dsi_29738

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

ACAGTTGCTGCCGCCACCGCCGCCGCCACCACCACCCCCGCAGCAACAAAATCAACAGCAGCAACAACAACATCTACACTTTTCACAGCAACAACAACAACAACATCAGCAGCAGCAGCAACATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCTTCCAACTCTTCTCGCCTAGATGCCCACCATCAGCAGCACCACCAACAGCAGCACCACCACCAGCAACAA ************************************************......................................................(((((..(((((((.....(((((....))))).....)))))..))...))))).........................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body
....................................................................................................................................................................................TTCCAACCCTTCTCGCATGGA.................................................	21	3	3	0.33	1	1	0	0
.................................................................................................................................TTCGTGCACAGCCCAGCTTA.....................................................................................................	20	3	7	0.14	1	0	1	0
...................................................................................................ACAACATCAGCAGCAG.......................................................................................................................................	16	0	14	0.07	1	0	1	0
.....................................................................................CGGAAACAACAACAACAACATC...............................................................................................................................................	22	2	20	0.05	1	0	0	1
......................................................................................................ACATCAGCAGCAGCAGCA..................................................................................................................................	18	0	20	0.05	1	1	0	0

TGTCAACGACGGCGGTGGCGGCGGCGGTGGTGGTGGGGGCGTCGTTGTTTTAGTTGTCGTCGTTGTTGTTGTAGATGTGAAAAGTGTCGTTGTTGTTGTTGTTGTAGTCGTCGTCGTCGTTGTACCTGGTAGCAGGTGTCGGGACGAATCAGTTGACCAATTGAGTTGTAAAAGGTTGAGAAGGTTGAGAAGAGCGGATCTACGGGTGGTAGTCGTCGTGGTGGTTGTCGTCGTGGTGGTGGTCGTTGTT ************************************************......................................................(((((..(((((((.....(((((....))))).....)))))..))...))))).........................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M053 female body	GSM343915 embryo
.......................................................................................CGTTGTTGTTGTTTCTGGAGTC.............................................................................................................................................	22	3	20	1.40	28	0	21	0	6	0	0	1	0	0	0
...................GGCGGCGGTGGTGGTGGGGGC..................................................................................................................................................................................................................	21	0	2	1.00	2	2	0	0	0	0	0	0	0	0	0
....................GCGGCGGTGGTGGTGGGGGCG.................................................................................................................................................................................................................	21	0	2	1.00	2	2	0	0	0	0	0	0	0	0	0
......................................................................................TCGTTGTTGTTGTTTCTGGAGT..............................................................................................................................................	22	3	20	0.55	11	0	11	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CGTCATGGTGGTGGTCGTTGT.	21	1	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.................GCGGCGGCGGTGGTGGTGGGGGCG.................................................................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
................GGCGGCGGCGGTGGTGGTGGGGG...................................................................................................................................................................................................................	23	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
....................GCGGCGGTGGTGGTGGGGGC..................................................................................................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.................GCGGCGGCGGTGGTGGTGGGGGC..................................................................................................................................................................................................................	23	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...................GGCGGCGGTGGTGGTGGGGG...................................................................................................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
..................CGGCGGCGGTGGTGGTGGGGGC..................................................................................................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...............................................................TGTTGTTGTAGATGTATAGAGT.....................................................................................................................................................................	22	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................AGCGTATCTACGGGTG..........................................	16	1	3	0.33	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................TCATGGTGGTGGTCGTTG..	18	1	3	0.33	1	0	0	1	0	0	0	0	0	0	0
