ID:

dsi_29864

 Coordinate:

4:739874-740023 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.4 -13.4 -13.3

Flybase annnotation

exon [4_739818_739873_-]; CDS [4_739818_739873_-]; intron [4_739874_740366_-]

Repeatable elements

NameClassFamilyStrand
Hoyak2DNAhAT-Ac+
DNAREP1_DMRCHelitron-
mature
star
  1. 3l:19199459-19199473 +
  2. dsi_29864  4:739912-739926 -
  3. x:20665746-20665760 +
  4. node_43881:67-81 +
  5. node_15927:580-594 -
  6. node_127646:2548-2562 +

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATCCTTCCAGATCATGATTTCTAGTCCTTTAAAGGAGTCGTATTGCCGAATTAAAGTATTCAATTTAGGGTTGCCGCCCCACTCTCTTTTCTGCTTTCATTTGATGAAGTTCGAGTATCTAAAAGTCGCGGATCTCGACTATAGCATTCTGTCTTGTTGTATTGTTAAATAACCATGTTCAATATTGTTCTTTTTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAGCTGCACCTA
*************************************************************************************.......(((...........((((((((((.((((.........))))))))).....)).))).........)))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M025
embryo
 M023
head
 M024
male body		 O002
Head
 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
....................................................................................CTCTGTTCTGCTTTCATT.................................................................................................................................................... 18 1 1 430.00 430 315 33 18 42 0 11 3 4 0 2 1 1 0 0
.....................................................................................TCTGTTCTGCTTTCATTGG.................................................................................................................................................. 19 2 4 259.75 1039 186 324 330 106 0 2 1 10 34 25 14 7 0 0
....................................................................................CTCTGTTCTGCTTTCATTGG.................................................................................................................................................. 20 2 2 237.50 475 427 11 10 2 0 12 3 3 3 2 1 1 0 0
....................................................................................CTCTGTTCTGCTTTCATTG................................................................................................................................................... 19 2 4 183.75 735 124 329 76 137 0 30 27 3 2 4 0 3 0 0
.....................................................................................TCTGTTCTGCTTTCATTG................................................................................................................................................... 18 2 18 90.17 1623 441 531 378 153 63 13 7 13 10 7 1 6 0 0
......................................................................................CTGTTCTGCTTTCATTGG.................................................................................................................................................. 18 2 10 89.80 898 682 4 6 6 186 3 0 3 3 4 1 0 0 0
...................................................................................CCTCTGTTCTGCTTTCATTG................................................................................................................................................... 20 3 19 56.84 1080 186 475 113 175 62 29 32 3 1 3 0 1 0 0
...................................................................................CCTCTGTTCTGCTTTCATT.................................................................................................................................................... 19 2 6 55.83 335 126 54 12 38 63 12 25 4 0 1 0 0 0 0
...................................................................................CCTCTGTTCTGCTTTCAT..................................................................................................................................................... 18 2 10 44.20 442 252 0 0 0 189 0 0 1 0 0 0 0 0 0
....................................................................................CTCTGTTCTGCTTTCATTGGTT................................................................................................................................................ 22 3 4 40.50 162 122 11 4 6 0 8 3 0 6 2 0 0 0 0
...................................................................................CCTCTGTTCTGCTTTCATTGG.................................................................................................................................................. 21 3 5 19.40 97 61 10 6 2 0 13 0 1 3 0 0 0 1 0
.....................................................................................TCTGTTCTGCTTTCATTGGTT................................................................................................................................................ 21 3 17 17.24 293 124 61 36 18 0 6 2 3 23 7 7 6 0 0
..................................................................................ACCTCTGTTCTGCTTTCAT..................................................................................................................................................... 19 3 20 12.95 259 252 1 0 0 0 2 1 1 0 2 0 0 0 0
..................................................................................ACCTCTGTTCTGCTTTCATT.................................................................................................................................................... 20 3 15 11.33 170 63 41 5 8 0 30 13 1 0 2 1 1 3 2
.....................................................................................TCTGTTCTGCTTTCATT.................................................................................................................................................... 17 1 4 9.50 38 0 0 0 0 0 0 0 29 1 4 2 2 0 0
....................................................................................CTCTGTTCTGCTTTCATTTGT................................................................................................................................................. 21 2 1 4.00 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0
.....................................................................................TCTGTTCTGCTTTCATTGGA................................................................................................................................................. 20 2 2 3.00 6 0 1 0 0 0 0 0 0 1 2 0 2 0 0
