ID:

dsi_29791

 Coordinate:

2r:5795988-5796140 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.5 -12.0 -11.9

Flybase annnotation

Antisense to five_prime_UTR [2r_5796014_5796025_+]; Antisense to exon [2r_5796174_5796385_+]; Antisense to CDS [2r_5796174_5796385_+]; Antisense to intron [2r_5796119_5796173_+]; Antisense to CDS [2r_5796026_5796118_+]; Antisense to exon [2r_5796014_5796118_+]

No Repeatable elements found

Sense Strand Reads

TCCGATTTAAGCAGGCGCTGCAATAAAGGCATTAGGATGATGCGTAACTGGTATGTCCTAAGGTGACGTCACTTGGCACTTGGGTATGGCTTCCGCATGCTTGCCCAGCTTTATGGTCTCCCGGATATCCTTGATCAAGGCCTTTGACTCCTTTACAGCGCTCATTGTAAATATTTGTGTTTGTTTTCATATATTTCAAACAGTGATGGGTAACTTGATTTTGTCTAAAGCCAGTGTTGGTCAATGCTGCATA
****************************************************************************...(((((((.(((........))))))))))......................*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 O002
Head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.............................CATTAGAATGATGCGTTACT............................................................................................................................................................................................................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................TATCCTTGATCAAGGCCTTTTT.......................................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGCCATTGTTGATCATTGCTG.... 21 3 2 1.00 2 2 0 0 0 0 0 0 0
............................................................................CACTTGGGTATGGCTTCC............................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................TAAGGTGACGTCACTTGGCAC.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................TTTATGGTCTCCCGGATATCC........................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................AGGATGATGCGTAACTGGTATG...................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................GATATCCTTGATCAAGGCC............................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................CTTGATCAAAGCCTTAGAC......................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0
......................ATAAAGGCCTTAGGA........................................................................................................................................................................................................................ 15 1 4 0.25 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TAACTTGATATTGTATAAA........................ 19 2 6 0.17 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GCCATTGTTGATCATTGCTG.... 20 3 8 0.13 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................GCCACTGTCGGTCAATGCTC.... 20 3 8 0.13 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................GATTTTGTCTGAAGACGGT.................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0
..............................................................................CTTGGGAATGGCTTC................................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 0 0 1 0
.....................................................TGTCCTAAGATGAGCTCA...................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................CTTGAATTTGTCTGTAGCC..................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

#################-------------------------------------------------------#########################################################################################################----------------------------------------------------------------------------
AGGCTAAATTCGTCCGCGACGTTATTTCCGTAATCCTACTACGCATTGACCATACAGGATTCCACTGCAGTGAACCGTGAACCCATACCGAAGGCGTACGAACGGGTCGAAATACCAGAGGGCCTATAGGAACTAGTTCCGGAAACTGAGGAAATGTCGCGAGTAACATTTATAAACACAAACAAAAGTATATAAAGTTTGTCACTACCCATTGAACTAAAACAGATTTCGGTCACAACCAGTTACGACGTAT
***************************************************************************************************************************...(((((((.(((........))))))))))......................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...................................................................................................................................................GAGGAAATGTCGCGAGTA........................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................GTCGAAATACCAGAGGGC.................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................GGGCCTATAGGAACTAGTTCC................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................CGGAAACTGAGGAAATGTCG.............................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................TGAGGAAATGTCGCGAGTA........................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................ACCAGAGGGCCTATAGGAACTAGTTC.................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................TACCAGAGGGCCTATAGGAA......................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................CAGAGGGCCTATAGT........................................................................................................................... 15 1 5 0.80 4 0 0 0 0 3 1 0
........................................................................................................................................................................................AAAGAATATAAAGTTTGT................................................... 18 1 5 0.20 1 0 0 0 0 0 0 1
..........................................................................................AAGGTGTACGAAAGGGTC................................................................................................................................................. 18 2 12 0.17 2 0 0 0 0 0 2 0
......................................................................TGAACCGTGAACCTAT....................................................................................................................................................................... 16 1 11 0.09 1 0 0 0 0 0 0 1
...............................................................................................................................AGGAACTAGTTCTGG............................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................ATAAAGTTTGTTCGTACCC........................................... 19 3 14 0.07 1 0 0 0 0 1 0 0
....................................................................................................................AGAGGGCCTATAGTGAGTA...................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0
...............................................................................................................................................................................AAACAAACGAAAGTTTATAAAG........................................................ 22 3 17 0.06 1 0 0 0 0 0 1 0
........................................................................................................GGTCGAAGTATCAGAGGGT.................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/23/2015 at 11:35 PM