACG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AG-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------GCCACGGCAC-----------ATAGC-GGA----------AAA-GSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................................................TCAACG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................22150.0050561317180
.............................................................................................................................................................CAACG--CTCTT----------------------------------------G---GCCAGC----TCGTC..........................................................................................................................22114.00142510330
............................................................................................................................................................TCAACG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2117.0071010320
.............................................................................................................................................................CAACG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2117.0071000240
.............................................................................................................................................................CAACG--CTCTT----------------------------------------G---GCCAGC----TCGTCC.........................................................................................................................2314.0041100020
.............................................................................................................................................................CAACG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................2212.0020000020
...........................................................................................................................TGTGAGGAGCGTTCGGCGGA...............................................................................................................................................................................................................2012.0020001010
......................................................................................................................................................CGCA-CTCAACG--CTCTT----------------------------------------G---GCCAGC----...............................................................................................................................2311.0011000000
........................................................................................................................................................................................................................AGC----TCGTCCC-AG-CGGGC-CTAAACGG-------------------...................................................................................2511.0011000000
.......................................................................................................................................................................................................................................................................................GCACTA--------------------GCCACGGCAC-----------ATAGC-GGA----------A....2511.0010100000
..........................................................................................................................TTGTGAGGAGCGTTCGGCGG................................................................................................................................................................................................................2011.0011000000
....................................................................................................................................................ATCGCA-CTCAACG--CTCTT----------------------------------------G---G........................................................................................................................................2011.0011000000
.....................................................................................................................................GTTCGGCGGATACACATCGC.....................................................................................................................................................................................................2011.0010100000
.....................................................................................................................TCAGTTTGTGAGGAGCGTTC.....................................................................................................................................................................................................................2011.0010000010
..............................................................................................................................................................AACG--CTCTT----------------------------------------G---GCCAGC----TCGTA..........................................................................................................................2111.0011000000
..........................................................................................................................................GCGGATACACATCGCA-CTCAACG--C.........................................................................................................................................................................................2411.0010100000
.............................................................................................................................................................................................................................................GC-CTAAACGG-------------------TTCCGACA-AGCGCACT..................................................................2611.0010100000
.................................................................................................................................................................................................................................................................................CA-AGCGCACTA--------------------GCCACGGCAC-----------ATAGC-..................2611.0010100000
................................................................................................................................................ACACATCGCA-CTCAACG--CTC.......................................................................................................................................................................................2011.0010100000
.............................................................................................................................................GATACACATCGCA-CTCAACG--CTCT......................................................................................................................................................................................2411.0010100000
...............................................................................................................................................TACACATCGCA-CTCAACG--CTCTT----------------------------------------G---GCC......................................................................................................................................2711.0010100000
...............................................................................................................................................................................................................................................................................GACA-AGCGCACTA--------------------GCCACGGCAG-----------........................2311.0010001000
............................................................................................................................................GGATACACATCGCA-CTCAACG--CC........................................................................................................................................................................................2311.0010100000