.....................................................................................TCTGTTCTGCTTTCATTGGG................................................................................................................................................. 20 3 14 2.21 31 0 23 7 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCTGAGTCCATAGCTGCACCT. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCGTGAAAGGAGTCGTACTGC........................................................................................................................................................................................................... 21 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
....................................................................................................................................................................................................................................TCTGAGTCCATAGCTGCACC.. 20 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................CTCTGTTCTGCTTTCATTGGG................................................................................................................................................. 21 3 4 2.00 8 0 4 1 2 0 1 0 0 0 0 0 0 0 0
....................................................................................CTCTGTTCTGCTCTCATT.................................................................................................................................................... 18 2 16 1.81 29 0 11 3 14 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTCTGCTTTCATTGG.................................................................................................................................................. 15 1 20 1.70 34 0 0 0 0 0 0 0 0 2 23 4 5 0 0
......................................................................................CTGTTCTGCTTTCATT.................................................................................................................................................... 16 1 9 1.22 11 0 0 0 0 0 0 0 7 0 1 1 2 0 0
...................................................................................CCTCTTTTCTGCTTTCATTGG.................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....TTCCAGATCATGATTTCTAGTCCTT............................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................ACCTCTGTTCTGCTTTCATTTG.................................................................................................................................................. 22 3 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCTTTTCTGCTTTCATTG................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TCTCTGTTCTGCTTTCATTG................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TCTCTGTTCTGCTTTCATTGG.................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCTTTTCTGCTTTCAT..................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CTCTGTTCTGCTTTCATTTGG................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AATTCCTATAGTGTCTCCTAAAAA.......................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................CTCTGTTCTGCTTTCATTGGC................................................................................................................................................. 21 3 8 0.75 6 0 2 2 1 0 0 1 0 0 0 0 0 0 0
....................................................................................CTCTGTTCTGCTTTCAT..................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................TCGACTATAACATTCTGTCTTGTTGTA........................................................................................ 27 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................GCGCCCCATTCTCTTTTCTGTT.......................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................ATTCTGTGTTGTTGTATTGTT................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TATCGCAGTCCATAGCTG...... 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................TTCAAAGCAGTCGTATTGC........................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................CTTTTCTGCTTTCATT.................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................CTCTGTTCTGCTTTCA...................................................................................................................................................... 16 1 9 0.44 4 0 0 0 0 0 0 0 1 2 1 0 0 0 0
......................................................................................CTGTTCTGCTTTCATTGGG................................................................................................................................................. 19 3 20 0.35 7 0 0 1 4 0 2 0 0 0 0 0 0 0 0
.....................................................................................TCTGTTCTGCTTTCA...................................................................................................................................................... 15 1 20 0.35 7 0 0 0 0 0 0 0 7 0 0 0 0 0 0
...............TGATTCCTAGTCGTTTAA......................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................TCGACTATAGCATTCTGTATTGTT........................................................................................... 24 1 15 0.33 5 0 0 0 0 0 0 0 0 5 0 0 0 0 0
...................................................................................CCTCTTTTCTGCTTTCATTG................................................................................................................................................... 20 2 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CTGTTCTGCTTTCATTG................................................................................................................................................... 17 2 20 0.30 6 0 0 0 0 0 0 0 6 0 0 0 0 0 0
....................................................................................CTCTTTTCTGCTCTCATTG................................................................................................................................................... 19 2 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCCCTCTGTTCTGCTTTCATT.................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCTCTGTTCTGCTTTCATTT................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CTGTTCTGCTTTCATTGGA................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................TGTTCTGCTTTCATT.................................................................................................................................................... 15 1 20 0.20 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0
