ID:

dsi_29713

 Coordinate:

node_12893:11435-11584 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.8 -18.77 -18.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+

Sense Strand Reads

TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGATCCTCTCGGTAAGCAAGGTTAAGCAACTTAATCGATTTAAAGGCGTATATATATAATTTTAACCACAATCATTTACTTAGTATGCTGTTAACGAAAATTCATTTGCCGAAATGCAACGGTTTTAGTTATTATCTTATTAAATTTAGATTCGTTGAAAAGTATGTAACAGTCAGAAGGAAGCGTTTCCGACTATATAAAGTATATATAT
**************************************************........(((((((...)))))))...((((.(((((((.((..(((................)))..))))))))).))))........(((((....)))))((((((.(((((...(((......)))..))))).))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR902009
testis
 M053
female body
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAGAAGGAA............................. 25 0 5 4.80 24 2 9 10 0 1 0 2 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGCGTT........................ 25 0 7 2.29 16 10 3 1 0 0 0 1 0 0 1
.................................TCGCATCGATCCTCTCGGTAAGCAAGGT............................................................................................................................................................................................. 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................TGCCGAAATGCAACGGTTTTAGTTA................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGTTAACGAAAATTCATTTGCCGAAA................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAG................................... 19 0 8 0.75 6 0 0 0 0 0 6 0 0 0 0
.............................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGTCAGA.................................. 27 0 3 0.67 2 0 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................CAGTCAGAAGGAAGCGTTTCCGACTA................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGT...................................... 23 0 7 0.43 3 0 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAGAAGGA.............................. 24 0 7 0.43 3 0 0 1 1 1 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAGAAGGAAG............................ 26 0 5 0.40 2 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGTC..................................... 24 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................AGTCAGAAGGAAGCGTTTCCGA................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....................................................................CTTATTCGATTTAAAGGC.................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................ACAGTCAGAAGGAAGCGTTTCCG.................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTAACAGTCAGAAGGAAGCGTT........................ 22 0 7 0.29 2 0 0 0 0 0 0 0 0 2 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGCGT......................... 24 0 7 0.29 2 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................TAGATTCGTTGAAAAG................................................. 16 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGATTCGTTGAAAAGTATGTAACAGT...................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAGTATGTAACAGTCAGAAGGAAGC........................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAGAAGGAAGC........................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGC........................... 22 0 10 0.20 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAGAAGGGA............................. 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACAGTCAGAAGGAAGCGTT........................ 20 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCGTTTAGAAGTATGTAACAGTCAGA.................................. 27 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGATTCGTTGACAAGTATGAAATAGT...................................... 27 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGTCAGAGGGA.............................. 24 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAG............................ 21 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGCG.......................... 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAGAAGGAAGCGTTTCCGACT................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGAA............................. 20 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGG............................... 18 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAAGGTATGTAACAGTCAGAAGGAAG............................ 26 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATGTAACAGTCAGAAGGA.............................. 19 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACAGTCAGGAGGAAGC........................... 17 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.....................................ATCGATCCTTTCGGT...................................................................................................................................................................................................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AAAAGTATGTAACAGT...................................... 16 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCGTTGAAAAGTATGTAACA........................................ 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................ACAGTCAGAAGAAAGCGTT........................ 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAGCGTTTCCGACTATATAAAGT........ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCGTGGCGGTGCCGTCTACCCCTTTAGTAAAAAGCGTAGCTAGGAGAGCCATTCGTTCCAATTCGTTGAATTAGCTAAATTTCCGCATATATATATTAAAATTGGTGTTAGTAAATGAATCATACGACAATTGCTTTTAAGTAAACGGCTTTACGTTGCCAAAATCAATAATAGAATAATTTAAATCTAAGCAACTTTTCATACATTGTCAGTCTTCCTTCGCAAAGGCTGATATATTTCATATATATA
**************************************************........(((((((...)))))))...((((.(((((((.((..(((................)))..))))))))).))))........(((((....)))))((((((.(((((...(((......)))..))))).))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 M023
head
 O001
Testis
...................................................................................................................ATGAATCATACGACAATTGCTTTTAAGT........................................................................................................... 28 0 1 21.00 21 13 8 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGCTGATATATTTCATATATATA 24 0 20 16.60 332 0 0 213 101 18 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AGAATAATTTAAATCTAAGCAACTTT................................................... 26 0 1 9.00 9 8 1 0 0 0 0 0 0 0 0 0 0 0
