ID:

dsi_29813

 Coordinate:

3r:21829438-21829587 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.9 -11.9 -11.8 -11.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CGTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

GCGCGCGGGCGGACGACGAGAAAAAATTGGAAACGCGGATGAAAACAACGGTTGATTTTCACCCAACGCTCGTGATTTTCGACCGCTTTTGAGTGTGGAAGCGAAAAAAACCGCCTGTTTTTTAACTGCATGCGTGCGTGCTAGTGTGTGTGTGTGTGCGCGCGTGTACGTGTTCGTAATTTAGACGCGCTGCTCGCCGCGATTTCTGTTGTTCTGTGTGGCTCCTGTAACTACAGTAAATACTCGTGCG
****************************************************((.............((..((..((((((.((((........))))...))))))..)).))............))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 M053
female body
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 O001
Testis
 GSM343915
embryo
...............................AACGCGGATGAAAACAAC......................................................................................................................................................................................................... 18 0 1 21.00 21 8 10 1 2 0 0 0 0 0 0 0 0 0
.........................ATTGGAAACGCGGATGAA............................................................................................................................................................................................................... 18 0 1 8.00 8 5 2 0 1 0 0 0 0 0 0 0 0 0
.................................CGCGGATGAAAACAACGGTTGATTTT............................................................................................................................................................................................... 26 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAACGCGGATGAAAACAAC......................................................................................................................................................................................................... 19 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0 0 0
.........................ATTGGAAACGCGGATGAAAACAACG........................................................................................................................................................................................................ 25 0 1 3.00 3 0 0 1 0 0 0 0 0 0 2 0 0 0
..............................AAACGCGGATGAAAACAA.......................................................................................................................................................................................................... 18 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0 0 0 0
.................................CGCGGATGAAAACAACGGT...................................................................................................................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...CGCGGGCGGACGACGAGA..................................................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................GCGGATGAAAACAACGGT...................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................AAATTGGAAACGCGGATGAA............................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATTGGAAACGCGGATGAAAACAA.......................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGCGGATGAAAACAACGGTTGA................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GATTTCTGTTGTTCTGTGTGGC............................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..GCGCGGGCGGACGACGAGAAA................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.................................CGCGGATGAAAACAACGG....................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................TGATTTTCACCCAACGCTCGTGATT............................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........GACGACGAGAAAAAATTG............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................AAACGCGGATGAAAACAACGGTT..................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..GCGCGGGCGGACGACGAGAAAAAATT.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................ACGCGGATGAAAACAACGG....................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGGAAACGCGGATGAA............................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................ATTGGAAACGCGGATGAAAA............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGCGGACGAAAACAACGGTTGA................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGGAAACATGGATGAAAACAACG........................................................................................................................................................................................................ 23 3 2 1.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..................AGAAAAAATTGGAAACGC...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTTCTGTTGTTCTGTGTGGCT........................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CCGCCTGTTTTTTAACTG.......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATTGGAAACGCGGATGAG............................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................AAACGCGGATGAAAACAACGGT...................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................GTTCTGTGTGGCTCCTGG...................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........GACGACGAGAAAAAATTGGAAACGCGGA................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................GCGGATGAAAACAACGGTTGATTTT............................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CGCGGGCGGACGACGAAA..................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................GCGGATGAAAACAACGGTTGAT.................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................AAAAAATTGGAAACGCG..................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................ATTGGAAACGCGGATGAAAACA........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................CGTGATTTTCGACCGCTTTTGA.............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................TGGAAACGCGGATGAAAACAACGGTTGA................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................TGGAAACGCGGAAGAA............................................................................................................................................................................................................... 16 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...............ACGAGAAAAAATTGGAAACGCGGA................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............ACGAGAAAAAATTGGAAACGCGGATG................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGCGGATGAAAACAACGGTTGATTT................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTTCTGTGTGGCTCCTGTAAC................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...CGCGGGCGGACGACGAGAAA................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................AATTGGAAACGCGGATGAA............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............GACGAGAAAAAATTGGAA.......................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
GCGCGCGGGCGGACGACGAGAAAAAAT............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................GCTCGTGATTTTCGACCG..................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................ACGCGGATGAAAACAACGGTTG.................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................AACGCGGATGAAAACAACG........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................TTTCTGTTGTTCTGTGTTGCTCCT........................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AACAACGGTTGATTTTCACCCAAC....................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................AGTGGAAACGCGGATGAAAACAACG........................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................AAAATTGGAAACGCGGATGAA............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACCGCCTTTTTTTTAACTG.......................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................ATGAAGACAACGGTTGAT.................................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGCTCGTGATTTTCGACC...................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................GATTTTCGACCGCTTTTGAGT............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........CGGACGACGAGAAAAAATTGGAAACGC...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................GGAAACATGGATGAAAACAACGCT...................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...CGCGGGCGGACGACGAGG..................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................GCGGATGAAAACAACGGC...................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGGAAACATGGATGAAAACAAC......................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................AACATGGATGAAAACAACGCT...................................................................................................................................................................................................... 21 3 6 0.33 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.............................................................................................TGTGGAAGCGAAAAAACCGCC........................................................................................................................................ 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................CAACGGTTGACTTTGACC........................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....AAGGTGGACGACGAGAAAAAA................................................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................CGAGGTACAATTGGAAACGC...................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................ACTGGAGACTCGGATGAAAA............................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........GCGTAAGACGAGAAACAATT.............................................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCGAAAAAGACCGCCCG..................................................................................................................................... 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTCCTGTTACTACTGTAA........... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................GGTTCTGTGTGTCTCCT........................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CGCGCGCCCGCCTGCTGCTCTTTTTTAACCTTTGCGCCTACTTTTGTTGCCAACTAAAAGTGGGTTGCGAGCACTAAAAGCTGGCGAAAACTCACACCTTCGCTTTTTTTGGCGGACAAAAAATTGACGTACGCACGCACGATCACACACACACACACGCGCGCACATGCACAAGCATTAAATCTGCGCGACGAGCGGCGCTAAAGACAACAAGACACACCGAGGACATTGATGTCATTTATGAGCACGC