....................GCGGCGGTGGTGGAGGGGGCG.................................................................................................................................................................................................................	21	1	4	0.25	1	1	0	0	0	0	0	0	0	0	0
...................................................................................GTGTCGTTGTTGTTGTTTCTG..................................................................................................................................................	21	2	20	0.25	5	0	4	0	0	0	0	1	0	0	0
.....................................................................................................................CGTCGTACCTGCTAGCAG...................................................................................................................	18	2	5	0.20	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................ACGAATGAGTTGTCCAAT.........................................................................................	18	2	6	0.17	1	0	0	0	1	0	0	0	0	0	0
..................................................................................AGTGTCGTTGTTGTTGTTTCTG..................................................................................................................................................	22	2	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..................TGGCGGCGGTGGTGGTGGGGG...................................................................................................................................................................................................................	21	1	7	0.14	1	1	0	0	0	0	0	0	0	0	0
...................................................................GTTGCAGATGTGAGAAG......................................................................................................................................................................	17	2	8	0.13	1	0	0	0	0	0	0	1	0	0	0
............CGGTGGTGGCGGCGGTTGTGGTGT......................................................................................................................................................................................................................	24	3	16	0.13	2	2	0	0	0	0	0	0	0	0	0
.............................................................................TGAAGAGTGTCGTAGTTGGT.........................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................TTCGTGGTGGTTGTCGTCGTGGCT............	24	3	8	0.13	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................CGTTATTGTTGCTGTTGGAGT..............................................................................................................................................	21	3	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................AGGTGACGGGACGAA......................................................................................................	15	1	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGAGAAGCTTGAGA............................................................	15	1	12	0.08	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................GTGGTGGTTGTCGTCGTGGCTG...........	22	2	12	0.08	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................GGATGAGAAGGTTGCGA............................................................	17	2	13	0.08	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................TTGTTGTTGTTTCTGGAGTCGTC..........................................................................................................................................	23	3	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.................TCGGCGGGGGTGGTGGTGGGGC...................................................................................................................................................................................................................	22	3	17	0.06	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................TGTTGTTGTTTCTGGAGTCGTC..........................................................................................................................................	22	3	19	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................CGTCGTCGATGTACCTGGGG.......................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................GCCGCGGCGGTGGTGGT........................................................................................................................................................................................................................	17	1	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...................................................................................GCGTCGTTGTTGTTGTTGTTG..................................................................................................................................................	21	1	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................GTGGTGGTTGTAGTCCTG...............	18	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................TTGTCGTCGTTGTTGTTGT..................................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................CGTTGTTGTTGTTTTTGGAGT..............................................................................................................................................	21	2	20	0.05	1	0	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:7132748-7132997 +	dsi_29738	AC---AGTTGCTGCCGCCACCGCCGCCGCCACCACC---ACC---CCCGCAGCAA---------------------------------------------CAA---------------AATCAACAGCAG---------------------CAACAACAACATCTACACTTTTCACAGCAACAA-CAACA---------ACA------------------------A---------CATCAG---------CAGCAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCATC------------------A---------GCAG---CA---------------------------CCACCAA---CAGCAGCACCACCACCAGCAACAA