.............................................AGAGCCATTCGTTCCAATTCGTTGAAT.................................................................................................................................................................................. 27 0 1 6.00 6 2 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGCAAAGGCTGATATATTTCATATA.... 25 0 20 5.40 108 99 0 0 0 8 0 0 1 0 0 0 0 0
.....................................................................................................................GAATCATACGACAATTGCTTTTAAGT........................................................................................................... 26 0 1 5.00 5 1 3 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAATTGGTGTTAGTAAATGAATCAT.............................................................................................................................. 26 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TAAAATTGGTGTTAGTAAATGAATCAT.............................................................................................................................. 27 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AAGTAAACGGCTTTACGTTGCCAAAAT.................................................................................... 27 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGGCTGATATATTTCATATATATA 25 0 20 3.45 69 0 6 63 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCATACATTGTCAGTCTTCCT.............................. 21 0 13 3.31 43 21 19 1 0 1 1 0 0 0 0 0 0 0
.................................................................................................................AAATGAATCATACGACAATTGCTTTTAAGT........................................................................................................... 30 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
....TGGCGGTGCCGTCTACCCCTTTAGT............................................................................................................................................................................................................................. 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATGAATCATACGACAATTGCTTTTAAG............................................................................................................ 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AGCTAAATTTCCGCATAT............................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................AAAAAGCGTAGCTAGGAGAGCCAT..................................................................................................................................................................................................... 24 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGACAATTGCTTTTAAGTAAACGGCTT.................................................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAATGAATCATACGACAATTGCTTTT............................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAACGGCTTTACGTTGCCAAAATCAAT................................................................................ 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTCATACATTGTCAGTCTTCCTTCGCAA........................ 28 0 2 2.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0
......................................AGCTAGGAGAGCCATTCGTTCCAATTCGT....................................................................................................................................................................................... 29 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................ATATATATTAAAATTGGTGTTAGT......................................................................................................................................... 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................ATATATTAAAATTGGTGTTAGTAAAT..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAATTGGTGTTAGTAAATTAAT................................................................................................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTGGTGTTAGTAAATGAATCAT.............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATGAATCATACGACAATTGCT.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGTAAACGGCTTTACGTTGCCAAAAT.................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AACGGCTTTACGTTGCCAAAATCAAT................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGAATCATACGACAATTGCTTTTAAGT........................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGAATTAGCTAAATTTCCGCATATAT............................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TAAAATTGGGGTTAGTAAATGAATCAT.............................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTACGTTGCCAAAATCAATAATAGAATAA...................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AGAATAATTTAAATCTAAGCAAGTTT................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATGAATCATACGACAATTGCTTTT............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATATATATATTAAAATTGGTGTTAGTAA....................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TACGTTGCCAAAATCAATAATAGAAT........................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TGCCGTCTACCCCTTTAGTAAAAAGCGT.................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCCAATTCGTTGAATTAGCTAAAT......................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTACGTTGCCAAAATCAATAATAGAAT........................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........GCCGTCTACCCCTTTAGTAAAAAGCGT.................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TACGTTGCCAAAATCAATAATAGAATAATT.................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TAAAATTGGTGTTAGTAAATGAATCATAC............................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTAAAATTGGTGTTAGTAAATGAAT................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................TAGTAAAAAGCGTAGCTAGGAGAGCCA...................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AATGAATCATACGACAATTGCTTTTAAGT........................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCCAATTCGTTGAATTAGCTAAATTT....................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCCAATTCGTTGAATTAGCTAAATT........................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTTGAATTAGCTAAATTTCCGCAT................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATATATTTCATAT..... 