...................................................................................................................................................TTCTGTCTTGTTGTA........................................................................................ 15 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CTCTCTTCTGCTTTCATTG................................................................................................................................................... 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCTGTTCTGCTTTCAT..................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................CTCTCTTCTGCTTTCATTGGT................................................................................................................................................. 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GACCTCTTTTCTGCTTTCATT.................................................................................................................................................... 21 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GACTATAGCATTCTGT................................................................................................. 16 0 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................GTTCTGCTTTCATTTGGT................................................................................................................................................ 18 2 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CTGAATCCATAGGTGCA.... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................TAGTGTCTCGTAAAA........................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................CTCTGTTCTGCTTTCATTGC.................................................................................................................................................. 20 3 20 0.10 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................ACTCTGTTCTGCTTTCATTG................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CTGTTCTGCTTTCAT..................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTAGGAAGGTCTAGTACTAAAGATCAGGAAATTTCCTCAGCATAACGGCTTAATTTCATAAGTTAAATCCCAACGGCGGGGTGAGAGAAAAGACGAAAGTAAACTACTTCAAGCTCATAGATTTTCAGCGCCTAGAGCTGATATCGTAAGACAGAACAACATAACAATTTATTGGTACAAGTTATAACAAGAAAAAAATCTTAAGGATATCACAGAGGATTTTTACATAGACTCAGGTATCGACGTGGAT
****************************************************************************************.......(((...........((((((((((.((((.........))))))))).....)).))).........)))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.TAGGGAGGTCTAGTACTAAAG.................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................TCCTCAGCGTAACGGCTTAAT.................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................ACTACTTCAAGCTCATAGATT............................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................TCAGCATAACGGCTTAATTTC................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................CGGGGTGAGAGAAAAGACGAAAGT...................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................GGAGACAAGACGAAAGTAACC.................................................................................................................................................. 21 3 5 0.60 3 0 0 0 0 2 1 0 0
...................................................................................................................................CTAGAGCTGACATCTTGAGAC.................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0
...................................................................................................................................CTAGAGCTGACATCTTGAGACA................................................................................................. 22 3 3 0.33 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................AAAAAAATCTGAAGGA........................................... 16 1 16 0.06 1 0 1 0 0 0 0 0 0
...................................................................................GGAGACAAGACGAAAGTAAC................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 1 0 0
........................................................................................................................ATTTTCGGCGACTAGTGCT............................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
.......................................................................................................CCACTTCAAGGTCATATAT................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................CAAGAAAAATATCTTTAGGC........................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................GGCGGGGTGAGATAAAT............................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0
.............GTACAAAAGAGCAGGAA............................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:739824-740073 - dsi_29864 AATCCTT-CCAGAT--CATGATTTC-----------------------------------------TAGTCCTTTAA-AGG----------------AGTCGTATTGCCGAAT----------------TAAAGTATTCAATTTAGGGTTGCCGC--------CCCACTCTCTTTTCTGCTTTCATTTGATGAAGTTCGAGTATCTAAAAGTCGCGGATCTCGACTATAGCATTCTGTCTTGTTGTATTGTTAAATAACCATGTTCAATATT--------------GTT----CTTTTTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-CACCTA
droSec2 scaffold_30:647385-647635 - dse_1208 AATCCTC-CCAGAA--CATAATTTC-----------------------------------------TAGTTCTTTAA-AGG----------------AGTCGTATTGCCGAAT----------------TAAAGTATTCAATTTAGGGTTGCCGC--------CCCACTCTCTTTTCTGCTTTCATTTGATGAAGTTCGAGTATCTAAAAGTCGCGGACCTCGACTATAGCATTCTGTCTTGTTGTATTGTTAAATAACCATGTTCAATATT--------------GTT---CTTTTTTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-CACCTA
dm3 chr4:945715-945910 - AATCCTC-CCAAAA--GATAATTTC-----------------------------------------TAGTTCTTTAA-A-A----------------AGTTGTATTGACGAAT----------------TCAAGTATTTAATTAAGGCT-----------------------------------------------------------AAGTCGCGAACCCCGACTATAGCATGCTGTCTT---GTATTGTTAAATAATCCTTTTTAATATT--------------TTT---CTTTTCTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------TTG-CTCCTA