droSec2	scaffold_24:763523-763772 +		AC---AGTTGCTGCCGCCACCGCCGCCGCCACCACC---ACC---CCCGCAGCAA---------------------------------------------CAA---------------AATCAACAGCAG---------------------CAACAACAACATCTACACTTTTCACAGCAACAA-CAACA---------ACA------------------------A---------CATCAG---------CAGCAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAGCATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCATC------------------A---------GCAG---CA---------------------------CCACCAA---CAGCAGCACCACCACCAGCAACAA
dm3	chrX:7556482-7556734 +		AC---AGTTGCTGCCGCCACCGCCGCCGCCACCACC---ACC---CCCGCAGCAA---------------------------------------------CAA---------------CATCAACAGCAGCAA------------------CAACAACAACATCTACACTTTTCACAGCAACAG-CAACA---------ACA---------------------------------------A---------CATCAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCATCA---------------------GCAGCAGCAG---CA---------------------------CCACCAA---CAGCAGCACCAACACCAGCAACAA
droEre2	scaffold_4690:16473563-16473836 +		GC---AGTTGCTGCCGCCACCGCCGCCGCCGCCGCC---GCC---ACCACCA---------------CCACCCCCACCATCCC---------C---------------------------------------G------------------CAGCAACAACATCTACACTTTTCACAGCAACA-------------------------------------------------------GCAA---------CAGCAACAGCAA---CATGGACCATCGTCCACAGCGCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCACCACCAGCAGC------------AGCAGCAGCAG---CACCAC---------CAGCAGCAGCAGCACCACCAGCACCACCACCACCAGCAGCAGCAGCAG
droYak3	X:13762865-13763159 -	dya_1422	AC---AGTTGCTGCCGCCACCGCCGCCGCCGCCACC---ACC-----CGCAGCACCA-------CCAACAGCAGCACCACCCCTTT------C---------------------------------------G------------------CAGCAACAACATCTACACTTTTCACAGCAACAA-CAGCA---------ACA------------------------A---------CAACAGCAACAACATTTACAACAGCAA---CATGGACCATCGTCCACAGCGCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCAAACTCTTC---------TCGCCTAGATGCC------------------CACCACCACCAGCAGC------------AGCAGCAGCAC---CACCACCAACACCACCAGC---------------AG---CAGCAGCACCACCACCAGCAGCAG
droEug1	scf7180000409223:317823-318036 +		AC---AATTGCTGCCGCCACCACCGCCCC------------------CGCAACAG------------------------------------------------------------------------------------------------CAACAGCAACATCTACACTTTCCACAGCAACAA-C---------------------------------------------------ATCAA---------CAACAACAGCAA---CATGGACCATCGTCCACAGCCTTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------T------CTTC---------TCGCATAGATGCC------------------CACCATCA---------------------ACAGCAGCAA---CA---------------------------CCACCAA---CAACAGCAACACCACCAGCAAAAT
droBia1	scf7180000301715:130180-130447 -		AC---AATTGCTGCCGCCGCCGCCACCACCGCC------------CCCGCAGCAA---------------------------------------------------------------------------------------------------CAGCAACATCTACACTTTCCACAGCAGCAA-CAACA---------ACAACAGCAACAGCAGCAACTGCAACAACAGCAGCAGCAGCAG---------CAGCAACAGCAA---CATGGACCATCGTCCACAGCCTTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCACCA---------------------ACAGCAGCAG---CACCAC---------CAGC---------------AA---CAGCAGCAACACCACCAGCAGCCA
droTak1	scf7180000415381:772163-772403 +		AC---AATTGCTGCCGCCGCCGCCACCACCGTTGCC---CCC------CC---------------------------------------------------------------------------------------------------------AGCAACATCTACACTTTCCACAGCAACAA-CAGCA---------ACA------------------------G---------CAACAACAA------CAACAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCACCACCAGC---------------------AGCAA---CATCACCAG---CAACAGC---------------AG---CAGCAACACCACCACCAGCAACAT
droEle1	scf7180000491044:945640-945949 -		AC---AATTGCTGCCGCCGCCGCCGCCACCACCGCC---ACCACTCCCGCAGCAA---------------------------------------------CAA---------------CAACAACAACAACAACAACAGCAACAGACACATCAGCAGCAACATCTACACTTTTCACAGCAACAA-CAGCA---------ACA------------------------G---------CAACAACAGCAA---CATCAACAACAA---CATGGACCCTCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------CCGCCTAGATGCC------------------CACCACCACCAGCAGCACCAGCATCA---------GCAGCACCACCACCAG---CAGCAGC---------------AA---CAGCAACAGCACCACCAGCAGCAA
droRho1	scf7180000779479:304074-304359 -		AGCACAATTGCTGCCGCCACCGCCACCTCCACCACCGCCACCACTCCCGCAGCAA---------------------------------------------CAA---------------CA---GCAATCACAA------------------CAGCAGCAACATCTACACTTTCCACAGCAACAA-CAACA---------ACA------------------------A---------CAACAG---------CAGCAGCAGCAA---CATGGACCCTCGTCCACAGCACTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------CCGCCTAGATGCC------------------CACCACCACCACCAAC------------ACC---AACAG---CA---GCAGCAGCAGCAGC---A------GCACCTT---CACCAGCAACACCACCAGCAACAG
droFic1	scf7180000454045:1011991-1012303 +		AC---AACTGTTGTTGCCGCCGCCACCACCTCCACC---ACC---CCTGCAACAA---------------------------------------------CAACAACATCTC------CTC---CAACAACAA------------------CAACAGCAACATATAAACTTTCCACAGCAACAT-CAACA---------GCAACAACAACAACAGCAACCACAACAG---------CTAAAT---------CAACAGCAGCAA---CATGGACCTTCGTCCACAGCGCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCACCTCTTC---------CCGCCTAGATGCC------------------CACCACCACCAGCACCACCACCTCCACCAGCAGCAGCAG---CATC---------AACAGC---------------AG---CAGCAGCACCACCAGCAGCAGCAA