25 0 20 0.75 15 0 0 15 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTAGCTCTAAGCAACTTTTCATACA............................................ 26 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGTCTTCCTTCGCAAAGGCTGATATAT............ 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTCATACATTGTCAGTCTTCCT.............................. 22 0 8 0.50 4 1 2 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGCAAAGGCTGATATATTTCATATATATA 29 0 20 0.50 10 0 0 10 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGTCTTCCTTCGCAAAGGCTGATAT.............. 25 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCCTTCGCAAAGGCTGATATATTTCAT....... 28 0 20 0.30 6 0 6 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATATATTTCATATAT... 27 0 20 0.30 6 0 0 5 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CAAAGGCTGATATATTTCATATATATA 27 0 20 0.30 6 0 0 0 0 6 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCATACATTGTCAGTCTTCCTT............................. 22 0 11 0.27 3 3 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGATATATTTCAT....... 29 0 20 0.25 5 2 0 0 0 3 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCGCAAAGGCTGATATATTTCATATA.... 27 0 20 0.25 5 0 2 0 0 0 0 3 0 0 0 0 0 0
................................................................................................................................................................................................CAACTTTTCATACATTGTCAGTCTTCCT.............................. 28 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAGGCTGATATATTTCATATATATA 26 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCCAAGTCGGTGAATTAG............................................................................................................................................................................... 18 2 9 0.22 2 0 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................TAAGCAACTTTTCATACATTGT........................................ 22 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTCATACATTGTCAGTCTTCCTTC............................ 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................AAGCAAATTTTCATACATTGTCAGTCTTC................................ 29 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTTCGCAAAGGCTGATATATTTCAT....... 25 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0
......GGGGTGCCGTCTATCCC................................................................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGCTGATATATTTCATATATATA 23 0 20 0.15 3 0 0 2 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATTTATTTCCTATTTAT. 29 3 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCCTTCGCAAAGGCTGATATATT........... 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAAAGGCTGATATATTTCATATA.... 23 0 20 0.15 3 0 2 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATATATTTCATATA.... 26 0 20 0.15 3 1 0 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................TTTTCATACATTGTCAGTCTTCCT.............................. 24 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........GGTGCTGTCTATCCCTT................................................................................................................................................................................................................................. 17 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGTCAGTCTTCCTTCGCAAAG...................... 21 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................TTTCATACATTGTCAGTCTTCCT.............................. 23 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGCAAAGGCTGATATATTTCATAT..... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCCTTCGAAAAGGCTGATATATTT.......... 26 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCCTTCGAAAAGGCTGATATATT........... 24 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCTTCGCAAAGGCTGATATATTT.......... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCATACATTGTCAGTCTTCCTTCG........................... 24 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCTTCGCAAAGGCTGATATATTTCAT....... 27 0 20 0.10 2 0 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCCTTCGAAAAGGCTGATATATT........... 25 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTTCCTTCGAAAAGGCTGATATAT............ 25 1 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAGCAACTTTTCATACATTGT........................................ 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCCTTCGAAAAGGCTGATATAT............ 24 1 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAGGCTGATATATTTCATATAT... 22 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................CGCAAAGGCTGATATATTTCAT....... 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..........TGCCGTCTATCCCTT................................................................................................................................................................................................................................. 15 1 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TTACATCCATTGTCAGTCTTCCTT............................. 24 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATACATTGTCAGTCTTCCT.............................. 19 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCATACATTGTCAGTCTTC................................ 19 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTTTTATACATTGTCAGTCTTCCT.............................. 24 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AATAGGTGATAGTAATTGAA.................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................ATTTCTTCTAAGTAAACG...................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................TCATACGTTGTCAGTCTTCCTTC............................ 23 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................TCCTTCGAAAAGGCTGATATATTT.......... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCCTGCGCAAAGGCTGATATATTTCAT....... 29 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGCGCAAAGGCTGATATATTTCAT....... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCGCAAAGGCTCATATATTTCATATAT... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCTTCGCAAAGGCTGATATAT............ 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TCCTGCGCAAAGGCTGATATA............. 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTCTTCCTTCGAAAAGGCTGATATATT........... 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGATATATT........... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCACATACATTGTCAGTCTTCCT.............................. 24 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCCTTCGCAAAGGCTGATATATTTCATA...... 29 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CTAAGCAACTTTTCATACATTGT........................................ 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATATACATTGTCAGTCTTCCT.............................. 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCAAAGGCTGATATATTTCATATATATA 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................AAGCAACTTTTCATACAT........................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATAT.............. 16 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................AAATACATTGTCAGTCTTCCT.............................. 21 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGCTGATATATTTCATATAT... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGCTGATATATTTCATATATAT. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGGCTGATATATTTCATATAT... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGCTGATATATTTCATATATA.. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAGGCTGATATATTTCATATA.... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................CTTCCTTCGCAAAGGCTGATATATTT.......... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGTCTTCCTTCGCAAAGGCTGGTAT.............. 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGCTGATATATTTCATATA.... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGGCTGATATATTTCATATATAT. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATCTAAGCAACTTTTCATACATTGT........................................ 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCCTTCGAAAAGGCTGATATATTTCAT....... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............CTGCTATCCCTTTAGTAA........................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCTTCGCAAAGGCTGATATATTTCAT....... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTTCCTTCGCAAAGGCTGATATAT............ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATATA............. 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TCGCAAAGGCTGATTTATTTCATAT..... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_12893:11385-11634 + dsi_29713 TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGA--TCCT----------------CTCG--GTAAGCAAGGTTAAGCAACTTAATCGATTTA---------AAGGC----------------------------------------------------------------------------------------GTATATATATAATTTT------------------AA-------------------------------------------------------------------------------------------------------------------------------------CCACAAT----CATTTACTTAGTATGCTGTTA--------ACGA---A-----A------------------------ATTC----------------ATTTG---------------CCGAAATGCAA-----------------------------------------------CGGTT--TTAGTTATTATCTT------------------------------------------------------------ATTAA-------------------AT-TTAGATTC--GTT---G-A----AAAGTATGTAACAGTCAGAAGGAAGCGTTTCCGACTATATAAAGTATA--------TATAT
droSec2 scaffold_6:64334-64583 + TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGA--TCCT----------------CTCG--GTAAGCAAGGTTAAGCAACTTAATCGATTTA---------AAGGC----------------------------------------------------------------------------------------GTATATATATAATTTT------------------AA-------------------------------------------------------------------------------------------------------------------------------------CCACAAT----CATTTACTTAGTATGCTGTTA--------ACGA---A-----A------------------------ATTC----------------ATTTG---------------CCGAAATGCAA-----------------------------------------------CGGTT--TTAGTTATTATCTT------------------------------------------------------------ATTAA-------------------AT-TTAGATTC--ATT---G-A----AAAGTATGTAACAGTCAGAAGGAAGCGTTTCCGACTATATAAAGTATA--------TATAT
dm3 chr3RHet:2382032-2382243 + TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATTGA--TCCT----------------CTCG--GTAAGCAAGGTTAAGCAACTTAATCGATTTA---------TAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTCTGGATTAACCCTAAC----CATTTACTTAGTTTTCTGTTT--------ACCA---A-----A------------------------AT------------------ATTTA---------------CCGAAATGCAA-----------------------------------------------CGGTT--TGAGTTATTATTTA-----TTTAAATTCA------------TTTACCCGTT----------------------------------------------------------------------------------------------------------ACTATATATAT-------ATATATATAT
droEre2 scaffold_4770:282386-282581 + CAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGA--TCCT----------------CTGG--GTAAGCAAGGTTAAGCCACTTAAGCGATTTT---------CAGAT----------------------------------------------------------------------------------------ATGTAT---GAAAG--------------------------------------------------------------------------------------------TATAAT------------------------------------------TTATTTCTTGATTAACTTTTAT----TATTGATTTTATACGCTGTTT--------ACGA---A-----A------------------------ATAC----------------TTTCG---------------ATGAAATGAAA-----------------------------------------------TGATT--TTAGTGTTTATCTG------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------CAA
droYak3 v2_chrUn_5709:172609-172851 - TCT------------------------------GTGTATTTA--TTTG----------------CTTT--GCAAGCAAGGCTGTGCATCTTGCGTCAAATA---------AACAA----------------------------------------------------------------------------------------C-----------TATAAACCAAGAATATTATTTGAA--------------------------------CAATAAGTGTAATTA---------------ATTCAAAAGCTGATAAAA------------------------------------------------------------------------------------------------G---------A------------------------GATC----------------ATTGG---------------CTAAA---CAA-----------------------------------------------TAGGT------------------------ATACTTT------------TATACCCGTTAC-------------------TCGTAGAGTAAAGGGGTA---------TACTAGATTC--GTT---A-T----AAAGCATGTAACAGGCAGAAGAAAGCGTTTTCGACCATATAAAATATA--------TATAT
droEug1 scf7180000409672:7824393-7824621 - ATT-------------------------ATTT---TTATAAA--ACCT----------------TCCA--ATAGGAAAGTTATA--GACTGAA---AATTA---------AAATT----------------------------------------------------------------------------------------TTA---------TT--------------------------------------------------------------------------------------------------------------------ATT----------TATGTTA------------------GACAAAGA----CATTT--TTAATTTTTTATTA-------GACAA---A-----A------------------------ATCT----------------GTTTG---------------CA-AG-TTTAA-------------------------------CATTTAGAAAATACAATATTTATTAGGTTATTATTGA---------------------------AATACTCAATA----------------------------------------------AT-TTAGAA-----TT---A-A----GAAGGATAT----ATTAGAAGGAAGTGTTTCCAACCCTATAAAGTATA--------TAAAT
