ID:

dsi_29744

Coordinate:

3l:11543793-11543860 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCGTATAAAATTGAATGTGCTTGTTTTATGTATATCAAACATGGGTGCACGTATGTATATACGTCCCCCAGTCATACATAAAGTGTTAAATTTTGTAATTTCCGGCGTCTTTTTGAAGTGCTTTGAAGGTGTCAATGGCGCATTAATTTCAAGTGTTCAACAATATAT ************************************************.(((((((..((........)).)))))))((((((((((((....)))))..)))).))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..............................................................................................................TTTTGAAGTGCTTTGAAGGTG.....................................	21	0	1	1.00	1	1	0	0	0
................................................................................................................TTGAAGTGCTTTGAAGGTGTC...................................	21	0	1	1.00	1	1	0	0	0
.....................................................................................TTAGATTTTGTATTTTCCGGCA.............................................................	22	3	3	0.33	1	0	1	0	0
.................................................................................................ATGTCCGGCGTCTGTTTG.....................................................	18	2	13	0.08	1	0	0	1	0
.............................................................................................................TTTTTGAAGCGCTTTCACG........................................	19	3	20	0.05	1	0	0	0	1

Anti-sense strand reads

GGCATATTTTAACTTACACGAACAAAATACATATAGTTTGTACCCACGTGCATACATATATGCAGGGGGTCAGTATGTATTTCACAATTTAAAACATTAAAGGCCGCAGAAAAACTTCACGAAACTTCCACAGTTACCGCGTAATTAAAGTTCACAAGTTGTTATATA ************************************************.(((((((..((........)).)))))))((((((((((((....)))))..)))).))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M025 embryo	M024 male body	GSM343915 embryo
........................................................................................TTAAAACATTAAAGGCCGCAGAAAAACT....................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................TTACCGCGTAATTAAAGTTCACAAGT.........	26	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................ACCGCGTAATTAAAGTTCACAAGTTGT......	27	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................TTTAAAACATTAAAGGCC...............................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................AGATCTCAAGTTGTTATAT.	19	2	9	0.22	2	0	0	0	0	2	0	0
................................................................................................................................................TTATAGTTCACAAGT.........	15	1	19	0.16	3	0	0	0	3	0	0	0
................................................................................................................................................TTATAGTTCACAAGTT........	16	1	7	0.14	1	0	0	0	1	0	0	0
.............................................................................................................AAAAACTTCGCGAAA............................................	15	1	20	0.10	2	0	0	0	2	0	0	0
....................................................................................................................................................AGATCTCAAGTTGTTATATT	20	3	19	0.05	1	0	0	0	0	0	1	0
.......CTCAACTTACACGAACACA..............................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:30 AM