droKik1	scf7180000302621:77414-77658 +		GC---AGCAGCAGTAGCAGCGGCAGCAACAATAACA---CAC------CC-------------------------AACG----GTG------C---------GCAG------CAGCAGCATTTGCAGCAG---------------------CAGCAGCAGCAACAACGCGTTGC-TAGCAGCAACCAGCA---------ACA------------------------G---------TTGCAGCAGCAG---CAGCAGCATGAT---AATGGACCAACGTCCC----------------------------ATCATTTGCA----TCAATCA-----------TCAGTCTCTAATCAGC---------AAAGCAAAACAACGC--------------------AACA---------------------GC---AGCAG---CAGC---------A---------------CCAGCAG---CAGCAGCAACACCAAAAGCAGCAA
droAna3	scaffold_13117:394920-395205 +		GC---TGCTGCCGCCGCCCCCGCCCCCGCCTCCGCT---GCC---ACCCAGCCAGCACTTTGGCCCTCCGGCTGCCACGCCTCTTTATCCCCCGCCACAACAA---------------CAACAGCAACAACAA------------------CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CAGCAA---------CAGCAACAGCAA---CATGGACCCTCGTCCACCGCCTTGCTGAGCCAACTGGTTAACTCGACATTTTCCAACTCC---------------------ACCCCCTCTTCTTCCTCCACCCGCCTAGATGGA------------------AGCCTCT------------------C---------GCAG---CC---------------------------GCAGCCC---CCGCACCACCACCCGCAGCACCCA
droBip1	scf7180000396412:330690-330954 +		AT---TGTTGCCGCCACCTCCGCCTCCGCCTCCACT---GCC---TCCGTTGCCGCATTATGGCCCTCCGGCTGCCACGCCTCTTTATCCCCCGCC---------------------------ACAGTCA---------------------CACCAGCAA---------------CAACAACAA-CAACA---------ACA------------------------G---------CATCAG---------CAACAACAGCAA---CATGGACCCTCGTCCACCGCCTTGCTGAGCCAACTGGTTAATTCGACATTTTCCAACTCC---------------------ACCCCCTCTTCTTCCTCCACCCGCCTAGATGGA------------------A----------------------------------GCAG---C--------------------------------CAC---TCGCAGCCGCATCCTCAGCCCCCG
dp5	XL_group1e:11563224-11563437 +		AC---AGTTGCTGCCGCCACCGCCGCCGCCACCGCC---AAC---CTTGCAACAA---------------------------------------------CAA----------------------------------------------------------------------------------CAACA---------ACA------------------------A---------CACTAC---------CAACAACAGCAG---CACGGACCCTCGTCCACAGCGTTGCTCAGTCAATTGGTTAACTCCACTTTCTCCT------------------------------CCTCCTC---------TCGCCTAGATGCCGGATCCCATCCGCACCACCACCACC------------------A---------GCAG---CA---------------------------GCAGCCA---CAGTCGCACCATCAGCACCAGCAG
droPer2	scaffold_14:1017836-1018055 +		AC---AGTTGCTGCCGCCACCGCCGCCGCCACCGCC---AAC---CTTGCAACAA---------------------------------------------CAA---------------------------------------------------------------------------CAACAA-CAACA---------ACA------------------------A---------CACTAC---------CAACAACAGCAG---CACGGACCCTCGTCCACAGCGTTGCTCAGTCAATTGGTTAACTCCACTTTCTCCT------------------------------CCTCCTC---------TCGCCTAGATGCCGGATCCCATCCGCACCACCACCACC------------------A---------GCAG---CA---------------------------GCAGCCA---CAGTCGCACCATCAGCACCAGCAG
droWil2	scf2_1100000004921:1301073-1301319 +		AC---TTTACCAGCCACCACCACCACCACCACAGCA---CCA---CCTGCAACAG---------------------------------------------CAACCA------------CATCAGCAACAGCAG------------------CAGCAGCAGCAGCACCACCACCACCAACATCAT-CATCACCACCATCAGCAACAACAACAACA------------T---------GAGCCACAACAACAATTACAACAACAAACACAT----TATGTTCCACAATTGT------------------------ATTATCCAACGC---------------------------------------------ACTGGATGC-----------------------------------------------------AGCAA---CAGCAACAG---CAGCAGC---------------AG---CAGGTATCAAACAACGAGCAACAA
droVir3	scaffold_12970:3833190-3833463 +		AC---TGTTGCCGCCGCCACCGCCGCCTCCGCCACC---ACA------GCAGCAA---------------------------------------------CAA---------------CA---GCAACAACAA------------------CAACAGCAACAACAA------------CAACAA-CAACA------------------------------------ACAGCAACAACAACA------CTATCAACAGCAACAA---CATGGACCATCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCGC---------ACGCCTAGATGCCGCATCA------CAA---CACCAGCT---------------------CC---AGCAG---CA---------------------------GC---AG---CAGCAGCAGCAGCAACAGCCACAA
droMoj3	scaffold_6473:8333417-8333686 +		-C---AATTGTTGCCTCCACCGCCACCGCCACTGCCGCAGCC---CCAGCAACAA---------------------------------------------CAA---------------CAACAACAACAACAA------------------CAACAGCAACAACAACACTATCAACAACAACAA-CAGCA---------ACA------------------------G---------CAACAA---------CAACAGCAACAA---CATGGACCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCGC---------ACGCCTAGATGCCGCCACA------------CACCACCAACT------------------TC---AGCAG---------------------------------------------------CAACAGCAGCAGCAG
droGri2	scaffold_15203:10073638-10073926 -		AC---TGTTGCCGCCACCGCCGCCGCCGCTGCCGCC---GTC---ACAACAGCAGCAG-------CAGCAGCAGCAGCA--CTTTTCTGCACAG------------------------------CAACAACAA------------------CAACAACAACAACAACAATATCACCAACAGCAA-CAACA---------ACA------------------------A---------CAACAA---------CAGCAGCAGCAA---CATGGACCCTCGTCCACAGTGCTACTAAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCAC---------ACGCCTAGATGCCGCATCC------------CACCACCA---------------------ACACCAGCAG---CA---------------------------TCAGCC---------------------ACAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AC---AGTTGCTGCCGCCACCGCCGCCGCCACCACC---ACC---CCCGCAGCAA---------------------------------------------CAA---------------AATCAACAGCAG---------------------CAACAACAACATCTACACTTTTCACAGCAACAA-CAACA---------ACA------------------------A---------CATCAG---------CAGCAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCATC------------------A---------GCAG---CA---------------------------CCACCAA---CAGCAGCACCACCACCAGCAACAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................ACA------------------------A---------CATCAG---------CAGCAG......................................................................................................................................................................................................................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................A---------CATCAG---------CAGCAGCAGCA.................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