**************************************************************************************************************************((.............((..((..((((((.((((........))))...))))))..)).))............))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................................................ACCAAGACACACAGAGGAAA...................... 20 3 16 1.81 29 0 29 0 0 0
.............................................................GGGTTGCGAGCACTAAAAGCT........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
...............................TTGTACCTACTTTTGTTGCGAA..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
...........CTGCTGCTCTTTTTTAACCTT.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................GCGGCGCTAAAGACAACAAGA................................... 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................CATGCACAAGCATTAAATCTG................................................................ 21 0 1 1.00 1 0 0 1 0 0
...............................................................................................................................................................................................................CACCAAGACACACAGAGGAAA...................... 21 3 6 0.17 1 0 1 0 0 0
..................................................................................................................................................................................................................CAAGACACACAGAGGAAAGT.................... 20 3 15 0.13 2 0 2 0 0 0
.........................................................................CTAAAAGCTGGCGAG.................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 1 0
...............................................................................................................................................................................................................AACCAAGACACACAGAGGA........................ 19 3 20 0.10 2 0 2 0 0 0
...............................................................................................................................................................................................................................GGCCATGGATGTCATT........... 16 2 10 0.10 1 0 0 0 1 0
..................................................................................................................................................................................................................CAAGACACACAGAGGAAA...................... 18 2 15 0.07 1 0 1 0 0 0
......................................................................................................................AAAAATTGAGCTACGCA................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1
.................................................................................................................................................................................................................CCAAGACACACAGAGGAAA...................... 19 3 20 0.05 1 0 1 0 0 0
.....................TTTTTAACCCTTGCG...................................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0
....................................................................GCGCACTAAAGGCTGG...................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21829388-21829637 + dsi_29813 GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGT------------GGAAGCGAAAAAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----TAGTGTG--TGT--G----TGTGTGCGCGCG--TGTAC--GTGTTCGT--AATTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTCTGTGT----------------GGCTCCTGT--------------------------------------AACTACAGTAAATACTCGTGCG------------------
droSec2 scaffold_13:1144759-1145007 + GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGT------------GGAAGCGAAAAAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----TAGTGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTCGT--AATTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTCTGTG-----------------GGCTCCTGTGT------------------------------------AACTACAGTAAATACTCGTGCG------------------
dm3 chr3R:22362092-22362338 + GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGT----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGT------------GGAAGCGAA-AAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGA-----------GTGCGTGC----GAGTGTG--TGT--------GTGTGCGTGCG--TGTAC--GTGTTCGT--AATTTAGACGTGCTGCTCGCTGCGATTTTCGT--TGTTCTGTGT----------------GGCCCCTGT--------------------------------------AACTACAGTAAATACTCGTGCA------------------
droEre2 scaffold_4820:5688736-5688980 - GCGC-GCGGGTG----GACGAC------GAGAA-A-----AAATTGA----------------AGACGCGGATGAAAACAACGGTGGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AGAAGAGAAACAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------CTGCGTGC----GGCTGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTCGT--AGTTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTTTGTGT----------------GGCCCCTGT--------------------------------------A---ACAGTAAATACTCGTGCG------------------
droYak3 3R:24132057-24132304 - GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAGTTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AGAAGAGAAACAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----GGGTGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTTGT--AGTTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTTTGTGC----------------GGCCCCTGT--------------------------------------AACTACAGTAAATACTCGTGCG------------------
droEug1 scf7180000409682:226250-226486 - GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AG-----AAAAAACCCGCCTGATTTT---------------------------------------------------TAACTGCATG-------------TGCGTGC----AAGTGTG--TGTGTG----ACGGTGTGCGCG--TGTAC--GTGTTCGT--A---TAGACGCGCT-----TCTCCATTTCTGT--TGTTTAGTGT----------------GGCCCCTGT--------------------------------------AACTACAGTAGATACCCGTGTA------------------
droBia1 scf7180000302113:2602625-2602852 + GCGC-G---GCC----GAGG---------AAAA-ACGGAAAAATTGG----------------AAACGCGGATGAAAGCAACGGTG-GTT--TTCGCCCGATGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AG---AGA-AAAACCCGCCTGTTTC--------------------------------------------------------------A-----------GTGCGTGC----GAGTGTGTGTGT--------GTGCGCGCGCG--TGTAC--GTGTTCGT--TTTCCAGACGCGCC-----CCGCGATTTCTGT--GCTGCCGAGT----------------GGCCCCTGT--------------------------------------AACTACAGTAAATACTCGCGCG------------------
droTak1 scf7180000415286:372337-372570 + GTTGCGCGGACG----GACG---------AGAA-------AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCGCCCGACGCTCGTGATT----T----TCGACCGC-TTTTGAAAGTGA------------AG---AAAAAAAACCCGCCTGTTTTT------G--------------------------------------------TGGCTGCATG-------------TGCGTGC----GAG--------T--------GTGTGCGTGCG--TGTAC--GTGTTCGT--TTTGTAGACGCGCT-----TCGCGATTTCTGTGTTGTTTTGTGT----------------GGCCCCCGT--------------------------------------AACTACAGTAAATACTCGCGTG------------------
droEle1 scf7180000491280:388015-388264 + GCGT-GCGGGCG----GACGA---AGTCGAGA--------AAATTGG-ACGAAAG-CACTAGAAAACACGGATGAAAACAACGGCGCATT--------CG--GCTCGTGATT---------TCGACCGC-TTTTGA--GTGA------------------G--AAAACCCGCCTGTTTTT------C--------------------------------------------TAACTGCATTTTA--AAGCGGAGTGCGTGC----G--TGTG--TGT--------GTCTGTGCGCG--TATAC--GTGTTCGATTCGTTTGGACGCGCT-----TCGCCGTTTCTGT--TGTTCTGTGT----------------GGCTCCTGT--------------------------------------A-CTACAGTAATTACTCGTGTG------------------
droRho1 scf7180000778271:31259-31514 + GCGC-GCGGGCG----GACGACGAAATCGTGAG-A-----AAATTGA-ACGAAAGCCACTGGAAAACACGGATGAAAACAACGGCGCATT--------CG--GCTCGTGATT---------TCGACCGC-TTTTGA--GTGA------------------GA-AAAACCCGCCTGTTTTTTT----C--------------------------------------------TAACTGCATTTTA--AAGC---GTGCGTGT----G--CGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTCGATTCGTTTGGACGCGCT-----TTGCAATTTCTGT--TATTCTGTGT----------------GGTTCCTGT--------------------------------------A-CTACAGTAAATACTCGCGTA------------------
droFic1 scf7180000454055:2255712-2255948 + GCGC-GCG--CGGACCGCGGAC------GAAAG-A-----AAATCGGAAC------CTC-GGAAAAGACGGATGAAAACAACGGCG-CTTCGTCCGCTCGA--CTCGTGATT---TT----TCTACCGC-TTTTGA--GTGA------------------G---AAACCCGCCTGTTTTT---------------------------------------------------TAACTGCATGT-A--AAGCGGACTGCGTGT----G--CGTG--TGT--------TTGTGCGCGCG--TGTAC--GTGTACGT--T---T---------------CGCG-TTTCTGT--TGTTTTGTGT----------------GGCCCCTGT--------------------------------------AAATACAGTAAATACTCCAGTA------------------
droKik1 scf7180000302253:336834-337037 - GTGTCGCGGGCG----GATGA---------AAAAA-----AAACTG-----------------------------AAACAACGGCG--TT--TGCGGCC-ACGCTCGTGTTT----A----TC--CTGT-TTTAGA--G--A------------ATA-TTAAAACAAATCGCCTGTTTTTCCCGTT-TT------------------------CG--------TGAATTAAAAACGG----------------CTGCGTGG----GCGTGTG--TGT--------GTGT-CGTTCG--TGTCC--GTGTG------------------------------------A--TATATTCCGG----------------GGCTCCTTTAGCCT----------------------------------TATACAGTAAATACTCG----------------------
droAna3 scaffold_13340:16970713-16970922 - C-----------------------------------------------------------------------------------------------------GCTCGTGATTGATTGTCCGTCGCCGCCTTTTTGG--G--AACGGTGCAGTTAAG----------A-GTCCCCGTTTTTTCCA-----------------------------------------------GTACTGCATGCCA----GCGGTTTGCGTGC----G--TCTC--TGT--------GTGTGTGTGTG--TGTAC--GTGTGAG----GCCTGGACGCGCG-----CCGTGATTGTTGT--TTTTCTGCGC----------------CGCCC--GTAG------------------------------------CCGTACAGTAAATATTCGGCTTACAGCCAGCGTAAGTGGC
