ID:

dsi_29867

Coordinate:

2r:5796805-5796948 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5796612_5796804_+]; CDS [2r_5796612_5796804_+]; CDS [2r_5796949_5797544_+]; exon [2r_5796949_5797544_+]; intron [2r_5796805_5796948_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCATTTGGGTCTCAAACGACTTCGAAATTGCACCCGAAGATACCCAGCTTGTAAGTTACCGTATAATTATTAATTTATTTATTAAAAGCAATCTTGAAATATAAAGTATTATAATTGATATGAGCACTATCGGAGCTCATAATTAACTCCTTATCATAAATTAGTGCGTAATGACTTATTACACTTTTGCTCAGTACAAAACGACTATGGAAGCTCTGCTGCAGACCTCTGAACCCAGTGCAAG ************************************************((((((((.(((((......((((((((..........((((..(((.((.....)).)))..)))).(((((((.((...)).)))))))..............)))))))))))))...))))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M053 female body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo
.......................................................................................................................................................................................................AACGACTATGGAAGCTCTGCTGCA.....................	24	0	1	2.00	2	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACAAAACGACTATGGAAGCTCTGCT........................	25	0	1	2.00	2	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAACGACTATGGAAGATCTGCC........................	22	2	1	1.00	1	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................TATGGAAGCTCTGCTGCAGACCTC...............	24	0	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TGACTATGGAAGCTCTGCTGCAGACCTC...............	28	1	1	1.00	1	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................AAACGACAATGGAGGTTCTGC.........................	21	3	6	0.17	1	0	0	0	0	1	0	0	0
......................................................................................................................TATGAGCACTATCGA...............................................................................................................	15	1	8	0.13	1	0	0	0	0	0	0	1	0
.......................................AAACCCAGCTTGAAAGTT...........................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	0	1	0	0
.....................................................................................................................ATATGAGCACTGTCGAA..............................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................AGGAAACTCTGCTGAAGAC..................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

CGTAAACCCAGAGTTTGCTGAAGCTTTAACGTGGGCTTCTATGGGTCGAACATTCAATGGCATATTAATAATTAAATAAATAATTTTCGTTAGAACTTTATATTTCATAATATTAACTATACTCGTGATAGCCTCGAGTATTAATTGAGGAATAGTATTTAATCACGCATTACTGAATAATGTGAAAACGAGTCATGTTTTGCTGATACCTTCGAGACGACGTCTGGAGACTTGGGTCACGTTC ************************************************((((((((.(((((......((((((((..........((((..(((.((.....)).)))..)))).(((((((.((...)).)))))))..............)))))))))))))...))))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
.............................CGTGGGCTTCTATGGGTCGA...................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0
................................................................................................................................................................................................TCGTGTTTTGCTGATA....................................	16	1	3	0.33	1	0	1	0	0
...................................................................................................................................................................................................TTTTTTGCTGATACCTAC...............................	18	2	8	0.13	1	0	0	1	0
....................................TTCTATTGGTCGAACAC...............................................................................................................................................................................................	17	2	13	0.08	1	0	1	0	0
...........................................................GGATATTAATAATTAA.........................................................................................................................................................................	16	1	15	0.07	1	0	0	0	1

Generated: 04/23/2015 at 11:40 PM