droEre2 scaffold_4512:329688-329908 + AAACCTTCCCAGAA--GTTAATTTA-----------------------------------------AAGTTCTTTAA-ACG----------------AGTCCTTTGGCTGAAT----------------TTTAGTATTCAATTTCGGCTTGCTGT--------TGCACATACTTTTCTGCTTCCAAAATATGAGATCCGGGTT---------------------------------CTTTTGTTGTATTGTTAAATAATGTTGTTCAATATT--------------GTT-CTAATTTTTTTAGAATTCCCATAGTGCCTCCTAAAAATGTATCTGAGCCCATAG--------------------------------------------------------------ATG-CTCCTA
droYak3 4:1014030-1014216 - AATG-----------------------------------------------------------------TTTTTTTA-AAG----------------AGTC---------------------------------------------------------------------TTCATTTTACTTTCATAAATTGAGTTCCGGGTATCTAAAAATT----------CCTATAGCGTTCTCTCTT--TGTATTTTTAAATAATCTTGTTTAATATTATATTATAATAATATTT---TTTTTTTTTAGGATTCCTATAATGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-CTCCAA
droEug1 scf7180000408984:281680-281753 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCTTTAGAATTCCTATAGTGTCTCCCAAAAAGGTATCTGATTCCATTGCTACTACTTCTTC--------------------------------------------------TA-TTTCTA
droBia1 scf7180000302490:16676-16917 + GTATTTG-TCTCA-----------------------------TCAATACTTATCGAC------------TCCAAAAAATCG----------------ATACTTATCGACGACCAAAAAATATGCCGCCCTAAA-------ATATAGCTTTGCTGCTTGTATATCTTCATTATCCTTTTGCTCCCTTAAACTGAGTAACGGGTATCTGATAGTCGAGGGACTCGACTATATCGTTCTTTCTGGTT---TTATC-------------------------------------------TCA-----------------------------------------ACTAATC------------------CACGT---TCAAAATATGTTTTGTGATTTGTTTCCAGTCCAGATTGTG-TTT
droTak1 scf7180000413872:177344-177581 - AATGCAG-TTTTAT--TGTG------------------TTTATCAATACCTATCGAAATGTAGAAGAAATTTTTTAA-ATCGGACCATTCGTTAAAAAGTTA---CGGCGGAT----------------CAAAGTTTT----------------T--------CTCCATCTCTTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTT---TTACCATATAATATAAC-------------------------------------------------------------------------TTTATTATTATTATTTTTTTATTTTATTACGTTTTTCAA-------------------------------------AAA
droEle1 scf7180000491238:223330-223417 + TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACTAATTTTAA-ACT--------------GTTTTTTATTGTTTTAGAATTCCTATAGTGTCTCCCAAAAATGTATCCGAGTCTACTG--------------------------------------------------------------CTG-CTCCTA
droRho1 scf7180000778547:328-599 + AAATATT-TCGGAAAAGTAAAAATGCAGTTTTATTGTGTTTATCAATACCTATCGAAATGTAGAAGAAATTTTTCAA-ATCAGACCATTCGTTAAAAAGTTA---TGCGTGAT----------------CAAA--------------GTTTCTAT--------CTCCATCTCCCTCGCACTCCCATTACCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTT---TTA---AATATAATCGTT----A----------------CTT---ATTATTTCTAGAATTACA------TCACATTATAAAGTACCTTGATCAT-----------------------------------------------------------------ATG-TACATA
droFic1 scf7180000454040:524511-524569 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCAGAATACCCATAGTGTCTCCCAAAGTTGTATCTGATTCTACCG--------------------------------------------------------------CTG-CTCCAT
droKik1 scf7180000302413:99641-99699 + TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTAGAATACCCATAGTGCCTCCTAAAAATGTCTCTGACTCTACTT--------------------------------------------------------------CTG-CACTAC
dp5 Unknown_group_8:39972-40028 + C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAGAATTCCCATAGTGTCTCCTAAAAACGCCTCTGACTCCC-----------------------------------------------------------------ATG-TCTCTA
droPer2 scaffold_103:24154-24210 + C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAGAATTCCCATAGTGTCTCCTAAAAACGCCTCTGACCCCC-----------------------------------------------------------------ATG-TCTCTA
droWil2 scf2_1100000004943:716920-716975 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAATTCCCATAGTCTCACCCAAAAATGAATCTGAGCCCCCAATC------------------G-----------------------------------------CTG-TGCAAA
droVir3 scaffold_13052:810670-810749 - TATTATT-AAAGAA--AATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTCAGAATTTCTATAGTGTCTCCGAAAGATGGGTCTGAGTCGTCGTCT------------------------------------------------------------ACG-GCTTAT
droMoj3 scaffold_6498:1399654-1399709 + AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------TAT---ATTTTTTTTAGAATTCCAATAGTCTCCCCGAAAGATGCACCCGAGTC-----------------------------------------------------------------------------
droGri2 scaffold_14822:143230-143321 + TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTGTTATATTATATATTTT-TCCTT--------------CCC---TTCTTTCTTAGAATCCCTATAGTCTCTCCAAAAGATATCTCTGATTCATCTA--------------------------------------------------------------CAG-CT-TTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATCCTT-CCAGAT--CATGATTTC-----------------------------------------TAGTCCTTTAA-AGG----------------AGTCGTATTGCCGAAT----------------TAAAGTATTCAATTTAGGGTTGCCGC--------CCCACTCTCTTTTCTGCTTTCATTTGATGAAGTTCGAGTATCTAAAAGTCGCGGATCTCGACTATAGCATTCTGTCTTGTTGTATTGTTAAATAACCATGTTCAATATT--------------GTT----CTTTTTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-CACCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................TCTGAGTCCATAG--------------------------------------------------------------CTG-CACCT.2112.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................TCTGAGTCCATAG--------------------------------------------------------------CTG-CACC..2012.00211000000000000000
.....TT-CCAGAT--CATGATTTC-----------------------------------------TAGTCCTT......................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
..........................................................................................................................................................................TCTTTTCTGCTTTCATTG....................................................................................................................................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................TCTTTTCTGCTTTCAT......................................................................................................................................................................................................................................1611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................AATTCCTATAGTGTCTCCTAAAAA.........................................................................................2411.00100000000000100000
