ID:

dsi_2977

Coordinate:

3r:4707620-4707769 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-25.1	-24.9	-24.8

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

CAACCCGGAATTGTACTCGTTATCAAGCCCATTGGGACCGCATGGAACTGGTGAGTGATAGTTTAATTTAAATGCGATTTTAAATGATTTGTGAAAAGTTTATTTATTTATGGGTGCCTCCGAGTTAGTGTGATCTTTTTCTGATTTCATATTTTTGTACAAGTAGATGGTGCCTTCATTGATTTGAGGGACATTTGAATGTCCTTTTATGGTTGAGCTTAGAGCCTCCTCATGTTGTTTATATTGGCAG ************************************************...............(((((((((...........(((((.....)))))...((((((((..((((....((((..(((.((((.......)))).)))))))..))))..))))))))..((((((......)))))).)))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries
..................................................................................AATGATTTGTGAAAA.........................................................................................................................................................	15	0	2	0.50	1	1	0	0	0	0	0
.....................................................................AAATGCGATTTTAAA......................................................................................................................................................................	15	0	3	0.33	1	0	1	0	0	0	0
CAACCGGATATTGTACTCGTT.....................................................................................................................................................................................................................................	21	3	5	0.20	1	0	0	0	0	1	0
.............TACTCGTTATAAAGC..............................................................................................................................................................................................................................	15	1	7	0.14	1	0	0	1	0	0	0
...................................................TGGGTGATAGTTTAA........................................................................................................................................................................................	15	1	8	0.13	1	0	0	0	1	0	0
......................................................GTGATAGTTCGATTTAAA..................................................................................................................................................................................	18	2	11	0.09	1	0	0	1	0	0	0
.............................................................................TTTTAAATGACTTGTGATAAA........................................................................................................................................................	21	3	11	0.09	1	0	0	0	1	0	0
......................................................................................ATTTGTGGAAAGTTTA....................................................................................................................................................	16	1	16	0.06	1	0	1	0	0	0	0
.............................................................................................................................................................................CTTCATTGATCTTAGG.............................................................	16	2	20	0.05	1	0	0	0	0	0	1
................................................................................................................GGTTCCTCCGCGTTAGAGT.......................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................TGGACATTTGAATGT................................................	15	1	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

GTTGGGCCTTAACATGAGCAATAGTTCGGGTAACCCTGGCGTACCTTGACCACTCACTATCAAATTAAATTTACGCTAAAATTTACTAAACACTTTTCAAATAAATAAATACCCACGGAGGCTCAATCACACTAGAAAAAGACTAAAGTATAAAAACATGTTCATCTACCACGGAAGTAACTAAACTCCCTGTAAACTTACAGGAAAATACCAACTCGAATCTCGGAGGAGTACAACAAATATAACCGTC ************************************************...............(((((((((...........(((((.....)))))...((((((((..((((....((((..(((.((((.......)))).)))))))..))))..))))))))..((((((......)))))).)))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	O001 Testis	M053 female body	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
...................................................................................................................................................................AACTACCACGGAAGTC.......................................................................	16	2	20	8.80	176	176	0	0	0	0	0	0	0
...................................................................................................................................................................AACTACCACGGATGTCACT....................................................................	19	3	15	1.27	19	0	8	11	0	0	0	0	0
...GGGCCTTAACATGAGCAA.....................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
...................................................................................................................................................................AACTACCACGGATGTCACTAA..................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................AACTACCACGGAAGT........................................................................	15	1	9	0.33	3	0	1	2	0	0	0	0	0
.............................................................................................................................................................................................................AAATACCAACTCTGATC............................	17	2	18	0.28	5	2	0	3	0	0	0	0	0
...........................................................................................................................................AGACTAAAGTCTAAGAACAAGT.........................................................................................	22	3	4	0.25	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................TAAACTCCCGGTAAACTTA..................................................	19	1	5	0.20	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................ACCACGAAAGTAACT....................................................................	15	1	19	0.16	3	1	0	0	0	0	0	2	0
.............AGGAGCAATAGTGCGG.............................................................................................................................................................................................................................	16	2	20	0.15	3	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................GGAAAATAGCAACTC.................................	15	1	7	0.14	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................AAACTCCTTGTATACTTA..................................................	18	2	13	0.08	1	0	0	0	0	0	1	0	0
.......................................................................................................................................AAAAAGCCTAAAGTACAAA................................................................................................	19	2	16	0.06	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................ACACTCCTTGTATACTTACA................................................	20	3	19	0.05	1	0	0	0	0	0	1	0	0
.............CTGAGCAATAGTGCGG.............................................................................................................................................................................................................................	16	2	19	0.05	1	0	0	0	0	0	0	0	1
.................................................................................................................................................................TCAACTACCACGGATGT........................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................ATACCAACTCTGATCT...........................	16	2	20	0.05	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................AATACCAACTCTGATC............................	16	2	20	0.05	1	0	1	0	0	0	0	0	0

Generated: 04/24/2015 at 10:26 AM