dsi_29732

Name	Class	Family	Strand
Hoana5	DNA	hAT-Ac	-

TGAAGTTTTTACATTTCTACTGCGCATCAAAGTAGAAAAGTGCATAAATTGTAAGTATAAATTAATTTTTCATATTTTTTAATAGAATTATTAATAGCATATTGCAAATTTATTGTGACTTGCTGTTGGTGTTGGCTGGCGTTGTGGAAGACGTGGATCTGAAATGTAAGTCTTGAACTCCCCAATAAGGCTTGCACGGT ************************************************................((((((((........(((...(((((((((((..((((((.....))))))..)))))))))))....)))....))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902008 ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR902009 testis	M025 embryo	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
...................................................................................................................................TTGGCTGGCGTTGTGGAAGAC................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................GAAGACGTGGATCTGAAATGT.................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................CTGAAATGTAAGTCTTGAACT.....................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................CGTTGTGGAGGACGTGGATC.........................................	20	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TTGCTGTTGGTGTTGGCTGGC............................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................GCTGGCGTTGTGGAAGACGTG.............................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTGCTGTTGGTGTTGGCT...............................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTGCTGTTGGTGTTGGCTGGCG...........................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................TTGGTGTTGGCTGGCGTTGTGGAAG..................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TTGTGGAAGACGTGGATCTGA......................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................CGTTGTGGAAGACGTGGATCTG.......................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................CTTGAACTCCCCAATAAGGCT........	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................TTGAACTCCCCAATAAGGCTTG......	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................AGGTTTATTGTGACTTGCTGT..........................................................................	21	2	2	0.50	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................TATTGCAAATTTATTGTGACT................................................................................	21	0	3	0.33	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................ATTGCAAATTTATTGTGACT................................................................................	20	0	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................AGGTTTATTGTGACTTGCTGC..........................................................................	21	3	5	0.20	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................TAAGAGCATATTGCAAACTGAT.......................................................................................	22	3	7	0.14	1	0	0	0	0	0	0	0	1	0	0
.................................................TGTAAGTATGAACTAAT......................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................GTAAGTATGAACTAATT.....................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

ACTTCAAAAATGTAAAGATGACGCGTAGTTTCATCTTTTCACGTATTTAACATTCATATTTAATTAAAAAGTATAAAAAATTATCTTAATAATTATCGTATAACGTTTAAATAACACTGAACGACAACCACAACCGACCGCAACACCTTCTGCACCTAGACTTTACATTCAGAACTTGAGGGGTTATTCCGAACGTGCCA ************************************************................((((((((........(((...(((((((((((..((((((.....))))))..)))))))))))....)))....))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
......................................................................................................................................................TGCACCTAGACTTTACATTCA.............................	21	0	1	1.00	1	0	1	0	0
..............................................................................................................................................ACACCTTCTGCACCTAGACTT.....................................	21	0	1	1.00	1	1	0	0	0
..................................................................................................................................................................................AGGGGTTATTCCGAACGTGCC.	21	0	1	1.00	1	0	0	1	0
........................................................................................................................................................................TCAGAACTTGAGGGGTTATTC...........	21	0	1	1.00	1	0	1	0	0
............TAAAGATGACGCGTAGTTTC........................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0
................................................................................................................................................ACCTTCTGCACCTAGACTTTA...................................	21	0	1	1.00	1	1	0	0	0
..........TGTGGAGATGACGGGTAGTTT.........................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0
......AAAATCTAAAGATGACGAGTAATT..........................................................................................................................................................................	24	3	2	0.50	1	0	0	0	1
.........ATGTAACGGTGACGCGT..............................................................................................................................................................................	17	2	14	0.07	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:452501-452700 -	dsi_29732	TGAAGTTTTTACATTTCTA-------CTGCGCATCAAAGTAGAAAAG-TGCA--------TAAATTGTAAGTATAAAT--TAATTTT--TC----ATATTTT-TTAATAGA--------ATTATTAATAGCATATTGCAAATTT--------ATTGTGACTTGCTGTTGGTGTTGGCTGGCGT--TGTGGA----A--GACGTGGA---------------------TCTGAAA--TGTAAGTCTTG------------AACTCCCCAATAA--------G------------GCTT------GCACGGT
droSec2	scaffold_10:386428-386633 -		TGATGTTTTTACATTTCTA-------CTGCGCATCAAAGTAGAAAAG-TGCA--------TAAATTGTAAGTATAAAT--TAATTTT--TT----ATATTTT-TTAATAGA--------ATTTCTAATAGCATATTGCAAATTT--------ATTGTGAATTGCTGTTGGTTTTGGCTGGCGT--TGTGGA----A--GACGTGGA---------------TAAATATCTGAAA--TGTAAGTCTTG------------AACTCCCGAATAA--------G------------GGTT------GCACGGT
dm3	chrX:20800398-20800573 -		C-----------ATCTCTA-------CTGCGCATTGGAGGAGA------------------AAATTGTAAGTATAAAT--TAATTTT--CC----ATATTTT-CTAATACA--------ATTATTTAGAGCATATTGCAAATTT--------ATTGTGACTTGCTGGTTGGGTTGGCTGGCGT--CGTGGA----A--GACAAGGA---------------TAAATATCTGAAA--TCTTAGTTTTC------------AATTCCCGTCTAA--------G----------------------------G
droEre2	scaffold_4929:9913829-9913921 -		TTAAGTTTTTGAATTTCTA-------CATCACATCAAAAAA----AT-TACA-----A-AAAAATTGAAA--AAAAAA--AAAATTG--TA----A---TTTGAA------------------------------TGCAGATTT--------TTAGAGAA--------------------------------------------------------------------------------------------------------------------------------------------------T--T
droYak3	2R:15879993-15880120 +		TT-------------TGTA-------CTGCTCATCAAAGTCGAGAAG-TGTACTGCTTGGAAAATTCCAGGCTAGGAA--AACAATT--TG----ATATTTT-TAGATGCA--------GTTCGCAATAGAATGTTCGAAT-AT--------TTAGCTGTTTGTCATTGAAGT---------------------------------------------------------------------------------------------------------------------------------------CG
droEug1	scf7180000409632:32473-32717 -		CGATGTTTTTCCATTTCTA-------AGGTACATTGGGGAA----GA-TTGA--------CGAATTGTAAGAACATGTATC---------ACTTAA---TTTAATGGCA-ACGCTTTTAAACGTTAGCTTAATAAT---ACTTTAGCGATCCG--GCAGCTTCGTGCTATCGTCGACCGTTGT--CGATAAGCTCC--TCTATGAAAATATACTTATATAGTAGAGTTTGGGAT--AGTAAGTATAGTTGGGATACTACAATATCC--------AAAATAACTAT----------TA---ATTTCTTTGG
droBia1	scf7180000297399:8264-8472 +		CGATGTTTTTCCATCTCTA-------ACGCGCATCAAGAAGGGAAGA-CGTG--------AAAATTGTAAGTAGATTTAA------ATTAAGTTA----TTTC-TGATA-A--------ATTACTTATGTTATGTTGCAAACT---------A--GTGTTCTGTTGGTGGTGTTGGCTGAGGT--AGTGGAGTGGA--GGCATGGA---------------GAGATATCTGAAA--CGTAAGTATTA------------TTA--ACAT----AAAAGCTG-------ACAAATCTTT------GCAT--T