.................................................................................................................................................................................................................................................................................CA-AGCGCACTA--------------------GCCACGGC.....................................1911.0010100000
.....................................................................................................................................................TCGCA-CTCAACG--CTCTT----------------------------------------G---GCC......................................................................................................................................2111.0010100000
droYak3
TTC-----------------------AGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-TCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTA--------------------ACCAAGGCAT-----------ATAAC-GGA----------AAA-GSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................................................GCGGATACACATCGCA-TCCATCG--C.........................................................................................................................................................................................2421.50300300000000
.....................................................................................................................................GTTCGGCGGATACACATCGC.....................................................................................................................................................................................................2021.00200200000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2121.00201010000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTC..........................................................................................................................2221.00200100010000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGCGGA...............................................................................................................................................................................................................2421.00200110000000
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TCGT...........................................................................................................................2221.00200010100000
.....................................................................................................................................................................TCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-..............................................................................................................2520.50100010000000
................................................................................................................................................ACACATCGCA-TCCATCG--CTCTT----------------------------------------G---GC.......................................................................................................................................2520.50100010000000
.................................................................................................................................GAGCGTTCGGCGGATACACATCG......................................................................................................................................................................................................2320.50100000010000
.......................................................................................................................AGTTTGTGAGGAGCGTTCGGC..................................................................................................................................................................................................................2120.50100001000000
.............................................................................................................................................................CATCG--CTCTT----------------------------------------G---GCCAGC----TCGTT..........................................................................................................................2220.50100100000000
..................................................................................................................................................................................................................................................................................A-AGCGCACTA--------------------ACCAAGGC.....................................1820.50100100000000
...............................................................................................................................................TACACATCGCA-TCCATCG--CT........................................................................................................................................................................................2020.50100010000000
............................................................................................................................................................CCATCG--CTCTT----------------------------------------G---GCCAGC----TCG............................................................................................................................2120.50100100000000
.............................................................................................................................................GATACACATCGCA-TCCATCG--CTCTT----------------------------------------G---.........................................................................................................................................2620.50101000000000
...............................................................................................................................................TACACATCGCA-TCCATCG--CTCTT----------------------------------------G---.........................................................................................................................................2420.50100010000000
..................................................................................................................................AGCGTTCGGCGGATACACATCGC.....................................................................................................................................................................................................2320.50100010000000
................................................................................................................................................................................................................................................................................ACA-AGCGCACTA--------------------ACCAAGGC.....................................2020.50100100000000
......................................................................................................................................................CGCA-TCCATCG--CTCTT----------------------------------------G---GCC......................................................................................................................................2020.50100100000000
.........................................................................................................................TTTGTGAGGAGCGTTCGGCGGATA.............................................................................................................................................................................................................2420.50100100000000
.............................................................................................................................................GATACACATCGCA-TCCATCG--C.........................................................................................................................................................................................2120.50100100000000
.........................................................................................................................................................A-TCCATCG--CTCTT----------------------------------------G---GCCAGC----T..............................................................................................................................2120.50100010000000
droEug1