droBia1 scf7180000302291:42864-43071 - AAA-----------------------TTATTTTTCTGAAAAA--TAT------------------------TGAACAAAATCAACCGACTTAACACAATTT---------AAGT-------------------------------------------------------------------------------------------AAAGGAACAAAATAAGCCA--------------A-------------------------------------------------------------------------------------------------------------------------------------GCATAAG----CACTTAGC------------------------A---A-----A------------------------ATTA----------------ATTT-------------------------AA-----------------------------------------------GGTTT--GTA--------------------------ATTTTTATACGC-------------------------------TTGAAAA----------A---------TAATAATTTC--AGT---C-A----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATACATACATATAT
droTak1 scf7180000415786:134273-134499 - TATCG----------AAATGTAGAAGACATTTTTCAAATCGG--ACCA----------------TTCA--TTAAAAAGTTATACGCAA----------TCA---------AAAA----------------------------------------------------------------------------------------------------------------------------------------------------TTATATATCTATCTCCC---------------------------------------------------------------------------------------------TCGCACT----CCCTT---TA----GCTG-------AGTGACGG---G-----TATTAG-ATAGTCG----------------------------------GGACAACAACCCGACTATA-GC------------------------------------------------------GTTC----------TCT-----------------------------C-------------------------------TTGTTAA--------G-----------TATTGTATTC--GTG---C-A----AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATA--------TATAT
droEle1 scf7180000490579:493511-493797 + TAAAATCATCACGACCAAATGGAAACT--------AAATAAA--TCAT----------------CAAG--ATAAGCAGAATA-TGATATTAAAAATATTTG---------TA-----------------------ATTTTGTAAATATAATTAA-------------------------------------------------GTC---------------------------------------------------------------------------------------------------AACGTATAATAATGATAACAATTT-------ACTTTTCTGAAATATAAATA------------------------------------CGCATGTTATTG--------AAGG---ATTTGCCAAAATAATTACCAAATTAATCA------------------------------------------------AGCAA-----------------------------------------------CTGG--------------------------C-----TTTGTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAATTTC--AGT---C-A----GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATAT
droRho1 scf7180000778301:80360-80631 - ATGG----------CCGATGAGGGCATCGAGTTCCGCACGAA--TGTT----------------CA---------------------------------------------------------------------T-GTAG-------------GCAA---------------GGACCTCAAGGCCGAGCAGTTGCTGCAGGAGTGAGTATATAATT--------------------------------------------------------------------------------------------------------------------ATT----------TTGGTGC------------------TCAAAAAA----CATTTCCAAAACATTTTGAT----------CAA---A-----A------------------------ATTTGGGGTTTGCAGAAATTAT-------------------------TGAAAATTTTAA--------------------------------GACA---AGGTT------------------------TC-----CTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAATTTT--GGT---CAA----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATAT
droFic1 scf7180000448464:2436-2631 + CCCC-------------------------------------------------------------CTG--ATAGGGATGTTTAAATAAATTAATATTT-------------A-----------------------T-TTATATAATATAATTAA---------------------------------------------------------------TT------------------AACCACACAA------------------------------------------------------------------------------------------------------------------------------------------TTAAGTTA--------------------------------T------------------------TTTT----------------AATAT---------------------------------------------------------------------------TTT--GCATTTTATA-------------G-----TTAATTATACCC-------------------------------TTGCAGAGCAAATAGGTA---------TTATAATTTC--AGT---C-A----GAAATTTGCAACGCAGTGAAGGAGACATCTCAGACCCCCGAAAGTATA--------TATAT
droKik1 scf7180000302476:2766460-2766713 + GGA---------------------AATACTATTTCGCATTGG--TAAG----------------CT-----TAAGAGTTAGTAAGTAACTTATTAACATTG------------------------------------------------------------------------------------------------------------ATATTATTTT---------------------------------------------------------------------------------------------------------------------AT----------------------------------------T----TATTTATT--GTACACTGTACGCAAAGTTATTG---A-----TATTATTATTATTAAGTTAATCAAAATTC----------------A--TA---------------CA-AAATTCTTAATTTTAAGCTATAAATTCTAACAAGTTGAACCCTGAAGGGTTAC---------------AAA-------------AT-----ATTTTTATACCC-------------------------------TTGCAG--------GGTA---------TTATAATTTC--AGT---C---------------------------------------ACCCTATAAAGTATA----CATATATAT
droAna3 scaffold_13340:14662943-14663175 + ATC-----------------GGGAAATTT--------------------------------------------------------------TACATTTTTC---------CT-----------------------ATTT---------------------------------------------------------------------------------------------------------------------------------------------------GATACATATTTTCTA----AAGGTATAATAAA--------TCTTCTTAGT----------CATGTAAAAATGCATGTCAT-ATTGAACATATT----CATGGAGCTAGCA-GCGATTA--------GCGA---G-----G------------------------TGTT----------------AGTTG-------------------ACTGCAA-----------------------------------------------------------------------------C-----CTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAATTTT--GGT---C-A----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATAT
droBip1 scf7180000393763:46943-47158 - GAA---------------------ATTCATTTTTCACATTTA--ATTT----------------CTCG--ATC----TGGTCTTGCAACTCATTTGGCTTA---------AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTCATTTCTCACTCTAGCTCAGTTTTTACTAGAGAAACTGACC--------TAAA---T-----A------------------------GTTT----------------AT---------------------------CA-----------------------------------------------TG----------------------------G-----TTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTTTAATTTT--GGT---C-A----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATAT
dp5 Unknown_group_14:62843-63022 + AAGCATATCCGA----------------------------------------------------------------------------------CGCTTTA---------AAGT-----------G-------C---------------------------------------------------------------------ATATTTGCATACATAC------------------TA-------------------------------------------------------------------------------------------------------------------------------------GTATTAT----CATC--------------------------------------------------------------------------------------------------------------GCAC-----------------------------------------------TT--T------------------------GTATTTT------------TATACCCGATACTCAAAATGAGTATTGTTAT--ATTAT--------A-----------TATTAGATTT--GTGGT-GAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--------TATAT
droPer2 scaffold_16:1475521-1475701 + CAACC-------------------------------------------------------------------------------------CGATCT-TTTA---------ACTTC----------------------------------------------------------------------------------------TTACATACATA----T------------------AA-------------------------------------------------------------------------------------------------------------------------------------ACGAAAT----TATTTATTCCGTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTAAACACGGTTTT------------TATACCCGATACTCAAAAT-----------------GAGTATTGGGGTA---------TATTAGATTT--GTGGT-AAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--------TATAT
droWil2 scf2_1100000004513:1414669-1414915 - GGT----------------GAAAAAAACCTTTTTTACACTAC--ACTTATATATATAAGGCTA-ATCTG---------------TGAATCTATTTGATTTG---------GACAG----------------------------------------------------------------------------------------ACAAATAATAAATATAGACCACGAGTTCAAT------------------------------------------------------------------------------------------------------------------------------------------------T----TAATGAATTAATGCAATAATA--------AACA---A-----T------------------------TTTT----------------ATTCG---------------TTAACATT---------------------------------------------------------------------TT-----TTTCG-----GTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAAAATT--GGT---C-A----GATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATA--------TATAT
droVir3 scaffold_13045:1096725-1096950 + GAA---------------------AAACGTTTTTCTCATCCAAGATAT---------------TTTGG--TTTAGCACGGC------ATTTAAAGAATTCA---------AAAT-----------GCTCCCTTCAT-TTTT-------------GCAAAATCTTATTTACATCGGACTACTATATCGTATATCTGCCATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------G------------------------AACG----------------ATCTG---------------CCGAAAAGTAG-----------------------------------------------GTTTT--GGATTAAAAA-------------C-----CTTTTTATATCC-------------------------------TTGCAGAA------G---------------------------------------------AAGGAAGGAGAAGGAGACATCTCCGATCCCATGAAGTATA--------TATAT
droMoj3 scaffold_2702:361-610 + TAGCGGCATGACGCTTGATCGAGAAGTCGCGGTTCGAATCC-----CG----------------ATCGGTGCAACTAATATTAATTTTTTTAATTGTTTCAACATATTTTTTGT-------------------------------------------------------------------------------------------AT--------TT------------------------TCATAAATAAGTTTTCTATTT------------------------AATTTATA-------TTTTTAAATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCATACTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGGTTCAGGTT---C-A----AATGTATCTAATAGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTTTA--------TATAT
droGri2 scaffold_15126:5172550-5172736 + AAGAT----------------------TAAGGCTCAAACGG-------------------------------------------------------ATATT---------AAAGCATTTAAAATTG------------------------------------------------------------------------------------TATATTTTT------------------AACAACAAAA------A--------TCGTACATATATTGCATCTAATTA---------------TTTCCCAACCCAACGAAA------------------------------------------------------------------------------------------------A---T-----G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA--ATA---------GGGA---------TTAAGGTTTT--TTT-TGG-A----AATGTATATAATAGGCAGAAGGAAGCATCTCCGACCATGTAAAGTTTA--------TATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGA--TCCT----------------CTCG--GTAAGCAAGGTTAAGCAACTTAATCGATTTA---------AAGGC----------------------------------------------------------------------------------------GTATATATATAATTTT------------------AA-------------------------------------------------------------------------------------------------------------------------------------CCACAAT----CATTTACTTAGTATGCTGTTA--------ACGA---A-----A------------------------ATTC----------------ATTTG---------------CCGAAATGCAA-----------------------------------------------CGGTT--TTAGTTATTATCTT------------------------------------------------------------ATTAA-------------------AT-TTAGATTC--GTT---G-A----AAAGTATGTAACAGTCAGAAGGAAGCGTTTCCGACTATATAAAGTATA--------TATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AAAGTATGTAACAGTCAGAAGGAA.....................................2554.8024000000110922000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGCGTT................................2572.2916000100013110000000
.................................TCGCATCGA--TCCT----------------CTCG--GTAAGCAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000000000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------CCGAAATGCAA-----------------------------------------------CGGTT--TTAGTTA..................................................................................................................................................................................2511.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTA--------ACGA---A-----A------------------------ATTC----------------ATTTG---------------CCGAAA....................................................................................................................................................................................................................................................2611.