ID:

dsi_29802

 Coordinate:

2l:13399134-13399213 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.2 -3.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. dsi_29802  2l:13399163-13399191 +
  2. node_30916:2438-2466 +
star

Sense Strand Reads

TTGCTGCAGGCCACCCACAAGATCCACAAATGATTCGCCATCGAAAAAAGGTGATTACCTTTCAGTAGCTAATCGTCCTTCTGCCTGTTACATACTTTTTAACGAATTTTCAATCCTTTTATCCTTTAAGCCTGTCAGGAATATTCGAATGACAAGAGTTTCTGCCCACCGGAACTCCTA
**************************************************.((((((.((......)).)))))).......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M025
embryo
 SRR902009
testis
....................................................................................................................................................ATGACAAGAGTTTCT................. 15 0 2 20.00 40 37 1 0 2 0 0 0 0
.................................................................................TGCCAGTTACATACTTTTTAACGAATT........................................................................ 27 1 8 4.38 35 0 21 12 0 2 0 0 0
...............................................................................TCTGCCTGTTACATACTTTTTAACGAATT........................................................................ 29 0 2 1.50 3 0 2 0 1 0 0 0 0
.................................................................................TGCCTGTTACATACTTTTTAACGAATT........................................................................ 27 0 2 1.50 3 0 1 1 1 0 0 0 0
.................................TTCGCCATCGAAAAAAG.................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TACATACTTTTTAACGAATT........................................................................ 20 0 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAACTAATT........................................................................ 30 1 2 0.50 1 0 0 0 1 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAACGA........................................................................... 27 0 11 0.45 5 0 0 1 0 3 0 1 0
..............................................................................TTCTGCCAGTTACATACTTTTTAACGAATT........................................................................ 30 1 8 0.38 3 0 3 0 0 0 0 0 0
....................................................................................................................................................ATGACAAGAGTTTCA................. 15 1 15 0.33 5 0 3 1 1 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAACGAA.......................................................................... 28 0 11 0.27 3 0 1 1 0 1 0 0 0
................................................................................CTGCCAGTTACATACTTTTTAACGAATT........................................................................ 28 1 8 0.25 2 0 1 1 0 0 0 0 0
...............................................................................TCTGCCAGTTACATACTTTTTAACGAATT........................................................................ 29 1 8 0.25 2 0 0 2 0 0 0 0 0
.................................................................................TGCCTGTTACATACTTTTTAACGAA.......................................................................... 25 0 13 0.23 3 0 1 1 0 1 0 0 0
.............................................................................CTTCTGCCTGTTACATACTTTTTAAC............................................................................. 26 0 9 0.22 2 0 0 1 0 1 0 0 0
..............................................................................TTCTGCTTGTTACATACTTTTTAACGA........................................................................... 27 1 18 0.22 4 0 0 1 0 3 0 0 0
.............................................................................CTTCTGCCTGTTACATACTTTTTAACGAA.......................................................................... 29 0 9 0.22 2 0 2 0 0 0 0 0 0
.............................................................TCAGCAGCTAATCATCCGTCT.................................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0 0 0
.................................................................................TGCTTGTTACATACTTTTTAACGAA.......................................................................... 25 1 20 0.20 4 0 0 1 0 3 0 0 0
..............................TCATTCGCGATCGAAAAA.................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0
..........................................................................GTCCTTCTGCCTGTAACATACT.................................................................................... 22 1 7 0.14 1 0 0 0 1 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAAAGA........................................................................... 27 1 15 0.13 2 0 0 0 1 1 0 0 0
..........................................................................GTCCTTCTGCCTGTTAAATACT.................................................................................... 22 1 9 0.11 1 0 1 0 0 0 0 0 0
.............................................................................CTTCTGCCTGTTACATACTTTTTAACGA........................................................................... 28 0 9 0.11 1 0 0 1 0 0 0 0 0
....................................................................................................................................................ACGACAAGAGTTTCT................. 15 1 9 0.11 1 1 0 0 0 0 0 0 0
..............................................................................TTCTGCTTGTTACATACTTTTTAACGAA.......................................................................... 28 1 18 0.11 2 0 0 0 0 2 0 0 0
.........................................................................................ACATACTTTTTAACGA........................................................................... 16 0 20 0.10 2 1 0 1 0 0 0 0 0
...........................................................................TCCTTCTGCCTGTTACATACTTCATT............................................................................... 26 3 20 0.10 2 0 0 0 0 2 0 0 0