AAC-----------------------AGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTTAACGG-------------------TTCCGTCA-AGCGCACTAATAAAG--------------------CCAA----------A-AAAC---T----------AAA-ASizeHit CountTotal NormTotal
No Reads
droBia1
AAC-----------------------AGAACAGCTGTTTGG-------CGTT---------------------------------TTAATAAACAATCG---TCGGCGGTCCGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-CA-CGGGC-CTTAACGG-------------------TTCCGCAGAAGCGCACTAACAAAG--------------------CCAA----------CA-------A----------ATA-TSizeHit CountTotal NormTotal
No Reads
droTak1
AAC-----------------------AGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CTTATCG--CTCTT----------------------------------------G---GCCAGCTCGTCCGTCCC-AA-CGGGC-CTTAACGG-------------------TTCCGCCAAAGCGCACTAATAAAG--------------------CCAAAAAAAAACAATAAAAA-ATA----------AAA-TSizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------GAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-TATATCG--CTC-T----------------------------------------G---GCCAGC----TCGTCCCAAA-CGGGC-CTAAACGG-------------------TTCCGCCC-AGCGCACCAACAAAG--------------------CCAA----------A--------A----------AAT-ASizeHit CountTotal NormTotal
No Reads
droRho1
---------------------------GAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTTGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGAAACACATCGCA-CCCATCG--CTCTG----------------------------------------GCCAGCCAGC----TCGTCCCAAA-CGGGC-CTAAACGG-------------------TTCCGCCA-AGCGCACTAACAAAG--------------------ACA--------------------A----------AAA-ASizeHit CountTotal NormTotal
No Reads
droFic1
---------------------------GAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGCTGCTCAGTTTGTGAGGAGCGTTCGGCGGATACACATCGCA-CCCATCG--CTCTT----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGACA-AGCGCACTAATAAAG--------------------CCAA--------------AA-CAA----------AAT-ASizeHit CountTotal NormTotal
No Reads
droKik1
AGC-----------------------GGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCATTAGGCAGCTCAGTTTGTGAGGAGCGTTCGGCGGACACACATCGCAACTAATCGAGCTC-T----------------------------------------G---GCCAGC----TCGTCCC-AA-CGGGC-CTAAACGG-------------------TTCCGCCA-AGCGC--T---AAAGCCCAGCAA-CAAAGG-----CCAA----------A-AGAACAAAAAAGTTTTGAAAACASizeHit CountTotal NormTotal
No Reads
droAna3
ACG-----------------------CGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGTAGCTCAGTCTGTGAGGAGTATTCAGCGGATACACATCGCCAGCCATCG--CC----------------------------AGTTTGTGCTTTTGTG---GCCAGC----TCGTCCC-AC-CGGGC-CAACGCGG-------------------TTCCGCCA-AACT--G----AAAGCAAAACTAATAATTT-----TC---AAAAATCCATAAAAA-CTC----------AAA-ASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................ATCGCCAGCCATCG--CC----------------------------AGTTTGTGCT..................................................................................................................................................2612.002020000
.............................................................................................................................................GATACACATCGCCAGCCATC.............................................................................................................................................................................................2011.001001000
.....................................................................................................................................ATTCAGCGGATACACATCGCCAGCC................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................CGTCCC-AC-CGGGC-CAACGCGG-------------------TTCCGC.............................................................................2711.001010000
...............................................................................................................................AGGAGTATTCAGCGGATA.............................................................................................................................................................................................................1811.001100000
...................................................................................................................................GTATTCAGCGGATACACATCGCC....................................................................................................................................................................................................2311.001010000
.....................................................................................................................................ATTCAGCGGATACACATCGCC....................................................................................................................................................................................................2111.001010000
...............................................................................................................................................TACACATCGCCAGCCATC.............................................................................................................................................................................................1811.001001000
...................................................................................................................................................CATCGCCAGCCATCG--CC----------------------------AGTTTGTGC...................................................................................................................................................2611.001010000
droBip1
ACG-----------------------CGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAATCG---TCGGCGTTTGGTAGCTCAGTCTGTGAGGAGTATTCAGCGGATACACATCGCTAGCCATCG--CC----------------------------AGTCTGTGCTTTTGTG---GCCAGC----TCGTCCC-AC-CGGGC-CAACGCGG-------------------TTCCGCCA-AATT--G----AAAGCAAAAACAA-----------CAAT----------TTTTCC-TAC----------AAA-ASizeHit CountTotal NormTotal
No Reads
dp5
TGT----------------TCG----AGAACAGCTGTTTGG-------CATT-------------------------------TTTTAATAAACAATCGA-GTCGGCATTTGGCAGTTCAGTCTGTGAGGAGCATTCGGTGGATACACAACGCA-C-CATCG--CA--TCGCATCGAACGTACTACGACGCTCTAGATTGTACCGTC--G---GCC-G-----CCGACAA-AA-CGGGC-CTAAACGGGTGCCCCTCACATACATAATT-CGGCA-AAAACATAA--------------------AACAAAACAG-----------ACAAC-AAAAAAACGGGGAAAA-CSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................................................................CGGTGGATACACAACGCA-C-.................................................................................................................................................................................................1911.0010001000000
.........................................................................................................................................................................CGCATCGAACGTACTACGACGCT..............................................................................................................................................................2311.0010100000000
.........................................................................................................................TCTGTGAGGAGCATTCGGTGGAT..............................................................................................................................................................................................................2311.0010000001000
...............................................................................................................................................TACACAACGCA-C-CATCG--CA--TCGCA.................................................................................................................................................................................2411.0010000100000
..........................................................................................................................CTGTGAGGAGCATTCGGTGG................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................CGCTCTAGATTGTACCGTC--G---GC.......................................................................................................................................2211.0010000100000