AC---AGTTGCTGCCGCCACCGCCGCCGCCACCACC---ACC---CCCGCAGCAA---------------------------------------------CAA---------------AATCAACAGCAG---------------------CAACAACAACATCTACACTTTTCACAGCAACAA-CAACA---------ACA------------------------A---------CATCAG---------CAGCAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAGCATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCATC------------------A---------GCAG---CA---------------------------CCACCAA---CAGCAGCACCACCACCAGCAACAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................CAGCATTTTCCAACTCT---------------------TCCAAC......................................................................................................................................................	23	1	1.00	1	0	1	0	0

dm3

AC---AGTTGCTGCCGCCACCGCCGCCGCCACCACC---ACC---CCCGCAGCAA---------------------------------------------CAA---------------CATCAACAGCAGCAA------------------CAACAACAACATCTACACTTTTCACAGCAACAG-CAACA---------ACA---------------------------------------A---------CATCAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCATCA---------------------GCAGCAGCAG---CA---------------------------CCACCAA---CAGCAGCACCAACACCAGCAACAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................TAGTCAACTGGTTAACTCAAC..............................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AGCAA---CATGGACCATCGTT...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................ATTTTCCAACTCT---------------------TCCAACTC....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CAG-CAACA---------ACA---------------------------------------A---------CATCAGCAGCAA---CA...........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................A---------CATCAGCAGCAA---CATGG........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCAACTCTTC---------TCGCCTG.................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................ACCATCA---------------------GCAGCAGCAG---CA---------------------------..................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CAGCAGCAA------------------CAACAACAACAT....................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AGCAACAG-CAACA---------ACA---------------------------------------A---------C...........................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ACAGCAACAG-CAACA---------ACA---------------------------------------A---------CA..........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................ACCATCA---------------------GCAGCAGCAG---C..............................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................ACAGCAGCAA------------------CAACAACAA.......................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AACAGCAGCAA------------------CAACAACAACA.....................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GC---AGTTGCTGCCGCCACCGCCGCCGCCGCCGCC---GCC---ACCACCA---------------CCACCCCCACCATCCC---------C---------------------------------------G------------------CAGCAACAACATCTACACTTTTCACAGCAACA-------------------------------------------------------GCAA---------CAGCAACAGCAA---CATGGACCATCGTCCACAGCGCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCACCACCAGCAGC------------AGCAGCAGCAG---CACCAC---------CAGCAGCAGCAGCACCACCAGCACCACCACCACCAGCAGCAGCAGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG---CACCAC---------CAGCAGCAGCAGCA..................................	27	8	0.13	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CACCAC---------CAGCAGCAGCAGCA..................................	22	17	0.06	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................ACCACCACCAGCAGC------------AGCAGC.......................................................................	21	17	0.06	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCACCAGCAGCAGCAGC..	21	17	0.06	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGC------------AGCAGCAGCAG---CA.............................................................	23	20	0.05	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CCACCAGCAGC------------AGCAGCAGCA...................................................................	21	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGC------------AGCAGCAGCA...................................................................	20	20	0.05	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACCAGCAGCAGCAGC..	19	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CACCACCAGCAGC------------AGCAGC.......................................................................	19	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CACCAC---------CAGCAGCA........................................	20	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGC------------AGCAGCAGCAG---...............................................................	20	20	0.05	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAC---------CAGCAGCAGCAGC...................................	19	20	0.05	1	1	0	0	0	0	0	0
...............GCCACCGCCGCCGCCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0

droYak3

AC---AGTTGCTGCCGCCACCGCCGCCGCCGCCACC---ACC-----CGCAGCACCA-------CCAACAGCAGCACCACCCCTTT------C---------------------------------------G------------------CAGCAACAACATCTACACTTTTCACAGCAACAA-CAGCA---------ACA------------------------A---------CAACAGCAACAACATTTACAACAGCAA---CATGGACCATCGTCCACAGCGCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCAAACTCTTC---------TCGCCTAGATGCC------------------CACCACCACCAGCAGC------------AGCAGCAGCAC---CACCACCAACACCACCAGC---------------AG---CAGCAGCACCACCACCAGCAGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCACCACCACCAGCAGCA.	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................A-CAGCA---------ACA------------------------A---------CAACAGCAACAACA.............................................................................................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCACCAGC---------------AG---CAG.....................	18	13	0.08	1	0	0	0	0	1	0	0	0	0	0	0