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AAAGTATGTAACAGTCAG...........................................1980.75600006000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--GTT---G-A----AAAGTATGTAACAGTCAGA..........................................2730.67200000010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCAGAAGGAAGCGTTTCCGACTA........................2620.50100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--GTT---G-A----AAAGTATGTAACAGT..............................................2370.43300000000300000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AAAGTATGTAACAGTCAGAAGGA......................................2470.43300000011000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AAAGTATGTAACAGTCAGAAGGAAG....................................2650.40200000000001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--GTT---G-A----AAAGTATGTAACAGTC.............................................2430.33100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGAAGGAAGCGTTTCCGA...........................2230.33100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCAGAAGGAAGCGTTTCCG............................2330.33100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGTCAGAAGGAAGCGTT................................2270.29200000000000002000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGCGT.................................2470.29200000000011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTC--GTT---G-A----AAAG.........................................................16200.25500000000005000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTC--GTT---G-A----AAAGTATGTAACAGT..............................................2750.20100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGTCAGAAGGAAGC...................................2650.20100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AAAGTATGTAACAGTCAGAAGGAAGC...................................2750.20100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGC...................................22100.20200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCAGAAGGAAGCGTT................................2080.13100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAG....................................21100.10100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAAGCG..................................23100.10100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCGTTTCCGACT.........................21200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAA.....................................20110.09100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGG.......................................18130.08100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGA......................................19130.08100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AAAGTATGTAACAGT..............................................16160.06100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--GTT---G-A----AAAGTATGTAACA................................................21200.05100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACTATATAAAGT................23200.05100000000001000000
droSec2
TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGA--TCCT----------------CTCG--GTAAGCAAGGTTAAGCAACTTAATCGATTTA---------AAGGC----------------------------------------------------------------------------------------GTATATATATAATTTT------------------AA-------------------------------------------------------------------------------------------------------------------------------------CCACAAT----CATTTACTTAGTATGCTGTTA--------ACGA---A-----A------------------------ATTC----------------ATTTG---------------CCGAAATGCAA-----------------------------------------------CGGTT--TTAGTTATTATCTT------------------------------------------------------------ATTAA-------------------AT-TTAGATTC--ATT---G-A----AAAGTATGTAACAGTCAGAAGGAAGCGTTTCCGACTATATAAAGTATA--------TATATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACTATATAAA..................21200.0511000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACTATATAAAGT................23200.0511000
dm3
TAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATTGA--TCCT----------------CTCG--GTAAGCAAGGTTAAGCAACTTAATCGATTTA---------TAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTCTGGATTAACCCTAAC----CATTTACTTAGTTTTCTGTTT--------ACCA---A-----A------------------------AT------------------ATTTA---------------CCGAAATGCAA-----------------------------------------------CGGTT--TGAGTTATTATTTA-----TTTAAATTCA------------TTTACCCGTT----------------------------------------------------------------------------------------------------------ACTATATATAT-------ATATATATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................GA--TCCT----------------CTCG--GTAAGCAAGGTTAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATGCAA-----------------------------------------------CGGTT--TGAGTTATTATT.............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------CGGTT--TGAGTTATTATTTA-----TTTAAA................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................A---A-----A------------------------AT------------------ATTTA---------------CCGAAATGG.................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGCACCGCCACGGCAGATGGGGAAATCATTTTTCGCATCGA--TCCT----------------CTGG--GTAAGCAAGGTTAAGCCACTTAAGCGATTTT---------CAGAT----------------------------------------------------------------------------------------ATGTAT---GAAAG--------------------------------------------------------------------------------------------TATAAT------------------------------------------TTATTTCTTGATTAACTTTTAT----TATTGATTTTATACGCTGTTT--------ACGA---A-----A------------------------ATAC----------------TTTCG---------------ATGAAATGAAA-----------------------------------------------TGATT--TTAGTGTTTATCTG------------------------------------------------------------AT----------------------------------------------------------------------------------------------------------CAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCT------------------------------GTGTATTTA--TTTG----------------CTTT--GCAAGCAAGGCTGTGCATCTTGCGTCAAATA---------AACAA----------------------------------------------------------------------------------------C-----------TATAAACCAAGAATATTATTTGAA--------------------------------CAATAAGTGTAATTA---------------ATTCAAAAGCTGATAAAA------------------------------------------------------------------------------------------------G---------A------------------------GATC----------------ATTGG---------------CTAAA---CAA-----------------------------------------------TAGGT------------------------ATACTTT------------TATACCCGTTAC-------------------TCGTAGAGTAAAGGGGTA---------TACTAGATTC--GTT---A-T----AAAGCATGTAACAGGCAGAAGAAAGCGTTTTCGACCATATAAAATATA--------TATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTT------------TATACCCGTTAC-------------------TCGTAGAG.........................................................................................................2630.67200200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGAAAG....................................20200.10202000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAGAGTAAAGGGGTA---------TACTA.................................................................................23200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAGAGTAAAGGGGTA---------TACTAG................................................................................24200.05100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTTCGACCATATAA...................20200.05100000010000