droTak1	scf7180000415653:609749-609839 -		CAAACTTCTTACATTTTTT-------TTGTGTTTCCAAATAGAAAAA-GACG----------CCTTCAAT-TAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG------------TTA--TTTT----AAATCTTC-------AAGGATTTTT------GAAT--A
droEle1	scf7180000488233:19523-19723 +		CGATGTTT-TCCATTTCTAG------CTTCGCATAAAACAAGGAAAA-CGTG--------TAAATTGTAAGTACACTTGT------ATAAAATTG----AGTT-TTATA-G--------CTTACTTATGTTATGTTACAAATT---------A--GTATTCTGTTGGTGGTGTTGGCTGAGGT--AGTGGAGTGGA--GGCATGGA---------------CAAATA----AAATTAGTAATTAATA------------TTA--ATAT----CAAAGCTT-------A--------T------GAAATGT
droRho1	scf7180000765601:8711-8914 +		C----------CATCTCTAA------CTGCGCATCTGAGGAAGAAAA-CGTG--------T-AATTGTAAGTAAATTTGT------ATTCATTTA----TTTT-TTATA-A--------ATTACTCATATTTTGTTTTATATT---------A--GTGTTCTGTTGGTGGTGCTGGATGAAGT--TGTGGAGTGGACGGTCATGGA---------------CAGATACCTGAAA--CGTAAGTAATG------------TTA--ATAT----AAAAGCTG----GTGAAATATGTGT------GCAT--C
droFic1	scf7180000453345:4859-5074 +		CGATGTTTTTCCATCTCTAATATCTAAGGCGCAAAAGGGAA----GA-TTGA--------CACATTGTAAGTACAAATATC---------ATTTAA---TTTTATTATA-A--------ATTACTAACAGAATATTGTTATTTT----------TAATACTTGTTGGTGGTGTTGGCGTGAGT--GGTGGAAATAA--ATCATGGA---------------CAGATTTTTAAAA--AGTAAGTATTA------------AAT--ACATATCA--GAATTT---TT----------TTGTATTTACATAAA
droKik1	scf7180000302704:2642-2848 +		CGATGTTTTTCCATCTCTA-------AGGCACAAAGAGGAA----GACCAGG--------CCAATTGTAAGTACATTTATC---------ATTTAA---TCTCATTATA-A--------ATTATTAACAGAATATTGTTATTTT--------AGTTATACTTGTTGGTGGTGTTGGCGGGAGTGTGGTGGTACTTT--AGCATGGA---------------CAGGTTTTTGAAA--AGTAAGTACTA------------AATATCC--------GAATTTATCTT----------CC------GTATGTT
droAna3	scaffold_3805:1803-2012 +		CGATGTTTAT-CATCTCTA-------ACGAGCATCAAGCAGGGAAGA-CGTG--------AAAATTGTAAGTAGATTTAA------ATTAAGTTA----TTTC-TGATA-A--------ATTACTAATGTTATGTTGCAAACT---------A--GTGTTCTGTTGGTGGTGTTGGCTGAGGT--AGTGGAGTGGA--GGCATGGA---------------GAGATATCTGAAA--CGTAAGTATTA------------TTA--ACAT----AAAAGCTG-------AGGAAACTTT------GCATTTA
droBip1	scf7180000395327:14523-14742 +		CGATGTTTTTCCATCTCTA-------AAGCACTTTGAGGAAGATTGA-CGAA--------TAACTTGTAAGTATAT----CATTTTATTACATTA----TTTCATTATA-T--------ATTACTAACAGAATATTTTAAATTT--------AGTGATATTTGTTGGTGGTGTTGGCGTGAGTGCGGAGGCGATTA--GACATGGA---------------CAGATTTTTGAAA--AGTAAGTATTA------------AAA--AGCC----AAGATTTT----ATCACGAATTTAT------GCAC--G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGAAGTTTTTACATTTCTA-------CTGCGCATCAAAGTAGAAAAG-TGCA--------TAAATTGTAAGTATAAAT--TAATTTT--TC----ATATTTT-TTAATAGA--------ATTATTAATAGCATATTGCAAATTT--------ATTGTGACTTGCTGTTGGTGTTGGCTGGCGT--TGTGGA----A--GACGTGGA---------------------TCTGAAA--TGTAAGTCTTG------------AACTCCCCAATAA--------G------------GCTT------GCACGGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................TTGGCTGGCGT--TGTGGA----A--GAC.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................GA----A--GACGTGGA---------------------TCTGAAA--TGT.......................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CTGAAA--TGTAAGTCTTG------------AACT...............................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TTGCTGTTGGTGTTGGCTGGC.................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................GCTGGCGT--TGTGGA----A--GACGTG..........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................CTTGCTGTTGGTGTTGGCT....................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................CTTGCTGTTGGTGTTGGCTGGCG................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTGGTGTTGGCTGGCGT--TGTGGA----A--G...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................T--TGTGGA----A--GACGTGGA---------------------TCTGA..............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................CGT--TGTGGA----A--GACGTGGA---------------------TCTG...............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................CTTG------------AACTCCCCAATAA--------G------------GCT..............	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTG------------AACTCCCCAATAA--------G------------GCTT------G......	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TATTGCAAATTT--------ATTGTGACT.....................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATTGCAAATTT--------ATTGTGACT.....................................................................................................................................................	20	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGATGTTTTTACATTTCTA-------CTGCGCATCAAAGTAGAAAAG-TGCA--------TAAATTGTAAGTATAAAT--TAATTTT--TT----ATATTTT-TTAATAGA--------ATTTCTAATAGCATATTGCAAATTT--------ATTGTGAATTGCTGTTGGTTTTGGCTGGCGT--TGTGGA----A--GACGTGGA---------------TAAATATCTGAAA--TGTAAGTCTTG------------AACTCCCGAATAA--------G------------GGTT------GCACGGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................CGCATCAAAGTAGAAAAG-......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1

dm3

C-----------ATCTCTA-------CTGCGCATTGGAGGAGA------------------AAATTGTAAGTATAAAT--TAATTTT--CC----ATATTTT-CTAATACA--------ATTATTTAGAGCATATTGCAAATTT--------ATTGTGACTTGCTGGTTGGGTTGGCTGGCGT--CGTGGA----A--GACAAGGA---------------TAAATATCTGAAA--TCTTAGTTTTC------------AATTCCCGTCTAA--------G----------------------------G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................ATATTTT-CTAATACA--------ATTA...........................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................AAT--TAATTTT--CC----ATATTTT-CT.............................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTAAGTTTTTGAATTTCTA-------CATCACATCAAAAAA----AT-TACA-----A-AAAAATTGAAA--AAAAAA--AAAATTG--TA----A---TTTGAA------------------------------TGCAGATTT--------TTAGAGAA--------------------------------------------------------------------------------------------------------------------------------------------------T--T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TT-------------TGTA-------CTGCTCATCAAAGTCGAGAAG-TGTACTGCTTGGAAAATTCCAGGCTAGGAA--AACAATT--TG----ATATTTT-TAGATGCA--------GTTCGCAATAGAATGTTCGAAT-AT--------TTAGCTGTTTGTCATTGAAGT---------------------------------------------------------------------------------------------------------------------------------------CG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

CGATGTTTTTCCATTTCTA-------AGGTACATTGGGGAA----GA-TTGA--------CGAATTGTAAGAACATGTATC---------ACTTAA---TTTAATGGCA-ACGCTTTTAAACGTTAGCTTAATAAT---ACTTTAGCGATCCG--GCAGCTTCGTGCTATCGTCGACCGTTGT--CGATAAGCTCC--TCTATGAAAATATACTTATATAGTAGAGTTTGGGAT--AGTAAGTATAGTTGGGATACTACAATATCC--------AAAATAACTAT----------TA---ATTTCTTTGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGATGTTTTTCCATCTCTA-------ACGCGCATCAAGAAGGGAAGA-CGTG--------AAAATTGTAAGTAGATTTAA------ATTAAGTTA----TTTC-TGATA-A--------ATTACTTATGTTATGTTGCAAACT---------A--GTGTTCTGTTGGTGGTGTTGGCTGAGGT--AGTGGAGTGGA--GGCATGGA---------------GAGATATCTGAAA--CGTAAGTATTA------------TTA--ACAT----AAAAGCTG-------ACAAATCTTT------GCAT--T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAACTTCTTACATTTTTT-------TTGTGTTTCCAAATAGAAAAA-GACG----------CCTTCAAT-TAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG------------TTA--TTTT----AAATCTTC-------AAGGATTTTT------GAAT--A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGATGTTT-TCCATTTCTAG------CTTCGCATAAAACAAGGAAAA-CGTG--------TAAATTGTAAGTACACTTGT------ATAAAATTG----AGTT-TTATA-G--------CTTACTTATGTTATGTTACAAATT---------A--GTATTCTGTTGGTGGTGTTGGCTGAGGT--AGTGGAGTGGA--GGCATGGA---------------CAAATA----AAATTAGTAATTAATA------------TTA--ATAT----CAAAGCTT-------A--------T------GAAATGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C----------CATCTCTAA------CTGCGCATCTGAGGAAGAAAA-CGTG--------T-AATTGTAAGTAAATTTGT------ATTCATTTA----TTTT-TTATA-A--------ATTACTCATATTTTGTTTTATATT---------A--GTGTTCTGTTGGTGGTGCTGGATGAAGT--TGTGGAGTGGACGGTCATGGA---------------CAGATACCTGAAA--CGTAAGTAATG------------TTA--ATAT----AAAAGCTG----