droBip1 scf7180000396424:479360-479519 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTTTTTCCA-----------------------------------------------GTACTGCATGCCAGCCAGCGTACGGCG------------------T--------GCGTGTGTGTG--TGTAC--G--TACGA--GGCCTGGACGCGGG-----CCGTGATTGTTGT--TTTTCTGCGC------CGTTTTTTC-CG--CCCGTAGCCGTACAGTGAATACTACTGGTTAGCTG----------------------------------CCAGCGTAAGTGGC
dp5 4_group3:3866211-3866419 + ACG-----------------GT------GAAAAAA-----AAACCAA-ACG---------AGAAAACGAGAAGAGAAACAACG------C--CCCACCCAAGGCACGAAAGT----T----T---------TTCAA--GTGT------------------------ATCCTTCTGCTGCTGT----ATT------------------------GG--------TG------TATCTGTGTGC-----------GTGCGTGT----GTGTGTG--TGT--G----TGT----GTGTGTGTGTGTGTGCGTGCGT--GA--------------------GTGTTTTTGT--TGCC--GCACCCCGAATATCCTGTGTG---CCTGT--------------------------------------GCCTAAATTAAA----------------------------
droWil2 scf2_1100000004590:2778871-2778936 - GCCA-ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------------------------------------------------TATATGTATGT-----------GTATGTGT----ATGTATG--TGT--G----TGCGTGTGTGTG--TGTGT--GTG----------------------------------------------------------------------------------------------------------------------------------CATGTA------------------
droVir3 scaffold_12963:18839848-18839972 - CAGC-GGCAGCA----AC-------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCG---------ACGCATGCTAAATTTAAAGGCGTGCGAAACAACT--------T--GTGCGTGC-----------GTGCGTGC----TTATGTG--TGT--G----TGTGTG--TGTG--TGTGTGTGTGTGCAT--AA----ATTATGCTGCTTAGC---------------------------------------------------------------------------------------------------------GCG------------------
droMoj3 scaffold_6540:16891625-16891778 - AAGT-AAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTGTG---------------------------------------------------TGAGTGTGTAC-----------GCGCGTAC----GATAGTG--TGC--------GCGCCTGTGGA--TGTGT--GGGCTTGC--ATGCT-AACGAGT---------------------TGTTTTTTGC----------------G-CCTCTGT------ACAGTTAATATTCATATTTTGCTGTTAACCGCA-CTGCACTTGAAGCAAATGTA------------------
droGri2 scaffold_14853:2136708-2136856 + GACT-GCC-----------------------------------------------------------------------------------------------C--------------------------TTGTGG--G--TCCTGGAAAT-------------TGAAAAGCATGCTTATTC-----------------------ACGGTGTGTGTG--------------CGAGTGTGTGT-----------GTGTGTGCGTGTGTGTGTG--TGT--GCGTGTGTGTG--TGTG--TGTGTGTGTGTGCGT--AA-----------------------------------------------------------GCGATTGC--------------------------------------GTGTGCAGGAAA-ATTAGTTTG------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGT------------GGAAGCGAAAAAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----TAGTGTG--TGT--G----TGTGTGCGCGCG--TGTAC--GTGTTCGT--AATTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTCTGTGT----------------GGCTCCTGT--------------------------------------AACTACAGTAAATACTCGTGCG------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................AACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................18121.0021821000000001000000
..........................................ATTGG----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................1818.00851200000000000000
..................................................................CGCGGATGAAAACAACGGTTGATT--TT................................................................................................................................................................................................................................................................................................................................................................................2617.00770000000000000000
...............................................................AAACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................1914.00421100000000000000
..........................................ATTGG----------------AAACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................2513.00300000002001000000
...............................................................AAACGCGGATGAAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................1813.00311100000000000000
..................................................................CGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................1913.00330000000000000000
...C-GCGGGCG----GACGAC------GAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00210000000000100000
...................................................................GCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................1812.00210001000000000000
........................................AAATTGG----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
..........................................ATTGG----------------AAACGCGGATGAAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................2312.00220000000000000000
..................................................................CGCGGATGAAAACAACGGTTGA......................................................................................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................GATTTCTGT--TGTTCTGTGT----------------GGC....................................................................................2212.00220000000000000000
..GC-GCGGGCG----GACGAC------GAGAA-A-----......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000020000
..................................................................CGCGGATGAAAACAACGG..........................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.....................................................................................TGATT--TTCACCCAACGCTCGTGATT----..........................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
................GACGAC------GAGAA-A-----AAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...............................................................AAACGCGGATGAAAACAACGGTT........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
..GC-GCGGGCG----GACGAC------GAGAA-A-----AAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
.................................................................ACGCGGATGAAAACAACGG..........................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
............................................TGG----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..........................................ATTGG----------------AAACGCGGATGAAAA................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.............................AGAA-A-----AAATTGG----------------AAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................ATTTCTGT--TGTTCTGTGT----------------GGCT...................................................................................2211.00100100000000000000
........................................................................................................................................................................CCGCCTGTTTTT---------------------------------------------------TAACTG.................................................................................................................................................................................................................................1811.00110000000000000000
..........................................ATTGG----------------AAACGCGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................GTTCTGTGT----------------GGCTCCTGG--------------------------------------........................................1811.00101000000000000000
................GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
...................................................................GCGGATGAAAACAACGGTTGATT--TT................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
...................................................................GCGGATGAAAACAACGGTTGAT.....................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............................AA-A-----AAATTGG----------------AAACGCG........................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..........................................ATTGG----------------AAACGCGGATGAAAACA..............................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.........................................................................................................CGTGATT----T----TCGACCGC-TTTTGA--....................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
............................................TGG----------------AAACGCGGATGAAAACAACGGTTGA......................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
....................AC------GAGAA-A-----AAATTGG----------------AAACGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
....................AC------GAGAA-A-----AAATTGG----------------AAACGCGGATG....................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
..................................................................CGCGGATGAAAACAACGGTTGATT--T.................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TGTTCTGTGT----------------GGCTCCTGT--------------------------------------AAC.....................................2211.00110000000000000000
...C-GCGGGCG----GACGAC------GAGAA-A-----......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................AATTGG----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
...................GAC------GAGAA-A-----AAATTGG----------------AA.............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
......................................................................................................GCTCGTGATT----T----TCGACCG..............................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.................................................................ACGCGGATGAAAACAACGGTTG.......................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
................................................................AACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
............................................................................AACAACGGTTGATT--TTCACCCAAC........................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..................................A-----AAATTGG----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................................................CGCTCGTGATT----T----TCGACC...............................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