droEug1

AC---AATTGCTGCCGCCACCACCGCCCC------------------CGCAACAG------------------------------------------------------------------------------------------------CAACAGCAACATCTACACTTTCCACAGCAACAA-C---------------------------------------------------ATCAA---------CAACAACAGCAA---CATGGACCATCGTCCACAGCCTTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------T------CTTC---------TCGCATAGATGCC------------------CACCATCA---------------------ACAGCAGCAA---CA---------------------------CCACCAA---CAACAGCAACACCACCAGCAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AC---AATTGCTGCCGCCGCCGCCACCACCGCC------------CCCGCAGCAA---------------------------------------------------------------------------------------------------CAGCAACATCTACACTTTCCACAGCAGCAA-CAACA---------ACAACAGCAACAGCAGCAACTGCAACAACAGCAGCAGCAGCAG---------CAGCAACAGCAA---CATGGACCATCGTCCACAGCCTTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCACCA---------------------ACAGCAGCAG---CACCAC---------CAGC---------------AA---CAGCAGCAACACCACCAGCAGCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AC---AATTGCTGCCGCCGCCGCCACCACCGTTGCC---CCC------CC---------------------------------------------------------------------------------------------------------AGCAACATCTACACTTTCCACAGCAACAA-CAGCA---------ACA------------------------G---------CAACAACAA------CAACAGCAGCAA---CATGGACCATCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------TCGCCTAGATGCC------------------CACCACCACCAGC---------------------AGCAA---CATCACCAG---CAACAGC---------------AG---CAGCAACACCACCACCAGCAACAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AC---AATTGCTGCCGCCGCCGCCGCCACCACCGCC---ACCACTCCCGCAGCAA---------------------------------------------CAA---------------CAACAACAACAACAACAACAGCAACAGACACATCAGCAGCAACATCTACACTTTTCACAGCAACAA-CAGCA---------ACA------------------------G---------CAACAACAGCAA---CATCAACAACAA---CATGGACCCTCGTCCACAGCCCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------CCGCCTAGATGCC------------------CACCACCACCAGCAGCACCAGCATCA---------GCAGCACCACCACCAG---CAGCAGC---------------AA---CAGCAACAGCACCACCAGCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCACAATTGCTGCCGCCACCGCCACCTCCACCACCGCCACCACTCCCGCAGCAA---------------------------------------------CAA---------------CA---GCAATCACAA------------------CAGCAGCAACATCTACACTTTCCACAGCAACAA-CAACA---------ACA------------------------A---------CAACAG---------CAGCAGCAGCAA---CATGGACCCTCGTCCACAGCACTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCAACTCTTC---------CCGCCTAGATGCC------------------CACCACCACCACCAAC------------ACC---AACAG---CA---GCAGCAGCAGCAGC---A------GCACCTT---CACCAGCAACACCACCAGCAACAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AC---AACTGTTGTTGCCGCCGCCACCACCTCCACC---ACC---CCTGCAACAA---------------------------------------------CAACAACATCTC------CTC---CAACAACAA------------------CAACAGCAACATATAAACTTTCCACAGCAACAT-CAACA---------GCAACAACAACAACAGCAACCACAACAG---------CTAAAT---------CAACAGCAGCAA---CATGGACCTTCGTCCACAGCGCTGCTTAGTCAACTGGTTAACTCAACATTTTCCAACTCT---------------------TCCACCTCTTC---------CCGCCTAGATGCC------------------CACCACCACCAGCACCACCACCTCCACCAGCAGCAGCAG---CATC---------AACAGC---------------AG---CAGCAGCACCACCAGCAGCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GC---AGCAGCAGTAGCAGCGGCAGCAACAATAACA---CAC------CC-------------------------AACG----GTG------C---------GCAG------CAGCAGCATTTGCAGCAG---------------------CAGCAGCAGCAACAACGCGTTGC-TAGCAGCAACCAGCA---------ACA------------------------G---------TTGCAGCAGCAG---CAGCAGCATGAT---AATGGACCAACGTCCC----------------------------ATCATTTGCA----TCAATCA-----------TCAGTCTCTAATCAGC---------AAAGCAAAACAACGC--------------------AACA---------------------GC---AGCAG---CAGC---------A---------------CCAGCAG---CAGCAGCAACACCAAAAGCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GC---TGCTGCCGCCGCCCCCGCCCCCGCCTCCGCT---GCC---ACCCAGCCAGCACTTTGGCCCTCCGGCTGCCACGCCTCTTTATCCCCCGCCACAACAA---------------CAACAGCAACAACAA------------------CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CAGCAA---------CAGCAACAGCAA---CATGGACCCTCGTCCACCGCCTTGCTGAGCCAACTGGTTAACTCGACATTTTCCAACTCC---------------------ACCCCCTCTTCTTCCTCCACCCGCCTAGATGGA------------------AGCCTCT------------------C---------GCAG---CC---------------------------GCAGCCC---CCGCACCACCACCCGCAGCACCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................AA---------------CAACAGCAACAACAA------------------CAA---------------------CAGCAGCA................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
................................................................................................ACAACAA---------------CAACAGCAACAACAA------------------CAA---------------------CAGC....................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CA.........................................................................................................................................................................................................................................................................	23	20	0.35	7	1	3	0	0	0	3
.......................................................................................................................................................CAA---------------------CAGCAGCAG-CAACA---------GC..............................................................................................................................................................................................................................................................................................................	19	20	0.25	5	1	4	0	0	0	0
...................................................................................................................................AA------------------CAA---------------------CAGCAGCAG-CAACA---------GC..............................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	4	0	0	1	0
.......................................................................................................................................................CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CAGCAA---------C...........................................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0
........................................................................................................................................................AA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CAGCAA---------............................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0
...................................................................................................................................AA------------------CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CA.........................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	2
................................................................................................................................AACAA------------------CAA---------------------CAGCAGCAG-CA............................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
...................................................................................................................................AA------------------CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------C..........................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	2
..................................................................................................................................CAA------------------CAA---------------------CAGCAGCAG-CAACA---------GC..............................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	1
....................................................................................................................................A------------------CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------CAGC.......................................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................GCAA---------CAGCAACAGCAA---CAT..........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
...................................................................................................................................AA------------------CAA---------------------CAGCAGCAG-CAACA---------................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................CAACA---------GCA------------------------A---------CAGCAA---------CAGCAACAG...................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
................................................................................................................................AACAA------------------CAA---------------------CAGCAGCAG-CAA...........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
...........................................................................................................................GCAACAACAA------------------CAA---------------------CAGCAGC.................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................AACA---------GCA------------------------A---------CAGCAA---------CAGCAACAGC..................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................ACAA------------------CAA---------------------CAGCAGCAG-CAACA---------................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................AGCAGCAG-CAACA---------GCA------------------------A---------C..........................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------.....................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................CAGCAACAACAA------------------CAA---------------------CAGCAGC.................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................AGCAACAACAA------------------CAA---------------------CAGC....................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
....................................................................................................CAA---------------CAACAGCAACAACAA------------------CAA---------------------C.......................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................CAA------------------CAA---------------------CAGCAGCAG-CAACA---------................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................A------------------CAA---------------------CAGCAGCAG-CAACA---------................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0
..................................................................................................................................CAA------------------CAA---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------C..........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................AGCAACAACAA------------------CAA---------------------CAGCAGC.................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
............................................................................................................................CAACAACAA------------------CAA---------------------CAGCAGCAG-CA............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................A---------------------CAGCAGCAG-CAACA---------GCA------------------------A---------C..........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