...........................................................................................................................................................................CTTTTCTGCTTTCATT.....................................................................................................................................................................................................................................1620.50100000000010000000
........................................................................................................................................................................................................................................TTCTGTCTTGTTGTA.........................................................................................................................................................................1560.17100000000001000000
..............................................................................................................................................................................................................................GACTATAGCATTCTGT..................................................................................................................................................................................1680.13100000000001000000
droSec2
AATCCTC-CCAGAA--CATAATTTC-----------------------------------------TAGTTCTTTAA-AGG----------------AGTCGTATTGCCGAAT----------------TAAAGTATTCAATTTAGGGTTGCCGC--------CCCACTCTCTTTTCTGCTTTCATTTGATGAAGTTCGAGTATCTAAAAGTCGCGGACCTCGACTATAGCATTCTGTCTTGTTGTATTGTTAAATAACCATGTTCAATATT--------------GTT---CTTTTTTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-CACCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................GTATCTGAGTCCATAG--------------------------------------------------------------CT........1812.0020011
................................................................................................................................................................................................................................................................................................................................CTAAAAATGTATCTGAGTCCA...........................................................................2111.0010100
...................................................................................................................................................................................................................TCGCGGACCTCGACTATAGCATTCTG...................................................................................................................................................................................2611.0010010
..................................................................................................................................................................................................................................................................................................................TCCTATAGTGTCTCCTAAA...........................................................................................1911.0010010
dm3
AATCCTC-CCAAAA--GATAATTTC-----------------------------------------TAGTTCTTTAA-A-A----------------AGTTGTATTGACGAAT----------------TCAAGTATTTAATTAAGGCT-----------------------------------------------------------AAGTCGCGAACCCCGACTATAGCATGCTGTCTT---GTATTGTTAAATAATCCTTTTTAATATT--------------TTT---CTTTTCTTTAGAATTCCTATAGTGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------TTG-CTCCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................ATGTATCTGAGTCCATAG--------------------------------------------------------------T.........1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CCTATAGTGTCTCCTAAAAATGTATC...................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................AACCCCGACTATAGCATGCTGTCT................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TCCTATAGTGTCTCCTAAAAATGTATC...................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AGTGTCTCCTAAAAATGTATCTGAGTC.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATGTATCTGAGTCCATA.........................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAATGTATCTGAGTCCATAG--------------------------------------------------------------TTG-C.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CCGACTATAGCATGCTGTCTT---............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................GAACCCCGACTATAGCATGC.....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TCTGAGTCCATAG--------------------------------------------------------------TTG-CTAAA.2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAGTGTCTCCTAAAAATGTATC...................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAGTGTCTCCTAAAAATGTATCTGAGT..............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AGCATGCTGTCTT---GTATTG......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ATTCCTATAGTGTCTCCT..............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TATCTGAGTCCATAG--------------------------------------------------------------TTG-C.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------T.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCCTTTTTAATATT--------------TTT---CTTTTCTTTAG.................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------T.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CGACTATAGCATGCTGTCT................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................TTTTAATATT--------------TTT---CTTTTCTTT...................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ATCTGAGTCCATAG--------------------------------------------------------------TTG-CTCCTA2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAATGTATCTGAGTCCATAG--------------------------------------------------------------TTG-CT....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................GAACCCCGACTATAGCATGCTGT..................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GTATCTGAGTCCATAG--------------------------------------------------------------TTG-CTC...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CTGAGTCCATAG--------------------------------------------------------------TTG-CTCCTA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GTATCTGAGTCCATAG--------------------------------------------------------------TTG-C.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TCGCGAACCCCGACTATAGCATG......................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TATAGTGTCTCCTAAAAATGTAT....