ID:

dsi_29771

 Coordinate:

3r:4627379-4627516 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CACAGTTAAGAGCTGTTTTTGGTACATATTCGGAGCTTTGTTACAACAGGGTGAGTGCATCAGTTTCTCAAGTAAACTATACCTTCATAAGACTACTATACAACGTGAAACATTATAAAGTGTGAAAGATGGATTATTTTGAACAAAACTGCATAATCGAATATTTCATATTCTCTTATCCTGGGCAGGAGGCATGTACTTGCCCACAGCAGACAGTGGGCGCCTAGTGGTCGGCTTT
**************************************************.((((.((....))..))))...........(((..((((((.(((........)))...........(((((((((....((((((...............)))))).....))))))))).))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
................................GAGCTTTGTTACAACAGG............................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
............................................AACAGGCTGAGTGGATCA................................................................................................................................................................................ 18 2 1 1.00 1 0 1 0 0 0 0
..................TTCGTAGATATTCGGAG........................................................................................................................................................................................................... 17 2 11 0.27 3 0 0 3 0 0 0
.......................................................................................................................................................................................................TTGCCCGCAACAGAGAGTGG................... 20 3 4 0.25 1 0 0 0 1 0 0
.....................................................................................................................AAGTTTGAAAGATGGCTT....................................................................................................... 18 2 11 0.18 2 0 0 0 0 2 0
.....................................................................................................................AGGTGTGAAAGATGGTTT....................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1
....................................................................................................................................ATAATTTTGAACAAAA.......................................................................................... 16 1 20 0.10 2 0 0 0 2 0 0
...................TGGTAGATATTCGGAGG.......................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 1 0 0 0
............................................................................CTTTACCGTCGTAAGACT................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GTGTCAATTCTCGACAAAAACCATGTATAAGCCTCGAAACAATGTTGTCCCACTCACGTAGTCAAAGAGTTCATTTGATATGGAAGTATTCTGATGATATGTTGCACTTTGTAATATTTCACACTTTCTACCTAATAAAACTTGTTTTGACGTATTAGCTTATAAAGTATAAGAGAATAGGACCCGTCCTCCGTACATGAACGGGTGTCGTCTGTCACCCGCGGATCACCAGCCGAAA
**************************************************.((((.((....))..))))...........(((..((((((.(((........)))...........(((((((((....((((((...............)))))).....))))))))).))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
.....................................................TCACGTAGTCAAAGAGTTCATT................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................ATGGAAGTATTCTGATGATATGT........................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................ATGTTGCACTTTGTAATA.......................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................CGTAGTCAAAGAGTTCATT................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................TTGCACATTGTAATATT........................................................................................................................ 17 1 2 0.50 1 0 0 0 0 1 0 0 0
....................................AAAAAATGTTGCCCCAC......................................................................................................................................................................................... 17 2 13 0.38 5 0 1 0 0 0 4 0 0
...................................................................................................................................................................................................CATGAACGGCTGTCGTGCG........................ 19 3 12 0.25 3 0 0 0 0 0 0 0 3
................................................................................................................................................................AACAAAGTATAAAAGAATAGGAC....................................................... 23 3 4 0.25 1 0 0 0 0 0 0 1 0
....................................................................................AGTGTTCTGACGATATG......................................................................................................................................... 17 2 5 0.20 1 0 0 0 0 1 0 0 0
..............................................................................................................................TCTATCTAATAAAAGATGTTT........................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0 0
.....................................AACAATGTTGCCCCACA........................................................................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................GCGGGTGCCGTCTATCAC.................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................CACGGCTGTCGTTTGTCAC.................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:12 AM