.............................................................................CTTCTGCCTGTTACATACT.................................................................................... 19 0 20 0.10 2 0 2 0 0 0 0 0 0
....................................................................................................................................................................CCCTCCGGAACTCCT. 15 1 11 0.09 1 0 1 0 0 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAACGAAT......................................................................... 29 0 11 0.09 1 0 1 0 0 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAAC............................................................................. 25 0 11 0.09 1 0 0 0 0 0 1 0 0
.................................................................................TGCCAGTTACATACTTTTTAACAAATT........................................................................ 27 2 11 0.09 1 0 0 1 0 0 0 0 0
....................................................................................................................................................AAGACAAGAGTTTCT................. 15 1 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................................................................................ATGACAAGAGTTTCTGAT.............. 18 2 12 0.08 1 1 0 0 0 0 0 0 0
................................................................................CTGCCTGTTACATACTTTTTAACGAA.......................................................................... 26 0 12 0.08 1 0 0 0 0 1 0 0 0
.............................................................................CTTCTGCCTGTTACATACTTTTTAAAGAA.......................................................................... 29 1 12 0.08 1 0 0 0 1 0 0 0 0
.................................................................................TGCCTGTTACATACTTTTTAACGA........................................................................... 24 0 13 0.08 1 0 0 1 0 0 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAAAGAA.......................................................................... 28 1 14 0.07 1 0 0 0 1 0 0 0 0
...............................................................................TCTGCCTGTTACATACTTTTTAAAGAA.......................................................................... 27 1 15 0.07 1 0 0 0 1 0 0 0 0
.............................................................................CTTCTGCTTGTTACATACTTTTTAACGAA.......................................................................... 29 1 16 0.06 1 0 0 0 0 1 0 0 0
.................................................................................TGCCTGTTACATACTTTTTAAAGAA.......................................................................... 25 1 16 0.06 1 0 0 0 1 0 0 0 0
............................................................................CCTTCTGCCTGTTACATACTTTTTA............................................................................... 25 0 18 0.06 1 0 0 0 0 0 1 0 0
.............................................................................CTTCTGCCTGTTACATACTTTTTA............................................................................... 24 0 19 0.05 1 0 0 1 0 0 0 0 0
...............................................................................TCTGCTTGTTACATACTTTTTAACGA........................................................................... 26 1 19 0.05 1 0 0 0 0 1 0 0 0
...........................................................................TCCTTCTGCCTGTAACATACTTTTTTT.............................................................................. 27 3 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................TCCTTCTGCCTGTTACATACTTTCTT............................................................................... 26 2 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................TCCTTCTGCTTGTTACATACTTTTTA............................................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................TCCTTCTGCCTGTTACATACTTT.................................................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................TCCTTCTGACTGTTACATACTCTTT................................................................................ 25 2 20 0.05 1 0 0 0 1 0 0 0 0
...............................................................................TCTGCCTGTTACATACTTTTTA............................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................TTCTTCTGCCTGTTACATACTTTTTAA.............................................................................. 27 1 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................TCCTTCTGCCTGTTAAATACTTTTTA............................................................................... 26 1 20 0.05 1 0 0 0 0 0 1 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTAAA............................................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................TCCTTCTGCCTGTTACATACTATTTTT.............................................................................. 27 3 20 0.05 1 0 0 0 0 1 0 0 0
..............................................................................TTCTGCCTGTTACATACTTTTTA............................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................TCCTTCTGCCTGTGACATACTTCTTT............................................................................... 26 3 20 0.05 1 0 0 0 0 0 1 0 0
......................................................................................GTTACATACTTTTTAACGAA.......................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................TGCCTGTTAAATACTTTTTAACGA........................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1