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GCGAACCCCGACTATAGCATGCTGTC.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AATTCCTATAGTGTCTCCTA.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAGTGTCTCCTAAAAATGTATCTGAGTC.............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ATCTGAGTCCATAG--------------------------------------------------------------TTG-C.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------TTG-C.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................TATAGTGTCTCCTAAAAATGTATCT..................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAACCTTCCCAGAA--GTTAATTTA-----------------------------------------AAGTTCTTTAA-ACG----------------AGTCCTTTGGCTGAAT----------------TTTAGTATTCAATTTCGGCTTGCTGT--------TGCACATACTTTTCTGCTTCCAAAATATGAGATCCGGGTT---------------------------------CTTTTGTTGTATTGTTAAATAATGTTGTTCAATATT--------------GTT-CTAATTTTTTTAGAATTCCCATAGTGCCTCCTAAAAATGTATCTGAGCCCATAG--------------------------------------------------------------ATG-CTCCTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................TTCAATATT--------------GTT-CTAATTTTTTTA..................................................................................................................2411.0011000000
....................................................................................................................................................................................................................................................................................................................................AAATGTATCTGAGCCCATAG--------------------------------------------------------------AT........2211.0010100000
..............................................................................................................................................................................................................................................................................................................................TCCTAAAAATGTATCTGAGCCCATAG--------------------------------------------------------------A.........2711.0011000000
...............................................................................................................................................................................................................................................................................................................................CCTAAAAATGTATCTGAGCCCA...........................................................................2211.0011000000
........................................................................................................................................................................................................................................................................................................................................GTATCTGAGCCCATAG--------------------------------------------------------------ATG-CTC...2211.0010100000
......................................................................................................................................................................................................................................................................................................................................ATGTATCTGAGCCCATAG--------------------------------------------------------------ATG-CTC...2411.0010100000
.......................................................................................................................................................................................................................................................................................................................................TGTATCTGAGCCCATAG--------------------------------------------------------------AT........1911.0010000100
droYak3
AATG-----------------------------------------------------------------TTTTTTTA-AAG----------------AGTC---------------------------------------------------------------------TTCATTTTACTTTCATAAATTGAGTTCCGGGTATCTAAAAATT----------CCTATAGCGTTCTCTCTT--TGTATTTTTAAATAATCTTGTTTAATATTATATTATAATAATATTT---TTTTTTTTTAGGATTCCTATAATGTCTCCTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-CTCCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................CTAAAAATGTATCTGAGTCCATAG--------------------------------------------------------------C.........2511.00100100000000
......................................................................................................................................................................................................................................................................................................................................ATGTATCTGAGTCCATAG--------------------------------------------------------------CTG-......2111.00100100000000
........................................................................................................................................................................................ATAAATTGAGTTCCGGGTAT....................................................................................................................................................................................................................2011.00100010000000
..........................................................................................................................................................................................................................................................................................................................TGTCTCCTAAAAATGTATCTGAGT..............................................................................2411.00101000000000
droEug1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCTTTAGAATTCCTATAGTGTCTCCCAAAAAGGTATCTGATTCCATTGCTACTACTTCTTC--------------------------------------------------TA-TTTCTASizeHit CountTotal NormTotal
No Reads
droBia1
GTATTTG-TCTCA-----------------------------TCAATACTTATCGAC------------TCCAAAAAATCG----------------ATACTTATCGACGACCAAAAAATATGCCGCCCTAAA-------ATATAGCTTTGCTGCTTGTATATCTTCATTATCCTTTTGCTCCCTTAAACTGAGTAACGGGTATCTGATAGTCGAGGGACTCGACTATATCGTTCTTTCTGGTT---TTATC-------------------------------------------TCA-----------------------------------------ACTAATC------------------CACGT---TCAAAATATGTTTTGTGATTTGTTTCCAGTCCAGATTGTG-TTTSizeHit CountTotal NormTotal
No Reads
droTak1
AATGCAG-TTTTAT--TGTG------------------TTTATCAATACCTATCGAAATGTAGAAGAAATTTTTTAA-ATCGGACCATTCGTTAAAAAGTTA---CGGCGGAT----------------CAAAGTTTT----------------T--------CTCCATCTCTTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTT---TTACCATATAATATAAC-------------------------------------------------------------------------TTTATTATTATTATTTTTTTATTTTATTACGTTTTTCAA-------------------------------------AAASizeHit CountTotal NormTotal
No Reads
droEle1
TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACTAATTTTAA-ACT--------------GTTTTTTATTGTTTTAGAATTCCTATAGTGTCTCCCAAAAATGTATCCGAGTCTACTG--------------------------------------------------------------CTG-CTCCTASizeHit CountTotal NormTotal
No Reads
droRho1
AAATATT-TCGGAAAAGTAAAAATGCAGTTTTATTGTGTTTATCAATACCTATCGAAATGTAGAAGAAATTTTTCAA-ATCAGACCATTCGTTAAAAAGTTA---TGCGTGAT----------------CAAA--------------GTTTCTAT--------CTCCATCTCCCTCGCACTCCCATTACCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTT---TTA---AATATAATCGTT----A----------------CTT---ATTATTTCTAGAATTACA------TCACATTATAAAGTACCTTGATCAT-----------------------------------------------------------------ATG-TACATASizeHit CountTotal NormTotal
No Reads
droFic1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCAGAATACCCATAGTGTCTCCCAAAGTTGTATCTGATTCTACCG--------------------------------------------------------------CTG-CTCCATSizeHit CountTotal NormTotal
No Reads
droKik1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTAGAATACCCATAGTGCCTCCTAAAAATGTCTCTGACTCTACTT--------------------------------------------------------------CTG-CACTACSizeHit CountTotal NormTotal
No Reads
dp5
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAGAATTCCCATAGTGTCTCCTAAAAACGCCTCTGACTCCC-----------------------------------------------------------------ATG-TCTCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................TCCTAAAAACGCCTCTGACTC.............................................................................2111.0010100000000
droPer2
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAGAATTCCCATAGTGTCTCCTAAAAACGCCTCTGACCCCC-----------------------------------------------------------------ATG-TCTCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................CTCCTAAAAACGCCTCTGAC...............................................................................2012.002200000
..................................................................................................................................................................................................................................................................................................................................AAAAACGCCTCTGACCCCC-----------------------------------------------------------------ATG-TCT...2511.001100000
...........................................................................................................................................................................................................................................................................................................................GTCTCCTAAAAACGCCTCTGACCCC............................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................AATTCCCATAGTGTCTCCT..............................................................................................1911.001001000
.....................................................................................................................................................................................................................................................................................................................................AACGCCTCTGACCCCC-----------------------------------------------------------------ATG-G.....2011.001100000
.....................................................................................................................................................................................................................................................................................................................CATAGTGTCTCCTAAAAACGCCT....................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................AACGCCTCTGACCCCC-----------------------------------------------------------------ATG-T.....2011.001100000
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAATTCCCATAGTCTCACCCAAAAATGAATCTGAGCCCCCAATC------------------G-----------------------------------------CTG-TGCAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................CCAAAAATGAATCTGAGC..............................................................................1813.00330000
................................................................................................................................................................................................................................................................................................................................CCAAAAATGAATCTGAGCCC............................................................................2011.00110000
...............................................................................................................................................................................................................................................................................................................................CCCAAAAATGAATCTGAGCCC............................................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................................................ATCTGAGCCCCCAATC------------------G-----------------------------------------CT........1911.00100010
..................................................................................................................................................................................................................................................................................................................................AAAAATGAATCTGAGCCCCC..........................................................................2011.00110000
..............................................................................................................................................................................................................................................................................................................................ACCCAAAAATGAATCTGAGCCCCCAAT.......................................................................2711.00110000
......................................................................................................................................................................................................................................................................................................................................ATGAATCTGAGCCCCCAATC------------------G-----------------------------------------CT........2311.00100010
......................................................................................................................................................................................................................................................................................................................ATAGTCTCACCCAAAAATGAATCTGA................................................................................2611.00100010
......................................................................................................................................................................................................................................................................................................................................ATGAATCTGAGCCCCCAAT.......................................................................1911.00101000
.................................................................................................................................................................................................................................................................................................................................CAAAAATGAATCTGAGCC.............................................................................1811.00110000
..........................................................................................................................................................................................................................................................................................................................................ATCTGAGCCCCCAATC------------------G-----------------------------------------CTG-......2011.00110000
..................................................................................................................................................................................................................................................................................................................................AAAAATGAATCTGAGCCC............................................................................1811.00100010
........................................................................................................................................................................................................................................................................................................................AGTCTCACCCAAAAATGAATCTGAGC..............................................................................2611.00100010
droVir3
TATTATT-AAAGAA--AATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTCAGAATTTCTATAGTGTCTCCGAAAGATGGGTCTGAGTCGTCGTCT------------------------------------------------------------ACG-GCTTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................GATGGGTCTGAGTCGTCG.........................................................................1814.004000000000040000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAAAGATGGGTCTGAGTC.............................................................................1812.002000001000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTCCGAAAGATGGGTCTGAGTC.............................................................................2212.002000100000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................TTCTATAGTGTCTCCGAAA...........................................................................................1912.002000000000000100000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTCCGAAAGATGGGTCTGA................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TCTCCGAAAGATGGGTCTGAG...............................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GTCTCCGAAAGATGGGTCTGA................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CTATAGTGTCTCCGAAAGATGGGT....................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAGTGTCTCCGAAAGATG.......................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................ATGGGTCTGAGTCGTCGTCT------------------------------------------------------------ACG-GC....2511.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................GTCTCCGAAAGATGGGTCT..................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GTCTGAGTCGTCGTCT------------------------------------------------------------ACG-......1911.001000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTCTATAGTGTCTCCGAAAGATGGGT....................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GTGTCTCCGAAAGATGGGT....................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................TCTGAGTCGTCGTCT------------------------------------------------------------ACG-G.....1911.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAGTGTCTCCGAAAGATGGGTCT..................................................................................2311.001000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................GTCTCCGAAAGATGGGTCTG.................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GTCTCCGAAAGATGGGTCTGAGTC.............................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------TAT---ATTTTTTTTAGAATTCCAATAGTCTCCCCGAAAGATGCACCCGAGTC-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTGTTATATTATATATTTT-TCCTT--------------CCC---TTCTTTCTTAGAATCCCTATAGTCTCTCCAAAAGATATCTCTGATTCATCTA--------------------------------------------------------------CAG-CT-TTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................AAAAGATATCTCTGATTCATCTA--------------------------------------------------------------CA........2520.50110

Generated: 05/19/2015 at 04:41 AM