AT---TGTTGCCGCCACCTCCGCCTCCGCCTCCACT---GCC---TCCGTTGCCGCATTATGGCCCTCCGGCTGCCACGCCTCTTTATCCCCCGCC---------------------------ACAGTCA---------------------CACCAGCAA---------------CAACAACAA-CAACA---------ACA------------------------G---------CATCAG---------CAACAACAGCAA---CATGGACCCTCGTCCACCGCCTTGCTGAGCCAACTGGTTAATTCGACATTTTCCAACTCC---------------------ACCCCCTCTTCTTCCTCCACCCGCCTAGATGGA------------------A----------------------------------GCAG---C--------------------------------CAC---TCGCAGCCGCATCCTCAGCCCCCG	Size	Hit Count	Total Norm	Total
No Reads

dp5

AC---AGTTGCTGCCGCCACCGCCGCCGCCACCGCC---AAC---CTTGCAACAA---------------------------------------------CAA----------------------------------------------------------------------------------CAACA---------ACA------------------------A---------CACTAC---------CAACAACAGCAG---CACGGACCCTCGTCCACAGCGTTGCTCAGTCAATTGGTTAACTCCACTTTCTCCT------------------------------CCTCCTC---------TCGCCTAGATGCCGGATCCCATCCGCACCACCACCACC------------------A---------GCAG---CA---------------------------GCAGCCA---CAGTCGCACCATCAGCACCAGCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA---------------------------GCAGCCA---CAGTCGCACC..............	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CACC------------------A---------GCAG---CA---------------------------GCAGCCA---C.......................	19	9	0.11	1	0	0	0	0	1	0	0	0	0	0
.................................................CAACAA---------------------------------------------CAA----------------------------------------------------------------------------------CAACA---------ACA------------------------A---------CAC........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

AC---AGTTGCTGCCGCCACCGCCGCCGCCACCGCC---AAC---CTTGCAACAA---------------------------------------------CAA---------------------------------------------------------------------------CAACAA-CAACA---------ACA------------------------A---------CACTAC---------CAACAACAGCAG---CACGGACCCTCGTCCACAGCGTTGCTCAGTCAATTGGTTAACTCCACTTTCTCCT------------------------------CCTCCTC---------TCGCCTAGATGCCGGATCCCATCCGCACCACCACCACC------------------A---------GCAG---CA---------------------------GCAGCCA---CAGTCGCACCATCAGCACCAGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................CACC------------------A---------GCAG---CA---------------------------GCAGCCA---CAGTCGCAC...............	27	1	1.00	1	1	0	0	0	0	0
.................................................CAACAA---------------------------------------------CAA---------------------------------------------------------------------------CAACAA-CAACA---------................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

droWil2

AC---TTTACCAGCCACCACCACCACCACCACAGCA---CCA---CCTGCAACAG---------------------------------------------CAACCA------------CATCAGCAACAGCAG------------------CAGCAGCAGCAGCACCACCACCACCAACATCAT-CATCACCACCATCAGCAACAACAACAACA------------T---------GAGCCACAACAACAATTACAACAACAAACACAT----TATGTTCCACAATTGT------------------------ATTATCCAACGC---------------------------------------------ACTGGATGC-----------------------------------------------------AGCAA---CAGCAACAG---CAGCAGC---------------AG---CAGGTATCAAACAACGAGCAACAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................AACCA------------CATCAGCAACAGCAG------------------CAGCAG..........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---CAGCAGC---------------AG---CAGGTA..................	21	2	1.00	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAGCAACAG---CAGCAGC---------------AG---CA......................	21	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................GCAGCAGCAGCACCACCACC..........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.........................................................................................................................CAGCAACAGCAG------------------CAGCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................AG------------------CAGCAGCAGCAGCACCACCAC...........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................AACAACAATTACAACAACA.................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.............................................................................................................................AACAGCAG------------------CAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