.......................................................................................................................AGTCTGTGAGGAGCATTCGGTGGA...............................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................A--TCGCATCGAACGTACTACGACGCT..............................................................................................................................................................2511.0010010000000
..........................................................................................................................................GTGGATACACAACGCA-C-CATCG--C.........................................................................................................................................................................................2311.0010010000000
.....................................................................................................................................................ACGCA-C-CATCG--CA--TCGCATCGAAC...........................................................................................................................................................................2411.0010010000000
.................................................................................................................................................................G--CA--TCGCATCGAACGTACT......................................................................................................................................................................1911.0010100000000
..............................................................................................................................................ATACACAACGCA-C-CATCG--C.........................................................................................................................................................................................1911.0010010000000
...........................................................................................................................TGTGAGGAGCATTCGGTGGA...............................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................GACGCTCTAGATTGTACC..................................................................................................................................................1811.0010000100000
....................................................................................................................................................AACGCA-C-CATCG--CA--TCGCAT................................................................................................................................................................................2011.0010000001000
..............................................................................................................................................ATACACAACGCA-C-CATCG--CA--......................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................TCGCATCGAACGTACTACGA..................................................................................................................................................................2011.0010000100000
droPer2
GAACGCTCTCTGAGCGTGTTCG----AGAACAGCTGTTTGG-------CATT-------------------------------TTTTAATAAACAATCGA-GTCGGCATTTGGCAGTTCAGTCTGTGAGGAGCATTCGGTGGATACACAACGCA-C-CATCG--CA--TCGCATCGAACGTACTACGACGCTCTAGATTGTACCGTC--G---GCC-G-----CCGACAA-AA-CGGGC-CTAAACGGGTGCCCCTCACATACATAATT-CGGCA-AAAACATAA--------------------AACAAAACAG----------A-CAAC-AAAA---------AAA-CSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................................................................................................................................ATACATAATT-CGGCA-AAAAC.....................................................................2013.003300000
.................................................................................................................................................................G--CA--TCGCATCGAACGTACTACGACG................................................................................................................................................................2513.003210000
..............................................................................................................................................................................CGAACGTACTACGACGCT..............................................................................................................................................................1812.002200000
....................................................................................................................................................AACGCA-C-CATCG--CA--TCGCATCGAACG..........................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................GTACCGTC--G---GCC-G-----CCGAC..........................................................................................................................1811.001100000
.........................................................................................................................TCTGTGAGGAGCATTCGGTGG................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................A-C-CATCG--CA--TCGCATCGAACG..........................................................................................................................................................................2111.001100000
.............................................................................................................................................................CATCG--CA--TCGCATCGAACGTA........................................................................................................................................................................2111.001100000
..............................................................................................................................................................ATCG--CA--TCGCATCGAACGTACTACGA..................................................................................................................................................................2611.001100000
.....................................................................................................................................................................................................................................................................ACATAATT-CGGCA-AAAAC.....................................................................1811.001100000
.......................................................................................................................AGTCTGTGAGGAGCATTCGGTGGATA.............................................................................................................................................................................................................2611.001000001
.................................................................................................................................................................G--CA--TCGCATCGAACGTACT......................................................................................................................................................................1911.001100000
droWil2
ATC-----------------------CTAACAGCTGTTTGT-------GGATTTTATTGTTGTTATTTTTTTTTTTTTTTTTTGTTTATTAAACAATCTACTTTGCCCGGTGGAAGCTCAGTCTGTGAAAAACATTTCGCGGATAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................AAAAACATTTCGCGGATAAG...........................................................................................................................................................................................................2011.00100010
.......................................................................................................TGCCCGGTGGAAGCTCAGTCTGTGA..............................................................................................................................................................................................................................2511.00100010
droVir3