GTGAAATATGTGT------GCAT--C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGATGTTTTTCCATCTCTAATATCTAAGGCGCAAAAGGGAA----GA-TTGA--------CACATTGTAAGTACAAATATC---------ATTTAA---TTTTATTATA-A--------ATTACTAACAGAATATTGTTATTTT----------TAATACTTGTTGGTGGTGTTGGCGTGAGT--GGTGGAAATAA--ATCATGGA---------------CAGATTTTTAAAA--AGTAAGTATTA------------AAT--ACATATCA--GAATTT---TT----------TTGTATTTACATAAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGATGTTTTTCCATCTCTA-------AGGCACAAAGAGGAA----GACCAGG--------CCAATTGTAAGTACATTTATC---------ATTTAA---TCTCATTATA-A--------ATTATTAACAGAATATTGTTATTTT--------AGTTATACTTGTTGGTGGTGTTGGCGGGAGTGTGGTGGTACTTT--AGCATGGA---------------CAGGTTTTTGAAA--AGTAAGTACTA------------AATATCC--------GAATTTATCTT----------CC------GTATGTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGATGTTTAT-CATCTCTA-------ACGAGCATCAAGCAGGGAAGA-CGTG--------AAAATTGTAAGTAGATTTAA------ATTAAGTTA----TTTC-TGATA-A--------ATTACTAATGTTATGTTGCAAACT---------A--GTGTTCTGTTGGTGGTGTTGGCTGAGGT--AGTGGAGTGGA--GGCATGGA---------------GAGATATCTGAAA--CGTAAGTATTA------------TTA--ACAT----AAAAGCTG-------AGGAAACTTT------GCATTTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................GCATCAAGCAGGGAAGA-CGTG--------A.........................................................................................................................................................................................................................................................	22	4	12.25	49	32	14	2	0	1	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--CG........................................................................	25	3	6.00	18	16	1	1	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AAAAT.....................................................................................................................................................................................................................................................	26	4	5.25	21	14	7	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--C.........................................................................	24	3	3.33	10	4	6	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AA........................................................................................................................................................................................................................................................	23	4	3.25	13	12	1	0	0	0	0
..............................................................................................................................................T---------A--GTGTTCTGTTGGTGGTGTTGG......................................................................................................................................	23	7	3.00	21	6	9	6	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--CGA.......................................................................	26	3	2.67	8	5	3	0	0	0	0
.....................................................................................................................................................................................................................................................TA------------TTA--ACAT----AAAAGCTG-------AGGAAACT...............	25	3	2.67	8	1	7	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--CGT.......................................................................	26	3	2.00	6	5	1	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--..........................................................................	23	3	2.00	6	5	1	0	0	0	0
..............................................................................................................................................T---------A--GTGTTCTGTTGGTGGTGTT........................................................................................................................................	21	7	1.86	13	4	5	4	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AAA.......................................................................................................................................................................................................................................................	24	4	1.75	7	3	4	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AAAATT....................................................................................................................................................................................................................................................	27	4	1.75	7	5	1	0	0	1	0
..............................GCATCAAGCAGGGAAGA-CGTG--------..........................................................................................................................................................................................................................................................	21	4	1.75	7	7	0	0	0	0	0
.................................................................................................................................................................TGTTGGTGGTGTTGGCTGAGGT--AG...........................................................................................................................	24	3	1.67	5	3	0	0	0	1	1
..............................................................................................................................................T---------A--GTGTTCTGTTGGTGGTGT.........................................................................................................................................	20	8	1.38	11	2	8	1	0	0	0
...............................................................................................................................................................TCTGTTGGTGGTGTTGGCTGAGG................................................................................................................................	23	3	1.33	4	2	2	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCTGAGG................................................................................................................................	26	3	1.33	4	3	1	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCTGAG.................................................................................................................................	25	3	1.33	4	3	1	0	0	0	0
.....................................................................................................................................................................................................................................................TA------------TTA--ACAT----AAAAGCTG-------AGGAAACTT..............	26	3	1.33	4	2	2	0	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAGTGGA--GG..............................................................................................................	24	3	1.33	4	1	3	0	0	0	0
...............................................................................................................................................................TCTGTTGGTGGTGTTGGCTGAGGT--AG...........................................................................................................................	26	3	1.33	4	3	1	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCTGA..................................................................................................................................	24	7	1.29	9	8	1	0	0	0	0
..................................CAAGCAGGGAAGA-CGTG--------AAAATTTG..................................................................................................................................................................................................................................................	25	4	1.25	5	5	0	0	0	0	0
...............................................................................................................................TGTTATGTTGCAAACT---------A--GTGTTCTGT..................................................................................................................................................	26	3	1.00	3	0	3	0	0	0	0
...............................................................................................................................................................TCTGTTGGTGGTGTTGGCTGAGGT--A............................................................................................................................	25	3	1.00	3	1	2	0	0	0	0
...........................................................................................................................................AACT---------A--GTGTTCTGTTGGTGGTGT.........................................................................................................................................	23	3	1.00	3	0	1	2	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAGTG....................................................................................................................	20	3	1.00	3	2	1	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CG....................................................................................................................................................................................................................................................................	19	4	1.00	4	1	2	0	0	1	0
.................................................................................................................................................................TGTTGGTGGTGTTGGCTGAGG................................................................................................................................	21	3	1.00	3	1	2	0	0	0	0
..........................................................................................................................................................................TGTTGGCTGAGGT--AGTGGAGTGG...................................................................................................................	23	3	1.00	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................TA------------TTA--ACAT----AAAAGCTG-------AGGAAAC................	24	3	1.00	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................TATTA------------TTA--ACAT----AAAAGCTG-------AGGAAAC................	27	3	1.00	3	0	3	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCTG...................................................................................................................................	23	7	0.86	6	5	1	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AAAA......................................................................................................................................................................................................................................................	25	4	0.75	3	3	0	0	0	0	0
.......TAT-CATCTCTA-------ACGAGCATCAAGCAGG............................................................................................................................................................................................................................................................................	27	4	0.75	3	0	3	0	0	0	0
.............TCTCTA-------ACGAGCATCAAGCAGGGAAGA-......................................................................................................................................................................................................................................................................	27	4	0.75	3	1	2	0	0	0	0
..................................CAAGCAGGGAAGA-CGTG--------AAAATT....................................................................................................................................................................................................................................................	23	4	0.75	3	1	1	1	0	0	0
..............................................................................................................................................T---------A--GTGTTCTGTTGGTGGTGTTG.......................................................................................................................................	22	7	0.71	5	1	3	1	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGC.....................................................................................................................................	21	7	0.71	5	1	2	1	1	0	0
..............................................................................................................................................T---------A--GTGTTCTGTTGGTGGTGTTGGC.....................................................................................................................................	24	7	0.71	5	2	2	1	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAGTGGA--G...............................................................................................................	23	3	0.67	2	1	1	0	0	0	0
.........................................................................................................................................................................................................................................A--CGTAAGTATTA------------TTA--ACAT----AAAAGCT...............................	26	3	0.67	2	0	2	0	0	0	0
.................................................................................................................................................................TGTTGGTGGTGTTGGCTGAGGT--AGT..........................................................................................................................	25	3	0.67	2	1	0	0	0	0	1
...................................................................................................................................................................................................................................................ATTA------------TTA--ACAT----AAAAGCTG-------AGGAAACT...............	27	3	0.67	2	0	2	0	0	0	0
..........................................................................................................................................................................TGTTGGCTGAGGT--AGTGGAGT.....................................................................................................................	21	3	0.67	2	0	2	0	0	0	0
..............................................................................................................................................................TTCTGTTGGTGGTGTTGGCTGAGGT--A............................................................................................................................	26	3	0.67	2	2	0	0	0	0	0
............................................................................................................................................ACT---------A--GTGTTCTGTTGGTGGTGT.........................................................................................................................................	22	3	0.67	2	0	1	1	0	0	0
...........................................................................................................................................................................GTTGGCTGAGGT--AGTGGAG......................................................................................................................	19	3	0.67	2	1	1	0	0	0	0
..............................................................................................................................................................TTCTGTTGGTGGTGTTGGCTGAGG................................................................................................................................	24	3	0.67	2	2	0	0	0	0	0
...................................................................................................................................................................................................A--GGCATGGA---------------GAGATATCTGAAA--CG........................................................................	24	3	0.67	2	2	0	0	0	0	0
.........................................................................................................................................CAAACT---------A--GTGTTCTGTTGGTGG............................................................................................................................................	22	3	0.67	2	0	1	1	0	0	0
.......................................................................................................................................TGCAAACT---------A--GTGTTCTGTTGGTGGTGT.........................................................................................................................................	27	3	0.67	2	1	0	1	0	0	0
..............................................................................................................................................................TTCTGTTGGTGGTGTTGGCTGAGGC--.............................................................................................................................	25	3	0.67	2	1	1	0	0	0	0
...........................................................................................................................................AACT---------A--GTGTTCTGTTGGTGGTGTT........................................................................................................................................	24	3	0.67	2	1	0	1	0	0	0
...............................................................................................................................................................TCTGTTGGTGGTGTTGGCTGAGGC--.............................................................................................................................	24	3	0.67	2	0	2	0	0	0	0
.................................................................................................................................................................TGTTGGTGGTGTTGGCTGAGGT--AGTG.........................................................................................................................	26	3	0.67	2	2	0	0	0	0	0
.........................................................................................................................................CAAACT---------A--GTGTTCTGTTGGTGGT...........................................................................................................................................	23	3	0.67	2	0	0	2	0	0	0
...................................................................................................................................................................TTGGTGGTGTTGGCTGAGGT--AGT..........................................................................................................................	23	3	0.67	2	0	1	1	0	0	0
...........................................................................................................................................................................GTTGGCTGAGGT--AGTGGAGTGG...................................................................................................................	22	3	0.67	2	2	0	0	0	0	0
.......................................................................................................................................TGCAAACT---------A--GTGTTCTGTTGGTGG............................................................................................................................................	24	3	0.67	2	0	1	1	0	0	0
.......................................................................................................................................TGCAAACT---------A--GTGTTCTGTTGGTG.............................................................................................................................................	23	3	0.67	2	1	0	1	0	0	0
....................................................................................................................................TGTTGCAAACT---------A--GTGTTCTGTTGGTG.............................................................................................................................................	26	3	0.67	2	2	0	0	0	0	0
...........................................................................................................................................AACT---------A--GTGTTCTGTTGGTGGT...........................................................................................................................................	21	3	0.67	2	1	0	1	0	0	0
........AT-CATCTCTA-------ACGAGCATCAAGCAG.............................................................................................................................................................................................................................................................................	25	4	0.50	2	2	0	0	0	0	0
...........................CGAGCATCAAGCAGGGAAGA-CG....................................................................................................................................................................................................................................................................	22	4	0.50	2	2	0	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AAAATTG...................................................................................................................................................................................................................................................	28	4	0.50	2	2	0	0	0	0	0
...........................CGAGCATCAAGCAGGGAAGA-CGTG--------A.........................................................................................................................................................................................................................................................	25	4	0.50	2	2	0	0	0	0	0
.........T-CATCTCTA-------ACGAGCATCAAGCAGG............................................................................................................................................................................................................................................................................	25	4	0.50	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................TA------------TTA--ACAT----AAAAGCTG-------AGGAAACTTT------.......	27	3	0.33	1	0	1	0	0	0	0
.............................................................................................................................................CT---------A--GTGTTCTGTTGGTGGTG..........................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................AGGT--AGTGGAGTGGA--GGCATGG.........................................................................................................	22	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................................................................................GTGGAGTGGA--GGCATGGA---------------GAGA.....................................................................................	22	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................................................................TGGCTGAGGT--AGTGGAGTGGA--G...............................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.............................................................................................................................................................................TGGCTGAGGT--AGTGGAGTGG...................................................................................................................	20	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................ATTA------------TTA--ACAT----AAAAGCTG-------AGGAAT.................	25	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................ATTA------------TTA--ACAT----AAAAGCTG-------AGGAAAC................	26	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................GAGGT--AGTGGAGTGGA--GGCATGG.........................................................................................................	23	3	0.33	1	0	0	0	0	1	0
................................................................................................................................................................CTGTTGGTGGTGTTGGCTGAGGT--A............................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
........................................................................................................................................................................................................CATGGA---------------GAGATATCTGAAA--CGTAAGT...................................................................	26	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................TTGGTGGTGTTGGCTGAGGT--AG...........................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................GGCATGGA---------------GAGATATCTGAAA--CGTAAG....................................................................	27	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................ACT---------A--GTGTTCTGTTGGTGGTG..........................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................................................................TGAGGT--AGTGGAGTGGA--GGCATGGA---------------G........................................................................................	26	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TA------------TTA--ACAT----AAAAGCTG-------AGGA...................	21	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TA------------TTA--ACAT----AAAAGCTG-------AGGAAACC...............	25	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--CGTT......................................................................	27	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................GGCATGGA---------------GAGATATCTGAAA--CGTAAGA...................................................................	28	3	0.33	1	0	1	0	0	0	0
...........................................................................................................................................................................................TGGAGTGGA--GGCATGGA---------------GAGATAGT.................................................................................	25	3	0.33	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AA--CGTAAGTATTA------------TTA--ACAT----AAAAGC................................	26	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................TATTA------------TTA--ACAT----AAAAGCTG-------AGGAA..................	25	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................................................................................GGA--GGCATGGA---------------GAGATATCTGA..............................................................................	22	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................GTTGGTGGTGTTGGCTGAGGT--AG...........................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................TTATGTTGCAAACT---------A--GTGTTCTGT..................................................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................TATTA------------TTA--ACAT----AAAAGCTG-------AGGAAA.................	26	3	0.33	1	0	1	0	0	0	0
........................................................................................................TGATA-A--------ATTACTAATGTTATGTTGCAAAC........................................................................................................................................................................	29	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................GAGGT--AGTGGAGTGGA--GGCAT...........................................................................................................	21	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................................AAACT---------A--GTGTTCTGTTGGTGG............................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGA..............................................................................	21	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................................TGCAAACT---------A--GTGTTCTGTTGGTGGC...........................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAG......................................................................................................................	18	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TGGA---------------GAGATATCTGAAA--CGTAAGTAT.................................................................	26	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................TGTTGCAAACT---------A--GTGTTCTGTTGG...............................................................................................................................................	24	3	0.33	1	0	0	0	0	0	1
....................................................................................................TTC-TGATA-A--------ATTACTAATGTTATGTTGC............................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................................TGTTGGCTGAGGT--AGTGGAGG.....................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TTA------------TTA--ACAT----AAAAGCTG-------AGGAAACTT..............	27	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................................................................TGGTGTTGGCTGAGGT--AGTGGAGTTT...................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................................................TCTGTTGGTGGTGTTGGCTGAG.................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................TTATGTTGCAAACT---------A--GTGTTCTGC..................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................AAGTATTA------------TTA--ACAT----AAAAGCTG-------AGGA...................	27	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................AAACT---------A--GTGTTCTGTTGGTGGC...........................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
..............................................................................................................................ATGTTATGTTGCAAACT---------A--GTGTTC.....................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................TTATGTTGCAAACT---------A--GTGTTCT....................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................TTATGTTGCAAACT---------A--GTGTTCTG...................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
...........................................................................................................................................................................................TGGAGTGGA--GGCATGGA---------------GAGATA...................................................................................	23	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................................................................T--AGTGGAGTGGA--GGCATGGA---------------.........................................................................................	20	3	0.33	1	0	0	1	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--CGAT......................................................................	27	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................ATTA------------TTA--ACAT----AAAAGCTG-------AGGAAACTT..............	28	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................TTGGTGGTGTTGGCTGAGG................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................TGTTATGTTGCAAACT---------A--GTGTTCTGTTGG...............................................................................................................................................	29	3	0.33	1	1	0	0	0	0	0
................................................................................................................................................................................................TGGA--GGCATGGA---------------GAGATATCTGAAA--..........................................................................	25	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................................................................GT--AGTGGAGTGGA--GGCATGGA---------------GAGAT....................................................................................	26	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................TTA--ACAT----AAAAGCTG-------AGGAAACTTT------GC.....	27	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAGTGG...................................................................................................................	21	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................................................TCTGTTGGTGGTGTTGGCTGAGT................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................T--AGTGGAGTGGA--GGCATGGA---------------GAGATAT..................................................................................	27	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................TGGTGGTGTTGGCTGAGGT--AGT..........................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................GTTGCAAACT---------A--GTGTTCTGTTGGTGG............................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATC.................................................................................	18	3	0.33	1	0	0	1	0	0	0
.......................................................................................................................................................................TGGTGTTGGCTGAGGT--AGTG.........................................................................................................................	20	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................................................................TGGTGTTGGCTGAGGT--AGTGGAGTT....................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAGTGGA--GT..............................................................................................................	24	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................TTGCAAACT---------A--GTGTTCTGTTGGTG.............................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................................................TGGA--GGCATGGA---------------GAGATATCTGAAA--C.........................................................................	26	3	0.33	1	1	0	0	0	0	0
....................................................................................................TTC-TGATA-A--------ATTACTAATGTTATGT...............................................................................................................................................................................	25	3	0.33	1	0	0	1	0	0	0
...................................................................................................................................................................................................A--GGCATGGA---------------GAGATATCTGAAA--CGA.......................................................................	25	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAAA--CGC.......................................................................	26	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................................................................TGGTGTTGGCTGAGGT--AGTGGAGC.....................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
...............................................................................................................................................................................GCTGAGGT--AGTGGAGTGGA--GGCATG..........................................................................................................	25	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................TATGTTGCAAACT---------A--GTGTTCT....................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................TTGGCTGAGGT--AGTGGAGTGGA--GGC.............................................................................................................	25	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................AACT---------A--GTGTTCTGTTGGTGGC...........................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TTA------------TTA--ACAT----AAAAGCTG-------AGGAAA.................	24	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................AAACT---------A--GTGTTCTGTTGGTG.............................................................................................................................................	20	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................ACT---------A--GTGTTCTGTTGGTGGT...........................................................................................................................................	20	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................TTGGTGGTGTTGGCTGAGGT--AGTGG........................................................................................................................	25	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................TTGCAAACT---------A--GTGTTCTGTTGGTGGT...........................................................................................................................................	26	3	0.33	1	0	0	1	0	0	0
..........................................................................................................................................................................TGTTGGCTGAGGT--AGTGGAGTGGA--................................................................................................................	24	3	0.33	1	0	0	1	0	0	0
................................................................................................................................GTTATGTTGCAAACT---------A--GTGTTCTGC..................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................TTGCAAACT---------A--GTGTTCTGTTGG...............................................................................................................................................	22	3	0.33	1	0	0	1	0	0	0
......................................................................................................................................................................................................GGCATGGA---------------GAGATATCTGAAA--CG........................................................................	23	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................TTCTGTTGGTGGTGTTGGCTGAGGT--AG...........................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................TGGTGGTGTTGGCTGAGGT--AGTGGA.......................................................................................................................	25	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................................................................TGGCTGAGGT--AGTGGAGTGGA--GG..............................................................................................................	23	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................A--ACAT----AAAAGCTG-------AGGAAACT...............	21	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................TGGTGGTGTTGGCTGAGGT--AGTGG........................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATATCTGAA.............................................................................	22	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................GTTGGCTGAGGT--AGTGGAGTG....................................................................................................................	21	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCTGAGGT--A............................................................................................................................	28	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................GTTGGTGGTGTTGGCTGAGGT--.............................................................................................................................	21	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................TGGTGGTGTTGGCTGAGGT--AGTGGC.......................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................TAAGTATTA------------TTA--ACAT----AAAAGC................................	22	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................................................TGGA--GGCATGGA---------------GAGATATCTGAAA--AA........................................................................	27	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................A------------TTA--ACAT----AAAAGCTG-------AGGAAACT...............	24	3	0.33	1	0	1	0	0	0	0
...........................................................................................................................................................................GTTGGCTGAGGT--AGTGGAGTGGA--................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................TTATGTTGCAAACT---------A--GTGTTCTGTTGG...............................................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................GGCATGGA---------------GAGATATCTGAAA--CGA.......................................................................	24	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................ATTA------------TTA--ACAT----AAAAGCTG-------AGGAAAA................	26	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................TATTA------------TTA--ACAT----AAAAGCTG-------AGGAAACT...............	28	3	0.33	1	0	1	0	0	0	0
...........................................................................................................................................................GTGTTCTGTTGGTGGTGTTGGC.....................................................................................................................................	22	7	0.29	2	0	2	0	0	0	0
..............................................................................................................................................T---------A--GTGTTCTGTTGGTGGTGTTGGCTG...................................................................................................................................	26	7	0.29	2	2	0	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTG.......................................................................................................................................	19	7	0.29	2	2	0	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGG......................................................................................................................................	20	7	0.29	2	0	1	1	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCT....................................................................................................................................	22	7	0.29	2	0	2	0	0	0	0
..................................CAAGCAGGGAAGA-CGTG--------AAAATTGT..................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0
..................................CAAGCAGGGAAGA-CGTG--------AAAATTGTGTC...............................................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	1	0
..................A-------ACGAGCATCAAGCAGGGAAGA-C.....................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
.............................AGCATCAAGCAGGGAAGA-CGTG--------..........................................................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
.............................................................................TAA------ATTAAGTTA----TTTC-TGAT..........................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0
..................................................................................................................................................................................................GA--GGCATGGA---------------GAGATAAA.................................................................................	18	4	0.25	1	1	0	0	0	0	0
...............................CATCAAGCAGGGAAGA-CGTG--------AAAATTG...................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
..................A-------ACGAGCATCAAGCAGGGA..........................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
...................................AAGCAGGGAAGA-CGTG--------AAAATTTG..................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
..............................................................AATTGTAAGTAGATTTAA------ATTAAG..........................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0	0
...................................AAGCAGGGAAGA-CGTG--------AAAAT.....................................................................................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0
................CTA-------ACGAGCATCAAGCAGGGAAGA-......................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AC........................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
..................................CAAGCAGGGAAGA-CGTG--------AAAATTG...................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
.............................................................................TAA------ATTAAGTTA----TTTC-TGATA-A--------ATTAC..........................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
..................A-------ACGAGCATCAAGCAGGGAAGA-CGTG--------A.........................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
...........CATCTCTA-------ACGAGCATCAAGCAGG............................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
...................................AAGCAGGGAAGA-CGTG--------AAAATTTGT.................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0
..................................CAAGCAGGGAAGA-CGTG--------AAAATTTGC.................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
.................TA-------ACGAGCATCAAGCAGGGAAGA-C.....................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0
.............TCTCTA-------ACGAGCATCAAGCAGGGAAG........................................................................................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------AAT.......................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGTG--------TT........................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
................CTA-------ACGAGCATCAAGCAGGGAATT-......................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
........AT-CATCTCTA-------ACGAGCATCAAGCAGG............................................................................................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
..............................GCATCAAGCAGGGAAGA-CGC...................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0
...........................CGAGCATCAAGCAGGGAAGA-......................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0
............................................................................................................................................................TGTTCTGTTGGTGGTGTTGGCTGT..................................................................................................................................	24	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................TTCTGTTGGTGGTGTTGGCT....................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0

droBip1

CGATGTTTTTCCATCTCTA-------AAGCACTTTGAGGAAGATTGA-CGAA--------TAACTTGTAAGTATAT----CATTTTATTACATTA----TTTCATTATA-T--------ATTACTAACAGAATATTTTAAATTT--------AGTGATATTTGTTGGTGGTGTTGGCGTGAGTGCGGAGGCGATTA--GACATGGA---------------CAGATTTTTGAAA--AGTAAGTATTA------------AAA--AGCC----AAGATTTT----ATCACGAATTTAT------GCAC--G	Size	Hit Count	Total Norm	Total
No Reads

dsi_29732

x:452551-452650 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.1	-18.2	-18.2