...........................................................................TCCTTCTGCCTGTTGCATACTTTATA............................................................................... 26 2 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................TCTGCCTGTTACATAC..................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

AACGACGTCCGGTGGGTGTTCTAGGTGTTTACTAAGCGGTAGCTTTTTTCCACTAATGGAAAGTCATCGATTAGCAGGAAGACGGACAATGTATGAAAAATTGCTTAAAAGTTAGGAAAATAGGAAATTCGGACAGTCCTTATAAGCTTACTGTTCTCAAAGACGGGTGGCCTTGAGGAT
**************************************************.((((((.((......)).)))))).......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...............................................................................AGACGGACAATGTATGAAAAATTGCTT.......................................................................... 27 0 12 2.00 24 4 6 6 0 6 0 2 0 0 0
...........................................................................AGGAAGACGGACAATGTATGAAAAAT............................................................................... 26 0 16 1.25 20 9 4 3 0 4 0 0 0 0 0
...........................................................AAAGTCATCGATTAGCAGGAAGACG................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......TCCGGTGGGTGTTCTAGGT.......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................GCTCACTGTGCTCAAAAACGGGT............ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................CGGACAATGTATGAAAAATTGCTT.......................................................................... 24 0 13 0.77 10 5 1 2 0 2 0 0 0 0 0
..................................................................................................................GGAAAATAGGCAATTCG................................................. 17 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0
...........................................................................AGGAAGACGGACTATGTATGAAAAATT.............................................................................. 27 1 15 0.60 9 0 7 2 0 0 0 0 0 0 0
...........................................................................................................................................................CTCAAAAACGGGTGGCCTTC..... 20 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..........................................................................CAGGAAGACGGACAATGTATGAAAA................................................................................. 25 0 4 0.50 2 1 0 0 0 0 0 1 0 0 0
...............................................................................AGACGGACAATGTATGAAAAATTGCT........................................................................... 26 0 12 0.50 6 0 3 3 0 0 0 0 0 0 0
..........................................................................CAGGATGACGGACAATGTATGAAAA................................................................................. 25 1 6 0.33 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................................GGAAAATAGGAAACTCGG................................................ 18 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GAAAATAGGAAACTCG................................................. 16 1 7 0.29 2 1 0 0 0 0 0 0 0 1 0
...........................................................................AGGAAGACGGACTATGTATGAAAAAT............................................................................... 26 1 18 0.28 5 1 2 2 0 0 0 0 0 0 0
.........................................................................................................TAAGAGTGAGGAAAATAGCAA...................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................................AACAGGAAGACGGACAATGTGTGAAAA................................................................................. 27 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.............................................................AGTCGTCGATTAGTAGGCAG................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
...........................................................................AGGAAGCCGGACAATGTATGAAAA................................................................................. 24 1 20 0.20 4 0 4 0 0 0 0 0 0 0 0
...........................................................................AGGAAGACGGACAATGTAT...................................................................................... 19 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0
........................................................................AACAGGATGACGGACGATGTATGAAAA................................................................................. 27 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................GAAATTCTGACAGTC.......................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
...............................................................................AGACGGACAATGTATGAAAAATTGC............................................................................ 25 0 12 0.17 2 0 2 0 0 0 0 0 0 0 0
...........................................................................AGGAAGACGGACAATGTATGAAAAA................................................................................ 25 0 18 0.17 3 0 2 0 0 1 0 0 0 0 0
........................................................................TGCAGGAAGACGGACAATGTAT...................................................................................... 22 1 12 0.17 2 1 0 0 0 0 0 0 0 1 0
.................................................................................ACGGACAATGTATGAAAAATTGCTT.......................................................................... 25 0 13 0.15 2 0 0 0 0 0 0 2 0 0 0
..................................................................................CGGACAATGTATGAAAAATTGCTTA......................................................................... 25 0 13 0.15 2 0 0 0 0 2 0 0 0 0 0
...........................................................................AGGAAGACGAACAATGTATGAAAAAT............................................................................... 26 1 20 0.15 3 0 1 0 0 2 0 0 0 0 0