AGC-----------------------CGAACAGCTGTTTGG-------CGTT--------------------------------TTTAATAAACAAACT---GCGGCATTGGTTGAGTCAGTACGCAAAAGACACTTCGTGGATACACATCGCT-A--AAGA--TACTC----------------------------------------G---TGCGGC----ACGTTAC-AAGTGCGCGCTAAACGG-------------------G-------------------------------------------CCGT----------TCGCCA-GAA----------CAC-ASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................................................CT-A--AAGA--TACTC----------------------------------------G---TGCGGC----ACG............................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000001000200000
......................................................................................................................................................CGCT-A--AAGA--TACTC----------------------------------------G---TGC......................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000011000000000
.......................................................................................................................AGTACGCAAAAGACACTTCG...................................................................................................................................................................................................................2012.0020000000000000000000000010000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................AC-AAGTGCGCGCTAAACG.......................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000001100000000
........................................................................................................................................................CT-A--AAGA--TACTC----------------------------------------G---TGCGGC----AC.............................................................................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AC-AAGTGCGCGCTAAACGG-------------------G-------------------------------------------.......................................2011.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................................................CGCT-A--AAGA--TACTC----------------------------------------G---TGCGGC----AC.............................................................................................................................2311.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATACACATCGCT-A--AAGA--T.........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................CACTTCGTGGATACACATCGCT-A--AAGA--TACTC----------------------------------------G---TG.......................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
....................................................................................................................................CACTTCGTGGATACACATCGCT-A--AAGA--..........................................................................................................................................................................................2711.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CGTTAC-AAGTGCGCGCTAAACGG-------------------G-------------------------------------------CC.....................................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CATCGCT-A--AAGA--TACTC----------------------------------------G---TGC......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................................................AGTACGCAAAAGACACTTCGTG.................................................................................................................................................................................................................2211.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
.......................................................................................................................AGTACGCAAAAGACACTTC....................................................................................................................................................................................................................1911.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GCAAAAGACACTTCGTGGATA.............................................................................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CTTCGTGGATACACATCGCT-A--AAGA--..........................................................................................................................................................................................2511.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................T-A--AAGA--TACTC----------------------------------------G---TGCGGC----...............................................................................................................................1811.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CATCGCT-A--AAGA--TACTC----------------------------------------G---TG.......................................................................................................................................2011.0010000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................CTTCGTGGATACACATCGCT-A--AAG.............................................................................................................................................................................................2411.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATACACATCGCT-A--AAGA--TACT......................................................................................................................................................................................2111.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................GCAAAAGACACTTCGTGGATACACA.........................................................................................................................................................................................................2511.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................CGCT-A--AAGA--TACTC----------------------------------------G---TGCGGC----ACG............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................ACATCGCT-A--AAGA--TACTC----------------------------------------G---TGCGGC----AC.............................................................................................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AGA--TACTC----------------------------------------G---TGCGGC----ACGT...........................................................................................................................1911.0010000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................ATACACATCGCT-A--AAGA--TACTC----------------------------------------G---TGCG.....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................CGCAAAAGACACTTCGTGG................................................................................................................................................................................................................1911.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................CGTGGATACACATCGCT-A--AAGA--TACT......................................................................................................................................................................................2611.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
droMoj3
AAC----------------ACGCAGTCGAACAGCTGTTTCT-------CGTT--------------------------------TTTAATAAACAAACCGACGCGCCGACAGTTAGCTCAGTACGCAAAAGACACTTCGTGGATACACATCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................TACGCAAAAGACACTTCGTGGATA.............................................................................................................................................................................................................2411.001100000
droGri2
AGT-----------------------CGAACAGCTGTTTGT-------TGTT--------------------------------TATTATAAACAAACG---GCGGCGTTGTCTGGCTCAGTACGCAAAAGATACTTCGTGGATACACATCGC----TAGAG--ATATT----------------------------------------C---GCGGGC----ACGTTAC-AAGCGCGCGCTAAACGG-------------------GC-CGTT----CGTCAGAACACAG-----ACC-CAA-AACCAAAGCAA----------T-CAGC-AGC----------CAA-CSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................................................................................................................................................................................................................................AAAGCAA----------T-CAGC-AGC----------CAA-C1911.00110

Generated: 10/20/2015 at 10:30 PM