............................................................................................................GATT----T----TCGACCGC-TTTTGA--GT..................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..........CG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
...C-GCGGGCG----GACGAC------GAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100100000000000000
...................................................................GCGGATGAAAACAACGGC.........................................................................................................................................................................................................................................................................................................................................................................................1820.50110000000000000000
droSec2
GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGT------------GGAAGCGAAAAAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----TAGTGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTCGT--AATTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTCTGTG-----------------GGCTCCTGTGT------------------------------------AACTACAGTAAATACTCGTGCG------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................AGAA-A-----AAATTGG----------------AAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020011
..........................................ATTGG----------------AAACGCGGATGAAAA................................................................................................................................................................................................................................................................................................................................................................................................2012.0021100
...............................................................................................................................................................................................................................................................................G--TGT--------GTGTGCGCGCG--TGTAC--GTGTT........................................................................................................................................................2512.0020020
..........................................ATTGG----------------AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
..........................................ATTGG----------------AAACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
................................................................AACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................GACGAC------GAGAA-A-----AAATTGG----------------AAACG..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
..........................................ATTGG----------------AAACGCGGATGAAAACAACGGTT........................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
...........................................................................................................................GACCGC-TTTTGA--GTGT------------GGA.................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................CGCGGATGAAAACAACGG..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.................................................................ACGCGGATGAAAACAACGGTTGATT--..................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
..........................................ATTGG----------------AAACGCGGATGAAAAC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................................................................................................................................................................................................................GT--------GTGTGCGCGCG--TGTAC--GTG..........................................................................................................................................................2111.0010100
.............................................................................................................................................................................................................................................................................................................................TTTAGACGCGCTGCTCGCCGC............................................................................................................................2111.0010010
..............................................G----------------AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
............................................TGG----------------AAACGCGGATGAAAACAACGGTTGA......................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
................................................................................................CCCAACGCTCGTGATT----T----TCGACCGC-T...........................................................................................................................................................................................................................................................................................................................................2611.0010010
.........................................AATTGG----------------AAACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
......................................................................GATGAAAACAACGGTTGATT--TTC...............................................................................................................................................................................................................................................................................................................................................................................2311.0010100
......................................................................................................GCTCGTGATT----T----TCGACCGC-TTTTGA--G...................................................................................................................................................................................................................................................................................................................................2611.0010001
.................ACGAC------GAGAA-A-----AAATTGG----------------AAACGCG........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..................................................................CGCGGATGAAAACAACGGTTGATT--TT................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
......................................................................................................................................................................................................................................................................................................................CGT--AATTTAGACGCGCTGCTCGCCGC............................................................................................................................2611.0010010
............................................................................................................................................................................................................................................................................................................................ATTTAGACGCGCTGCTCGCCG.............................................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................GTTCTGTG-----------------GGCTCCTGTGT------------------------------------AACTA...................................2411.0010010
..................................................................CGCGGATGAAAACAACGGTTGA......................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.........................................................................................................................................................................................................................................................................................................................................................GT--TGTTCTGTG-----------------GGCTCCTGTGT------------------------------------AACT....................................2611.0010100
..................................................................................................................................................................................TT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----TAGT.................................................................................................................................................................................................2511.0010010
...C-GCGGGCG----GACGAC------GAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................ATGAAAACAACGGTTGATT--TTCA..............................................................................................................................................................................................................................................................................................................................................................................2311.0010001
...............................................................AAACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...................................................................GCGGATGAAAACAACGGTTGATT--..................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.........................................................................GAAAACAACGGTTGATT--TT................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...................................................................................................................................................................................................................................................................GC----TAGTGTG--TGT--------GTGTGCGCGCG--T...................................................................................................................................................................2411.0010010