droVir3

AC---TGTTGCCGCCGCCACCGCCGCCTCCGCCACC---ACA------GCAGCAA---------------------------------------------CAA---------------CA---GCAACAACAA------------------CAACAGCAACAACAA------------CAACAA-CAACA------------------------------------ACAGCAACAACAACA------CTATCAACAGCAACAA---CATGGACCATCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCGC---------ACGCCTAGATGCCGCATCA------CAA---CACCAGCT---------------------CC---AGCAG---CA---------------------------GC---AG---CAGCAGCAGCAGCAACAGCCACAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................A---CACCAGCT---------------------CC---AGCAG---CA---------------------------GC---.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACA------CTATCAACAGCAACAA---.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAACAGCAACAA---CATGGAC......................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCT---------------------CC---AGCAG---CA---------------------------GC---AG---CA......................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCCACA.	21	10	0.20	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AACA------------------------------------ACAGCAACAACAACA------C...............................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ACAA------------CAACAA-CAACA------------------------------------ACAGCAACAACAA........................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CAACAA-CAACA------------------------------------ACAGCAACAAC..........................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................A---GCAACAACAA------------------CAACAGCAACA.....................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAACAACAA------------CAACAA-CAACA------------------------------------.....................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ACA------GCAGCAA---------------------------------------------CAA---------------CA---GCAACA......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAGCAGCAACAGCCA...	22	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACAACAA------------------CAACAGCAACAA....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------CC---AGCAG---CA---------------------------GC---AG---CAGCA...................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAG......	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................A------GCAGCAA---------------------------------------------CAA---------------CA---GCAACAACA...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA---------------------------GC---AG---CAGCAGCAGCAGCAACAG......	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------GC---AG---CAGCAGCAGCAGCAA.........	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CC---AGCAG---CA---------------------------GC---AG---CAGCAGCA................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------GC---AG---CAGCAGCAGCAGCAAC........	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCCA...	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CAA---------------CA---GCAACAACAA------------------CAACAGCA........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CAA------------CAACAA-CAACA------------------------------------ACAGC................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CC---AGCAG---CA---------------------------GC---AG---CAGC....................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCAA---------------------------------------------CAA---------------CA---GCAACAACAA------------------CA..............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAGCAGCAACAGCC....	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CC---AGCAG---CA---------------------------GC---AG---CAGCAGC.................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................AA------------CAACAA-CAACA------------------------------------ACAGCAAC.............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................A-CAACA------------------------------------ACAGCAACAACAACA------................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................A---GCAACAACAA------------------CAACAGCAA.......................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CT---------------------CC---AGCAG---CA---------------------------GC---AG---CAGCAGC.................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GCAACAACAA------------------CAACAGCAACAACAA------------.....................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AA---------------CA---GCAACAACAA------------------CAACA...........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................A---------------CA---GCAACAACAA------------------CAACAGCAACA.....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CT---------------------CC---AGCAG---CA---------------------------GC---AG---CAGC....................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-C---AATTGTTGCCTCCACCGCCACCGCCACTGCCGCAGCC---CCAGCAACAA---------------------------------------------CAA---------------CAACAACAACAACAA------------------CAACAGCAACAACAACACTATCAACAACAACAA-CAGCA---------ACA------------------------G---------CAACAA---------CAACAGCAACAA---CATGGACCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCGC---------ACGCCTAGATGCCGCCACA------------CACCACCAACT------------------TC---AGCAG---------------------------------------------------CAACAGCAGCAGCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................GGTTAACTCAACTTTCTCACATG...................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................T------------------TC---AGCAG---------------------------------------------------CAACAGCAGCAGC..	21	7	0.14	1	0	0	0	0	1	0
.........................................................................................................................................................................TATCAACAACAACAA-CAGCA---------................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................................................CAACAACAA-CAGCA---------ACA------------------------G---------CA.........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAG---------------------------------------------------CAACAGCAGCAGC..	19	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................ATCAACAACAACAA-CAGCA---------ACA------------------------.....................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................CAA-CAGCA---------ACA------------------------G---------CAACAA---------CAACAGC.....................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................GCA---------ACA------------------------G---------CAACAA---------CAACAGCA....................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................A---------ACA------------------------G---------CAACAA---------CAACAGCAACA.................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droGri2

AC---TGTTGCCGCCACCGCCGCCGCCGCTGCCGCC---GTC---ACAACAGCAGCAG-------CAGCAGCAGCAGCA--CTTTTCTGCACAG------------------------------CAACAACAA------------------CAACAACAACAACAACAATATCACCAACAGCAA-CAACA---------ACA------------------------A---------CAACAA---------CAGCAGCAGCAA---CATGGACCCTCGTCCACAGTGCTACTAAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCAC---------ACGCCTAGATGCCGCATCC------------CACCACCA---------------------ACACCAGCAG---CA---------------------------TCAGCC---------------------ACAGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........TGCCGCCACCGCCGCCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	1	0
...................CCGCCGCCGCTGCCGCC---G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	1	0
..............................................................................................................................................................................CCAACAGCAA-CAACA---------ACA------------------------A---------CAACAA---------............................................................................................................................................................................................................................................................	25	20	0.05	1	1	0

dsi_29738

x:7132798-7132947 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads