ID:

dsi_29717

 Coordinate:

2r:5795235-5795275 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5794650_5795475_-]; exon [2r_5794294_5795475_-]

No Repeatable elements found

Sense Strand Reads

#############################################################################################################################################
TGAGGAGCTCTACGGCTGGACCATGGACCGCATTGTTGCCCAGATCGGACGTTCTAACAACTGCACGTTTTGCGGCGTCTTCCGTCGACAGGCCTTGGATAGAGGGGCAAAGCTTTTGGGCGTTGACAGCATAGCCACAGG
**************************************************...................((((((((.....))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902008
ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae
.............................................................................TCTTCCGTCGACAGGCCTTGG........................................... 21 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0
...................................TTGCCCAGATCGGACGTTCTAACAAC................................................................................ 26 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0
....................................TGCCCAGATCGGACGTTCTAACAAC................................................................................ 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
.......................TGGACCGCATTGTTGCCCAGATTGGACGT......................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................TGCCCAGATTGGACGTTCTAACAACTGC............................................................................. 28 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
.......................TGGACCGCATTGTTGCCCAGATCGGA............................................................................................ 26 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................CTTGGGTATAGGGGCAAA.............................. 18 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....GAGCTCTACGGCTGGACCATGGACC................................................................................................................ 25 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0
....................................TGCCCAGATCGGACGTTCTAACAACTGC............................................................................. 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................TGCACGTTTTGCGGCGTCTTCCGCCGA..................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................TTGCCCAGATCGGACGTTCTAACCAC................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................TGCCCAGATCGGACGTTCTAAC................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........TACGGCTGGACCATGGACCGCATT........................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........TCTACGGCTGGACCATGGACCGCATTGT......................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................TGCCCAGATCGGACGTTC....................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................TGGACCATGGACCGCATTGTTGCCCAGATC............................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................GTTGCCCAGATCGGACGTTCTAA.................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................GTCTTCCGTCGACAGGCCTTGGATAGA...................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................TTGGATAGAGGGGCGAAGCTTTTGGGCGT.................. 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................CGCATTGTTGCCCAGATCGGACGTTC....................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................TTGTTGCCCAGATCGGACGTTCTAAC................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................GCCCAGATTGGACGTTCTAACAACTGC............................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTTGGGTATAGGGGCAAAGA............................ 20 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................TTGGGTATAGGGGCAAAG............................. 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................TCAGGCGTTTGATAGAGGGG.................................. 20 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................TTGGGTATAGGGGCAAA.............................. 17 2 10 0.30 3 0 0 0 0 0 0 0 0 0 0 2 1
.....................................GCCCAGATCGTACGCT........................................................................................ 16 2 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGGATATAGGGGCGAA.............................. 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................CCAAAGCTTTTGGGC.................... 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
.............................................................................................CTTGGGTATAGGGGCGAAG............................. 19 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
................................TTGTTGCTCAGGTCGGA............................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................AAAGCTTTTGGGCGC.................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................TTGGATATAGGGGCGAAGA............................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTCCTCGAGATGCCGACCTGGTACCTGGCGTAACAACGGGTCTAGCCTGCAAGATTGTTGACGTGCAAAACGCCGCAGAAGGCAGCTGTCCGGAACCTATCTCCCCGTTTCGAAAACCCGCAACTGTCGTATCGGTGTCC
**************************************************...................((((((((.....))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
............GCCGACCTGGTACCTGG................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....TCGAGATGCCGACCTGGTAC.................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................AGCCTGCAAGGTTGTTGACGT............................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................AACGGGTCTAGCCTGCAA........................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................CCGCAGAAGGCAGCTGTC.................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................GCAAGATTGTTGACGTG........................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................CAAGATTGTTGACGTGCAAAACGCC.................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................CGCAGAAGGCAGCTGTCCGG............................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................GCAGAAGGCAGCTGTCCGGAA............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TTGGCTGTCCGGAACCTATCT...................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.............................................................................AGAAGGGAGCTGTACGGGAC............................................ 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......CGAGCTGCCTACCTGGGACCT.................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
........................................................................................GACCGGAACCTATCT...................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
.................................................GCAAGATTGCTGACTTG........................................................................... 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..............................................CCTGCGAGATGGTTGAC.............................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0
..............................................................CGTGTCAAACGACGCAGAAG........................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 11:29 PM