...................................................................................................................................TTTGA--GTGT------------GGAAGCGAAAA.........................................................................................................................................................................................................................................................................................................2011.0010001
..................................................................CGCGGATGAAAACAACGGTTGATT--T.................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..GC-GCGGGCG----GACGAC------GAGAA-A-----AAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
....................................................................................................................................................................................................................................................................................................................................................TTTCTGT--TGTTCTGTG-----------------GGC....................................................................................1911.0010010
.............................................................................................................................................................................................................................................................................................................................TTTAGACGCGCTGCTCGCCGCGA..........................................................................................................................2311.0010010
...........................................................................................................................................TGT------------GGAAGCGAAAAAAACCG...................................................................................................................................................................................................................................................................................................2011.0010001
...........................................................................................................................................................................................................................................................................GTGTG--TGT--------GTGTGCGCGCG--....................................................................................................................................................................19150.1320020
dm3
GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGT----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGT------------GGAAGCGAA-AAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGA-----------GTGCGTGC----GAGTGTG--TGT--------GTGTGCGTGCG--TGTAC--GTGTTCGT--AATTTAGACGTGCTGCTCGCTGCGATTTTCGT--TGTTCTGTGT----------------GGCCCCTGT--------------------------------------AACTACAGTAAATACTCGTGCA------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................ATTGT----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................18138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000050000010000000200000000010000000000101000012100003003201000000000010200000200100300000000010000000000000000000011000
..GC-GCGGGCG----GACGAC------GAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................18135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000000007000100100000000000000021000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000100100100000000000000000000000000100000100000100100000200010301100000000010121010
................GACGAC------GAGAA-A-----AAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................18124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000004000000000000000000000000000000000000000000000000000000000006000000000000000000000000001000000000000000000000001000000000000000000000000000100000000000000000002101000000000000100200000000201000000000000000000000000000000000000
..........................................ATTGT----------------AAACGCGGATGAAAAC...............................................................................................................................................................................................................................................................................................................................................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112000000211001000000100000000000000
..........................................ATTGT----------------AAACGCGGATGAAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100100000000000000000000000000000000000000000000000000000000100001000000100000000010000000001000000000000000
.......GGGCG----GACGAC------GAGAA-A-----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000011000
..........................................ATTGT----------------AAACGCGGATGAAA.................................................................................................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000200000000100100000000000000000100000000000000000
...................................................................................................................................................................................................................................................................................................................................CGTGCTGCTCGCTGCGAT.........................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
..................................................................CGCGGATGAAAACAACGGTTGAT.....................................................................................................................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001100000000000000000100
.........GCG----GACGAC------GAGAA-A-----AAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000001000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000
...............................................................AAACGCGGATGAAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000001000000000000000000000000000000000000
................GACGAC------GAGAA-A-----AAATTGT----------------AAACG..........................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000
.CGC-GCGGGCG----GACGAC------GAGAA-A-----AAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000001000
................GACGAC------GAGAA-A-----AAATTGT----------------AAACGCG........................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AAACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000
................................................................AACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000001000000000000000100000000000000000000000000
GCGC-GCGGGCG----GACGAC------GAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000200000000000000
..........................................ATTGT----------------AAACGCGGATGAAAA................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000001100000000000000000000
GCGC-GCGGGCG----GACGAC------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000
..GC-GCGGGCG----GACGAC------GAGAA-A-----AAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000
.........GCG----GACGAC------GAGAA-A-----AAA...................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATTGT----------------AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000101000000000000000000000000
.......................................................................ATGAAAACAACGGTTGATT--..................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000001000000000000000000000000
..........................................ATTGT----------------AAACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000
...............................................................AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........CG----GACGAC------GAGAA-A-----AAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AAATTGT----------------AAACGCGGATG....................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CGCGGATGAAAACAACGG..........................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GACCGC-TTTTGA--GTGT------------GGAAGCGT............................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AACGCTCGTGATT----T----TCGACCG..............................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGC-GCGGGCG----GACGAC------GAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000100000000000000000000
................................................................AACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000200000000000000
............................................TGT----------------AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................AACAACGGTTGATT--TTCACCCAACGCTCG...................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................ATGAAAACAACGGTTGATT--T.................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................CGAA-AAAACCGCCTGTTTTT---------------------------------------------------TA.....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGT------------GGAAGCGAA-AAAACCGCC.................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................A-----AAATTGT----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
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..................CGAC------GAGAA-A-----AAATTGT----------------AAACGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................................................................................................................................................................................ACGTGCTGCTCGCTGCG...........................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................CACCCAACGCTCGTGATT----T----TC...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CGCGGATGAAAACAACGGTATC......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ACGCTCGTGATT----T----TCGAC................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ATGA-----------GTGCGTGC----GAGTGTG--TGT--------.................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................AGAA-A-----AAATTGT----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTTT---------------------------------------------------TAACTGCATGA-----------GTGCGTGC----GAG..................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................T----------------AAACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACGAC------GAGAA-A-----AAATTGT----------------AA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.........................................AATTGT----------------AAACGCGGATGAAAA................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.CGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGA----------------TC.............................................................................................................................................................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAGAA-A-----AAATTGT----------------AAACGCG........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..GC-GCGGGCG----GACGAC------GAGAA-A-----AAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
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...........................................TTGT----------------AAACGCGGATGAAA.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................................................CTGCTCGCTGCGATTTTCGT--.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................GAGAA-A-----AAATTGT----------------AAACGCGGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................................................................................................................................................................................................................................ACGTGCTGCTCGCTGCGATT........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAACGGTTGATT--TTCACCCAACG.......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................A-----AAATTGT----------------AAACGCGGATG....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................................................................GT--------GTGTGCGTGCG--TGTAC--GTGTTC.......................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGC-GCGGGTG----GACGAC------GAGAA-A-----AAATTGA----------------AGACGCGGATGAAAACAACGGTGGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AGAAGAGAAACAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------CTGCGTGC----GGCTGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTCGT--AGTTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTTTGTGT----------------GGCCCCTGT--------------------------------------A---ACAGTAAATACTCGTGCG------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................GATT----T----TCGACCGC-TTTTGA--GT..................................................................................................................................................................................................................................................................................................................................2112.0020100100
..............................................................................................................................................................................................................................................................................TG--TGT--------GTGTGCGCGCG--TGTAC--GTGTT........................................................................................................................................................2612.0020000002
.............................................................................................................................................................................................................................................................................................GTGTGCGCGCG--TGTAC--GTGTT........................................................................................................................................................2111.0010001000
........................................AAATTGA----------------AGACGCGGATGA...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
...................................................................................................................................................................................T---------------------------------------------------TAACTGCATGC-----------CTGCGTGC----G....................................................................................................................................................................................................2111.0010000100
.........................................................................................................CGTGATT----T----TCGACCGC-TTTTGA--GT..................................................................................................................................................................................................................................................................................................................................2411.0010000010
.CGC-GCGGGTG----GACGAC------GAGAA-A-----AAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...............................................................................................................................................................................................................................................................................................................................................CGCGATTTCTGT--TGTTTTGTGT----------------GGC....................................................................................2511.0010000010
.................................................................................................................................................................................................................................................................................................................................................................TTGTGT----------------GGCCCCTGT--------------------------------------A---ACA.................................1911.0010000010
......................................................................GATGAAAACAACGGTGGATT--TTC...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
................GACGAC------GAGAA-A-----AAATTGA----------------AGACG..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.......................................................................ATGAAAACAACGGTGGATT--TT................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................................................GATGAAAACAACGGTGGATT--T.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..................................................................CGCGGATGAAAACAACGGTG........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
GCGC-GCGGGTG----GACGAC------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
.........................................................................................................................................................................................................................................................................GGCTGTG--TGT--------GTGTGCGCGCG--T...................................................................................................................................................................2211.0010001000
...................GAC------GAGAA-A-----AAATTGA----------------AGACGC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................AAAACAACGGTGGATT--TTCA..............................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.................................................................................................................................................................................................................................................................GTGC----GGCTGTG--TGT--------GTGTGCGC.........................................................................................................................................................................2211.0010000010
..........................................................................................................GTGATT----T----TCGACCGC-TTTTGA--GT..................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................GAC------GAGAA-A-----AAATTGA----------------AGACGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...............................................................................................................................GC-TTTTGA--GTGA------------AGAAGAG.............................................................................................................................................................................................................................................................................................................1911.0011000000
..........................................ATTGA----------------AGACGCGGATGAAAACAACG...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
...........................................................................................................................GACCGC-TTTTGA--GTGA------------AGAAGA..............................................................................................................................................................................................................................................................................................................2211.0010000010