..........................................................................................................................GGAAATTTGGACTGTCATTAT..................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................GGAAAATAGCCAATTCG................................................. 17 2 15 0.13 2 2 0 0 0 0 0 0 0 0 0
.................................................................................ACGGTCAATGTATGAAAAATTGCTTAA........................................................................ 27 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
...................................................................................GGACAATGTATGAAAAATTGCTT.......................................................................... 23 0 16 0.13 2 2 0 0 0 0 0 0 0 0 0
..........................................................................CAGGAAGACGGACAATGTAAGAAAA................................................................................. 25 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0
..................................................................................CGGTCAATGTATGAAAAATTGCTTAA........................................................................ 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0
...............................................................................AGACGAACAATGTATGAAAAATTGCT........................................................................... 26 1 19 0.11 2 1 0 0 0 1 0 0 0 0 0
...............................................................................AGACGAACAATGTATGAAAAATTGCTT.......................................................................... 27 1 19 0.11 2 1 1 0 0 0 0 0 0 0 0
.........................................................................ACAGGAAGCCGGACAATGTATGAAAA................................................................................. 26 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0
..................................................................................CGGACAATGTATGAAAA................................................................................. 17 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0
..............................................................................AAGACGGACAATGTATGAAAAATTGCT........................................................................... 27 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.........................................................................ACAGGATGACGGACAATGTATGAAAA................................................................................. 26 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
................................................................................GACGGACAATGTATGAAAAATTGCTT.......................................................................... 26 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0
................................................................................GACGGACAATGTATGAAAAATTGCT........................................................................... 25 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0
.........................................................................ACAGGAAGACGGACAATGTGTGAAAA................................................................................. 26 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0
..................................................................................CGGATAATGTATGAAAAATTGCTT.......................................................................... 24 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0
...............................................................................AGACGGACAATGTATGAAAAATTTC............................................................................ 25 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0
.........................................................................GCAGGAAGACAAACGATGTATGAAAA................................................................................. 26 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0
..................................................................................CGGACAATGTATGAAAAATTTCTT.......................................................................... 24 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
........................................................................TACAGGAAGCCGGACAATGTATGAAAA................................................................................. 27 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................GGAAAATAGGATACTCG................................................. 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0
.......................................................................TAGAAGGAAGACCGTCAATGTATGAAAA................................................................................. 28 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................................................AGGAAGACGGACAATGT........................................................................................ 17 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..........................................................................CAGGAAGACAAACGATGTATGAAAA................................................................................. 25 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................GGAAAATAGGAAACT................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................ACAATGTATGAAAAATTGC............................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:13399084-13399263 + dsi_29802 TTGCTGCAGGCCACCCACAAGATCCACAAATGATTCGCCATCGAAAAAAGGTGATT----------------------------------ACCTTTCAGTAGCTAATCGTCCTTCTGCCTGTTACATACTTTTTAACGAATTT--TCA----------------------A-----------------------------------------------------TC-------------------------------------------CTT--TTA-TCCTTTAAGCCTGTCAGGAATATTCGAATGACAAGAGTTTCTGCCCACCGGAACTCCTA
droSec2 scaffold_3:79171-79350 + TTGCTGCAGGCCACCCACAAGATCCACAAATGATTCGCCATCGAAAAAAGGTGATT----------------------------------ACCTTTCAGTAGCTAATCGTCCTTCTGCCTGTTACATACTTTTTAACGAATTT--TCA----------------------A-----------------------------------------------------TC-------------------------------------------CTT--TTA-TCCTTTAAGCCTGTCAGGAATATTCGAATGACAAGAGTTTCTGCCCACCGGAACTCCTA
droEre2 scaffold_4929:11651963-11652175 - TTGCTGCAGGGCACCTACGAGACCCACGTATGATTCGCCATCGAAAAGAGGTGGGT----------------------------------ACCTTCCAGTAGCCAAACGA-----------------------------A------TAAAAATACTATTCAATAAGCAAAACATTTA--------------------------ATATATAA------------------------TGTAAACATTAA---TCAATATTCATTTATACATAATCA--ATGCTGCTAAGCCTGCCAGGAGTATTCAAACGACCAGTCTTTCTGCCCACCGGAGCTGCTC
droYak3 2L:10227127-10227399 + CTGTTGCAGGCCACCCACAAGACCCACGAATGACTCGCCGTCGAGAAGAGGTTGGT----------------------------------ACCTTCCATT---TAATGGAAGGAATGCTTGTCATTCACATTTAAGCAAATGAACTCT----------------------ACATTTAAATATCAAAATATGTGTTAAAATGGCATATATAATTGGATTTAAACACGGTTTTTATGTGTAAGCATTAAAAATCCA-ATTCATTT---CAAAATCACCT-GCTGTCAAGCCTGCCAGGATTATTCAAACGACCAGTCCTTCTGCCCACCGGAGCTCCTC
droEug1 scf7180000409452:383443-383592 + TTGCTGTAAGCGTCCAACTATACCTAAACATCAAACTCTATCGGAAAGAGGTATTTG-----TAAAAA---AATAATGTTTAAGAATAGTACCTA---------------------------------------------------CA----------------------A-----------------------------------------------------T-----------------------------------------------------CCCTCTCAGCCTGCCAGGACTACTCAAACGACAAATCCTTCTGCCCACCGGAGTTACTT
droTak1 scf7180000415081:339310-339366 - TCCTTCTACCTG-------------------------------------------------------------------------------------------------------------TTACATACTTTTGCACGAATCTAGTAT----------------------A-----------------------------------------------------CC-------------------------------------------CTT--TTA-CTCTACGAG--------------------------------------------------
droRho1 scf7180000780107:263445-263569 - TTGTTGTATGCGTCCTACAATACCCAAGTATGAAATCCCATCGGAAAAT--------------------------------------------------------------------------ATTTACTTATGTATGAGT------------------------------------------------------------------------------------------------------------------------------------------TGACACAGCCTGCCTGAATTACTCCGACGACAGGTGCTTCTTCCCACCGGAAATACTT
droFic1 scf7180000453925:177719-177872 - TTGCTGCAGGCGTCCTTCAATACCCCATTATAAAAGTCAATCGGAAAGTGGTTTGTATTATGTACTAAGCTTAAAAT------------------------------------------AGTAACCTACTTAAATACGAAC---------------------------------------------------------------------------------------------------------------------------------------------CATAGCATGTTTTGATTATTCCAACGACAAGACTTTTTGCCCATCGGAATTACTT
droKik1 scf7180000302643:116466-116625 - ATGCTGTCCGCGTCCCACAGTGCGAACCTACACAAGTAAATCGGCAATAGGTAAGTT---AGTACTAAGATTATAACATTAACTAGCA-------------------------------------------------GAATTT--ATA----------------------A-----------------------------------------------------TC-------------------------------------------T----TTA-TCTTTCCAGCTTGTCTGAACTGGTCCAATAACAGGGAACTTTGTCCGCCTCATAAACTT
droBip1 scf7180000396769:311863-311943 - TTTTAAA----------------------------------------------------------------------------------------------------------------------------------AATTTT--TAA----------------------T-----------------------------------------------------TT-------------------------------------------TAT--CGT-TACTTTAAGTTTGCGAGAAATTCGCTAGCGACTCATTTATCTGCCCAA---AAATAGGG
dp5 4_group4:5910020-5910071 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATGTCTAAGCTACGCGAGTAACACGACTTTTTGTCCGAGGCATTTGTTT
droPer2 scaffold_16:995151-995202 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATGTCTAAGCTACGCGAGTAACACGACTTTTTGTCCGAGGCATTTGTTT
droWil2 scf2_1100000004585:3019210-3019259 - TTTCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAAAAATATTCAAATA------CTTATTGTAAAGGAAGACCTCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGCTGCAGGCCACCCACAAGATCCACAAATGATTCGCCATCGAAAAAAGGTGATT----------------------------------ACCTTTCAGTAGCTAATCGTCCTTCTGCCTGTTACATACTTTTTAACGAATTT--TCA----------------------A-----------------------------------------------------TC-------------------------------------------CTT--TTA-TCCTTTAAGCCTGTCAGGAATATTCGAATGACAAGAGTTTCTGCCCACCGGAACTCCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................ATGACAAGAGTTTCT.................15220.0040000000210037000000
.................................................................................................................TCTGCCTGTTACATACTTTTTAACGAATT...................................................................................................................................................................................................2921.50300000012000000000
...................................................................................................................TGCCTGTTACATACTTTTTAACGAATT...................................................................................................................................................................................................2721.50300000011010000000
.................................TTCGCCATCGAAAAAAG...............................................................................................................................................................................................................................................................................................1711.00100000000001000000
..........................................................................................................................TACATACTTTTTAACGAATT...................................................................................................................................................................................................2020.50100000001000000000
................................................................................................................TTCTGCCTGTTACATACTTTTTAACGA......................................................................................................................................................................................................27110.45500100000310000000
.................................................................................................................................................................................................................................................................................................................ATGACAAGAGTTTCA.................15150.33500000013010000000
................................................................................................................TTCTGCCTGTTACATACTTTTTAACGAA.....................................................................................................................................................................................................28110.27300000001110000000
...................................................................................................................TGCCTGTTACATACTTTTTAACGAA.....................................................................................................................................................................................................25130.23300000001110000000
...............................................................................................................CTTCTGCCTGTTACATACTTTTTAAC........................................................................................................................................................................................................2690.22200000000110000000
...............................................................................................................CTTCTGCCTGTTACATACTTTTTAACGAA.....................................................................................................................................................................................................2990.22200000002000000000
...............................................................................................................CTTCTGCCTGTTACATACTTTTTAACGA......................................................................................................................................................................................................2890.11100000000010000000
...........................................................................................................................ACATACTTTTTAACGA......................................................................................................................................................................................................16200.10200000000011000000
...............................................................................................................CTTCTGCCTGTTACATACT...............................................................................................................................................................................................................19200.10200000002000000000
................................................................................................................TTCTGCCTGTTACATACTTTTTAACGAAT....................................................................................................................................................................................................29110.09100000001000000000
................................................................................................................TTCTGCCTGTTACATACTTTTTAAC........................................................................................................................................................................................................25110.09100000000000010000
.................................................................................................................................................................................................................................................................................................................ATGACAAGAGTTTCTGAT..............18120.08100000000001000000
..................................................................................................................CTGCCTGTTACATACTTTTTAACGAA.....................................................................................................................................................................................................26120.08100000000100000000
...................................................................................................................TGCCTGTTACATACTTTTTAACGA......................................................................................................................................................................................................24130.08100000000010000000
..............................................................................................................CCTTCTGCCTGTTACATACTTTTTA..........................................................................................................................................................................................................25180.06100000000000010000
...............................................................................................................CTTCTGCCTGTTACATACTTTTTA..........................................................................................................................................................................................................24190.05100000000010000000
.............................................................................................................TCCTTCTGCCTGTTACATACTTT.............................................................................................................................................................................................................23200.05100000000010000000
.................................................................................................................TCTGCCTGTTACATACTTTTTA..........................................................................................................................................................................................................22200.05100000000010000000
................................................................................................................TTCTGCCTGTTACATACTTTTTAAA........................................................................................................................................................................................................25200.05100000000100000000
................................................................................................................TTCTGCCTGTTACATACTTTTTA..........................................................................................................................................................................................................23200.05100000001000000000
........................................................................................................................GTTACATACTTTTTAACGAA.....................................................................................................................................................................................................20200.05100000000100000000
.................................................................................................................TCTGCCTGTTACATAC................................................................................................................................................................................................................16200.05100000001000000000
droSec2
TTGCTGCAGGCCACCCACAAGATCCACAAATGATTCGCCATCGAAAAAAGGTGATT----------------------------------ACCTTTCAGTAGCTAATCGTCCTTCTGCCTGTTACATACTTTTTAACGAATTT--TCA----------------------A-----------------------------------------------------TC-------------------------------------------CTT--TTA-TCCTTTAAGCCTGTCAGGAATATTCGAATGACAAGAGTTTCTGCCCACCGGAACTCCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droEre2
TTGCTGCAGGGCACCTACGAGACCCACGTATGATTCGCCATCGAAAAGAGGTGGGT----------------------------------ACCTTCCAGTAGCCAAACGA-----------------------------A------TAAAAATACTATTCAATAAGCAAAACATTTA--------------------------ATATATAA------------------------TGTAAACATTAA---TCAATATTCATTTATACATAATCA--ATGCTGCTAAGCCTGCCAGGAGTATTCAAACGACCAGTCTTTCTGCCCACCGGAGCTGCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CTGTTGCAGGCCACCCACAAGACCCACGAATGACTCGCCGTCGAGAAGAGGTTGGT----------------------------------ACCTTCCATT---TAATGGAAGGAATGCTTGTCATTCACATTTAAGCAAATGAACTCT----------------------ACATTTAAATATCAAAATATGTGTTAAAATGGCATATATAATTGGATTTAAACACGGTTTTTATGTGTAAGCATTAAAAATCCA-ATTCATTT---CAAAATCACCT-GCTGTCAAGCCTGCCAGGATTATTCAAACGACCAGTCCTTCTGCCCACCGGAGCTCCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TTGCTGTAAGCGTCCAACTATACCTAAACATCAAACTCTATCGGAAAGAGGTATTTG-----TAAAAA---AATAATGTTTAAGAATAGTACCTA---------------------------------------------------CA----------------------A-----------------------------------------------------T-----------------------------------------------------CCCTCTCAGCCTGCCAGGACTACTCAAACGACAAATCCTTCTGCCCACCGGAGTTACTTSizeHit CountTotal NormTotal
No Reads
droTak1
TCCTTCTACCTG-------------------------------------------------------------------------------------------------------------TTACATACTTTTGCACGAATCTAGTAT----------------------A-----------------------------------------------------CC-------------------------------------------CTT--TTA-CTCTACGAG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTGTTGTATGCGTCCTACAATACCCAAGTATGAAATCCCATCGGAAAAT--------------------------------------------------------------------------ATTTACTTATGTATGAGT------------------------------------------------------------------------------------------------------------------------------------------TGACACAGCCTGCCTGAATTACTCCGACGACAGGTGCTTCTTCCCACCGGAAATACTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTGCTGCAGGCGTCCTTCAATACCCCATTATAAAAGTCAATCGGAAAGTGGTTTGTATTATGTACTAAGCTTAAAAT------------------------------------------AGTAACCTACTTAAATACGAAC---------------------------------------------------------------------------------------------------------------------------------------------CATAGCATGTTTTGATTATTCCAACGACAAGACTTTTTGCCCATCGGAATTACTTSizeHit CountTotal NormTotal
No Reads
droKik1
ATGCTGTCCGCGTCCCACAGTGCGAACCTACACAAGTAAATCGGCAATAGGTAAGTT---AGTACTAAGATTATAACATTAACTAGCA-------------------------------------------------GAATTT--ATA----------------------A-----------------------------------------------------TC-------------------------------------------T----TTA-TCTTTCCAGCTTGTCTGAACTGGTCCAATAACAGGGAACTTTGTCCGCCTCATAAACTTSizeHit CountTotal NormTotal
No Reads
droBip1
TTTTAAA----------------------------------------------------------------------------------------------------------------------------------AATTTT--TAA----------------------T-----------------------------------------------------TT-------------------------------------------TAT--CGT-TACTTTAAGTTTGCGAGAAATTCGCTAGCGACTCATTTATCTGCCCAA---AAATAGGGSizeHit CountTotal NormTotal
No Reads
dp5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATGTCTAAGCTACGCGAGTAACACGACTTTTTGTCCGAGGCATTTGTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATGTCTAAGCTACGCGAGTAACACGACTTTTTGTCCGAGGCATTTGTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAAAAATATTCAAATA------CTTATTGTAAAGGAAGACCTCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................A------CTTATTGTAAAGGAAGACCTCTT2421.00202000

Generated: 05/18/2015 at 10:44 AM