..........................................................................................................................................................................................................................................................................GCTGTG--TGT--------GTGTGCGCG........................................................................................................................................................................1830.3310000010
droYak3
GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAGTTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AGAAGAGAAACAAACCGCCTGTTTTT---------------------------------------------------TAACTGCATGC-----------GTGCGTGC----GGGTGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTTGT--AGTTTAGACGCGCTGCTCGCCGCGATTTCTGT--TGTTTTGTGC----------------GGCCCCTGT--------------------------------------AACTACAGTAAATACTCGTGCG------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........G----GACGAC------GAGAA-A-----AAGTTGG----------------AAACGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................29111.0011000000000011
................................................................AACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................1814.00430100000000
................................A-A-----AAGTTGG----------------AAACGCGGATGAAAACAACGG..........................................................................................................................................................................................................................................................................................................................................................................................3013.00300000000003
..........................................................................................................................CGACCGC-TTTTGA--GTGA------------AGAAGAGAAAC.........................................................................................................................................................................................................................................................................................................2813.00300000000003
...............................................................................................................................GC-TTTTGA--GTGA------------AGAAGAGAAACAAACC....................................................................................................................................................................................................................................................................................................2812.00200200000000
..............................................................................................CACCCAACGCTCGTGATT----T----TCGAC................................................................................................................................................................................................................................................................................................................................................2412.00201100000000
..............................................................................................CACCCAACGCTCGTGATT----T----T....................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................AC--GTGTTTGT--AGTTTAGAC..........................................................................................................................................1911.00100100000000
...............................................................AAACGCGGATGAAAACAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................ATT----T----TCGACCGC-TTTTGA--GTGA------------A...................................................................................................................................................................................................................................................................................................................2311.00101000000000
.....................C------GAGAA-A-----AAGTTGG----------------AAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................GTTTTGTGC----------------GGCCCCTGT--------------------------------------AACTA...................................2311.00101000000000
............................................................................................................................................................................................................................................................................................................................GTTTAGACGCGCTGCTCGCCGC............................................................................................................................2211.00100000010000
...........................................................................................................................................................GAAGAGAAACAAACCGCCTGC..............................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................AACGCGGATGAAAACAACGG..........................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
...C-GCGGGCG----GACGAC------GAGAA-A-----AAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................................................................TTTCTGT--TGTTTTGTGC----------------GGCC...................................................................................2111.00100100000000
......................................................................................GATT--TTCACCCAACGCTCGTGATT----T----TC...................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................................TTGG----------------AAACGCGGATGAAAACAAC............................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............................................................................AACAACGGTTGATT--TTCACCCAAC........................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..............................................................................CAACGGTTGATT--TTCACCC...........................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...C-GCGGGCG----GACGAC------GAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
...................GAC------GAGAA-A-----AAGTTGG----------------AAAC...........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...C-GCGGGCG----GACGAC------GAGAA-............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
droEug1
GCGC-GCGGGCG----GACGAC------GAGAA-A-----AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCACCCAACGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AG-----AAAAAACCCGCCTGATTTT---------------------------------------------------TAACTGCATG-------------TGCGTGC----AAGTGTG--TGTGTG----ACGGTGTGCGCG--TGTAC--GTGTTCGT--A---TAGACGCGCT-----TCTCCATTTCTGT--TGTTTAGTGT----------------GGCCCCTGT--------------------------------------AACTACAGTAGATACCCGTGTA------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGC-G---GCC----GAGG---------AAAA-ACGGAAAAATTGG----------------AAACGCGGATGAAAGCAACGGTG-GTT--TTCGCCCGATGCTCGTGATT----T----TCGACCGC-TTTTGA--GTGA------------AG---AGA-AAAACCCGCCTGTTTC--------------------------------------------------------------A-----------GTGCGTGC----GAGTGTGTGTGT--------GTGCGCGCGCG--TGTAC--GTGTTCGT--TTTCCAGACGCGCC-----CCGCGATTTCTGT--GCTGCCGAGT----------------GGCCCCTGT--------------------------------------AACTACAGTAAATACTCGCGCG------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTTGCGCGGACG----GACG---------AGAA-------AAATTGG----------------AAACGCGGATGAAAACAACGGTTGATT--TTCGCCCGACGCTCGTGATT----T----TCGACCGC-TTTTGAAAGTGA------------AG---AAAAAAAACCCGCCTGTTTTT------G--------------------------------------------TGGCTGCATG-------------TGCGTGC----GAG--------T--------GTGTGCGTGCG--TGTAC--GTGTTCGT--TTTGTAGACGCGCT-----TCGCGATTTCTGTGTTGTTTTGTGT----------------GGCCCCCGT--------------------------------------AACTACAGTAAATACTCGCGTG------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCGT-GCGGGCG----GACGA---AGTCGAGA--------AAATTGG-ACGAAAG-CACTAGAAAACACGGATGAAAACAACGGCGCATT--------CG--GCTCGTGATT---------TCGACCGC-TTTTGA--GTGA------------------G--AAAACCCGCCTGTTTTT------C--------------------------------------------TAACTGCATTTTA--AAGCGGAGTGCGTGC----G--TGTG--TGT--------GTCTGTGCGCG--TATAC--GTGTTCGATTCGTTTGGACGCGCT-----TCGCCGTTTCTGT--TGTTCTGTGT----------------GGCTCCTGT--------------------------------------A-CTACAGTAATTACTCGTGTG------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGC-GCGGGCG----GACGACGAAATCGTGAG-A-----AAATTGA-ACGAAAGCCACTGGAAAACACGGATGAAAACAACGGCGCATT--------CG--GCTCGTGATT---------TCGACCGC-TTTTGA--GTGA------------------GA-AAAACCCGCCTGTTTTTTT----C--------------------------------------------TAACTGCATTTTA--AAGC---GTGCGTGT----G--CGTG--TGT--------GTGTGCGCGCG--TGTAC--GTGTTCGATTCGTTTGGACGCGCT-----TTGCAATTTCTGT--TATTCTGTGT----------------GGTTCCTGT--------------------------------------A-CTACAGTAAATACTCGCGTA------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGC-GCG--CGGACCGCGGAC------GAAAG-A-----AAATCGGAAC------CTC-GGAAAAGACGGATGAAAACAACGGCG-CTTCGTCCGCTCGA--CTCGTGATT---TT----TCTACCGC-TTTTGA--GTGA------------------G---AAACCCGCCTGTTTTT---------------------------------------------------TAACTGCATGT-A--AAGCGGACTGCGTGT----G--CGTG--TGT--------TTGTGCGCGCG--TGTAC--GTGTACGT--T---T---------------CGCG-TTTCTGT--TGTTTTGTGT----------------GGCCCCTGT--------------------------------------AAATACAGTAAATACTCCAGTA------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGTCGCGGGCG----GATGA---------AAAAA-----AAACTG-----------------------------AAACAACGGCG--TT--TGCGGCC-ACGCTCGTGTTT----A----TC--CTGT-TTTAGA--G--A------------ATA-TTAAAACAAATCGCCTGTTTTTCCCGTT-TT------------------------CG--------TGAATTAAAAACGG----------------CTGCGTGG----GCGTGTG--TGT--------GTGT-CGTTCG--TGTCC--GTGTG------------------------------------A--TATATTCCGG----------------GGCTCCTTTAGCCT----------------------------------TATACAGTAAATACTCG----------------------SizeHit CountTotal NormTotal
No Reads
droAna3
C-----------------------------------------------------------------------------------------------------GCTCGTGATTGATTGTCCGTCGCCGCCTTTTTGG--G--AACGGTGCAGTTAAG----------A-GTCCCCGTTTTTTCCA-----------------------------------------------GTACTGCATGCCA----GCGGTTTGCGTGC----G--TCTC--TGT--------GTGTGTGTGTG--TGTAC--GTGTGAG----GCCTGGACGCGCG-----CCGTGATTGTTGT--TTTTCTGCGC----------------CGCCC--GTAG------------------------------------CCGTACAGTAAATATTCGGCTTACAGCCAGCGTAAGTGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................GTGATTGTTGT--TTTTCTGCGC----------------CGCC...................................................................................2511.001010000
.....................................................................................................................................................................................CCA-----------------------------------------------GTACTGCATGCCA----GC....................................................................................................................................................................................................................1811.001010000
....................................................................................................................................................................................................................................................................................................................TGAG----GCCTGGACGCGCG-----C...............................................................................................................................1811.001010000
.............................................................................................................................................................................................................................................................TTGCGTGC----G--TCTC--TGT--------GT...............................................................................................................................................................................1811.001100000
.............................................................................................................................................................................................................................................................................................GTGTGTGTGTG--TGTAC--GTGTGAG----GCCT..............................................................................................................................................2711.001000010
................................................................................................................................................................................................................................................................CGTGC----G--TCTC--TGT--------GTGTGTGT.........................................................................................................................................................................2111.001010000
droBip1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTTTTTCCA-----------------------------------------------GTACTGCATGCCAGCCAGCGTACGGCG------------------T--------GCGTGTGTGTG--TGTAC--G--TACGA--GGCCTGGACGCGGG-----CCGTGATTGTTGT--TTTTCTGCGC------CGTTTTTTC-CG--CCCGTAGCCGTACAGTGAATACTACTGGTTAGCTG----------------------------------CCAGCGTAAGTGGCSizeHit CountTotal NormTotal
No Reads
dp5
ACG-----------------GT------GAAAAAA-----AAACCAA-ACG---------AGAAAACGAGAAGAGAAACAACG------C--CCCACCCAAGGCACGAAAGT----T----T---------TTCAA--GTGT------------------------ATCCTTCTGCTGCTGT----ATT------------------------GG--------TG------TATCTGTGTGC-----------GTGCGTGT----GTGTGTG--TGT--G----TGT----GTGTGTGTGTGTGTGCGTGCGT--GA--------------------GTGTTTTTGT--TGCC--GCACCCCGAATATCCTGTGTG---CCTGT--------------------------------------GCCTAAATTAAA----------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................TTCTGCTGCTGT----ATT------------------------GG--------TG------TT.....................................................................................................................................................................................................................................2111.0010010000000
...............................................................................................................................................................................................................................................TGC-----------GTGCGTGT----GTGTGTG--TGT--G----T.................................................................................................................................................................................23200.0510001000000
................................................................................................................................................................................................................................................................CGTGT----GTGTGTG--TGT--G----TGT----GTGT.......................................................................................................................................................................23200.0510000010000
..........................................................................................................................................................................................................................................................................TGTGTG--TGT--G----TGT----GTGTGTGTGTGTG..............................................................................................................................................................26200.0510001000000
droWil2
GCCA-ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------------------------------------------------TATATGTATGT-----------GTATGTGT----ATGTATG--TGT--G----TGCGTGTGTGTG--TGTGT--GTG----------------------------------------------------------------------------------------------------------------------------------CATGTA------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................GT--G----TGCGTGTGTGTG--TGTGT--GTG----------------------------------------------------------------------------------------------------------------------------------C.......................24200.05101000
droVir3
CAGC-GGCAGCA----AC-------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCG---------ACGCATGCTAAATTTAAAGGCGTGCGAAACAACT--------T--GTGCGTGC-----------GTGCGTGC----TTATGTG--TGT--G----TGTGTG--TGTG--TGTGTGTGTGTGCAT--AA----ATTATGCTGCTTAGC---------------------------------------------------------------------------------------------------------GCG------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................TGC----TTATGTG--TGT--G----TGTGTG--..........................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GTGC----TTATGTG--TGT--G----TGT...............................................................................................................................................................................18200.051000000000000000000001000000000000000000000000000000000000000000
droMoj3
AAGT-AAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTGTG---------------------------------------------------TGAGTGTGTAC-----------GCGCGTAC----GATAGTG--TGC--------GCGCCTGTGGA--TGTGT--GGGCTTGC--ATGCT-AACGAGT---------------------TGTTTTTTGC----------------G-CCTCTGT------ACAGTTAATATTCATATTTTGCTGTTAACCGCA-CTGCACTTGAAGCAAATGTA------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................AGTG--TGC--------GCGCCTGTGGA--TGT.................................................................................................................................................................2111.001000100
.............................................................................................................................................................................ATTTGTG---------------------------------------------------TGAGTGTGTAC-----------GCGCGTAC----G....................................................................................................................................................................................................2711.001010000
..............................................................................................................................................................................................................................................................................................CGCCTGTGGA--TGTGT--GGGCTT.......................................................................................................................................................2111.001000100
......AACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTTGTG---------------------------------------------------TGAGTG.................................................................................................................................................................................................................................1911.001100000
droGri2
GACT-GCC-----------------------------------------------------------------------------------------------C--------------------------TTGTGG--G--TCCTGGAAAT-------------TGAAAAGCATGCTTATTC-----------------------ACGGTGTGTGTG--------------CGAGTGTGTGT-----------GTGTGTGCGTGTGTGTGTG--TGT--GCGTGTGTGTG--TGTG--TGTGTGTGTGTGCGT--AA-----------------------------------------------------------GCGATTGC--------------------------------------GTGTGCAGGAAA-ATTAGTTTG------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................CGAGTGTGTGT-----------GTGTGTGCGTGTGTG..................................................................................................................................................................................................2680.13110
......................................................................................................................................................................................................................................................................TGTGTGTGTG--TGT--GCGTGTG................................................................................................................................................................................20200.10202

Generated: 05/18/2015 at 08:42 AM