droEug1
ATT-------------------------ATTT---TTATAAA--ACCT----------------TCCA--ATAGGAAAGTTATA--GACTGAA---AATTA---------AAATT----------------------------------------------------------------------------------------TTA---------TT--------------------------------------------------------------------------------------------------------------------ATT----------TATGTTA------------------GACAAAGA----CATTT--TTAATTTTTTATTA-------GACAA---A-----A------------------------ATCT----------------GTTTG---------------CA-AG-TTTAA-------------------------------CATTTAGAAAATACAATATTTATTAGGTTATTATTGA---------------------------AATACTCAATA----------------------------------------------AT-TTAGAA-----TT---A-A----GAAGGATAT----ATTAGAAGGAAGTGTTTCCAACCCTATAAAGTATA--------TAAATSizeHit CountTotal NormTotal
No Reads
droBia1
AAA-----------------------TTATTTTTCTGAAAAA--TAT------------------------TGAACAAAATCAACCGACTTAACACAATTT---------AAGT-------------------------------------------------------------------------------------------AAAGGAACAAAATAAGCCA--------------A-------------------------------------------------------------------------------------------------------------------------------------GCATAAG----CACTTAGC------------------------A---A-----A------------------------ATTA----------------ATTT-------------------------AA-----------------------------------------------GGTTT--GTA--------------------------ATTTTTATACGC-------------------------------TTGAAAA----------A---------TAATAATTTC--AGT---C-A----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATACATACATATATSizeHit CountTotal NormTotal
No Reads
droTak1
TATCG----------AAATGTAGAAGACATTTTTCAAATCGG--ACCA----------------TTCA--TTAAAAAGTTATACGCAA----------TCA---------AAAA----------------------------------------------------------------------------------------------------------------------------------------------------TTATATATCTATCTCCC---------------------------------------------------------------------------------------------TCGCACT----CCCTT---TA----GCTG-------AGTGACGG---G-----TATTAG-ATAGTCG----------------------------------GGACAACAACCCGACTATA-GC------------------------------------------------------GTTC----------TCT-----------------------------C-------------------------------TTGTTAA--------G-----------TATTGTATTC--GTG---C-A----AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATA--------TATATSizeHit CountTotal NormTotal
No Reads
droEle1
TAAAATCATCACGACCAAATGGAAACT--------AAATAAA--TCAT----------------CAAG--ATAAGCAGAATA-TGATATTAAAAATATTTG---------TA-----------------------ATTTTGTAAATATAATTAA-------------------------------------------------GTC---------------------------------------------------------------------------------------------------AACGTATAATAATGATAACAATTT-------ACTTTTCTGAAATATAAATA------------------------------------CGCATGTTATTG--------AAGG---ATTTGCCAAAATAATTACCAAATTAATCA------------------------------------------------AGCAA-----------------------------------------------CTGG--------------------------C-----TTTGTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAATTTC--AGT---C-A----GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATATSizeHit CountTotal NormTotal
No Reads
droRho1
ATGG----------CCGATGAGGGCATCGAGTTCCGCACGAA--TGTT----------------CA---------------------------------------------------------------------T-GTAG-------------GCAA---------------GGACCTCAAGGCCGAGCAGTTGCTGCAGGAGTGAGTATATAATT--------------------------------------------------------------------------------------------------------------------ATT----------TTGGTGC------------------TCAAAAAA----CATTTCCAAAACATTTTGAT----------CAA---A-----A------------------------ATTTGGGGTTTGCAGAAATTAT-------------------------TGAAAATTTTAA--------------------------------GACA---AGGTT------------------------TC-----CTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAATTTT--GGT---CAA----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATATSizeHit CountTotal NormTotal
No Reads
droFic1
CCCC-------------------------------------------------------------CTG--ATAGGGATGTTTAAATAAATTAATATTT-------------A-----------------------T-TTATATAATATAATTAA---------------------------------------------------------------TT------------------AACCACACAA------------------------------------------------------------------------------------------------------------------------------------------TTAAGTTA--------------------------------T------------------------TTTT----------------AATAT---------------------------------------------------------------------------TTT--GCATTTTATA-------------G-----TTAATTATACCC-------------------------------TTGCAGAGCAAATAGGTA---------TTATAATTTC--AGT---C-A----GAAATTTGCAACGCAGTGAAGGAGACATCTCAGACCCCCGAAAGTATA--------TATATSizeHit CountTotal NormTotal
No Reads
droKik1
GGA---------------------AATACTATTTCGCATTGG--TAAG----------------CT-----TAAGAGTTAGTAAGTAACTTATTAACATTG------------------------------------------------------------------------------------------------------------ATATTATTTT---------------------------------------------------------------------------------------------------------------------AT----------------------------------------T----TATTTATT--GTACACTGTACGCAAAGTTATTG---A-----TATTATTATTATTAAGTTAATCAAAATTC----------------A--TA---------------CA-AAATTCTTAATTTTAAGCTATAAATTCTAACAAGTTGAACCCTGAAGGGTTAC---------------AAA-------------AT-----ATTTTTATACCC-------------------------------TTGCAG--------GGTA---------TTATAATTTC--AGT---C---------------------------------------ACCCTATAAAGTATA----CATATATATSizeHit CountTotal NormTotal
No Reads
droAna3
ATC-----------------GGGAAATTT--------------------------------------------------------------TACATTTTTC---------CT-----------------------ATTT---------------------------------------------------------------------------------------------------------------------------------------------------GATACATATTTTCTA----AAGGTATAATAAA--------TCTTCTTAGT----------CATGTAAAAATGCATGTCAT-ATTGAACATATT----CATGGAGCTAGCA-GCGATTA--------GCGA---G-----G------------------------TGTT----------------AGTTG-------------------ACTGCAA-----------------------------------------------------------------------------C-----CTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAATTTT--GGT---C-A----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACATCTCC.............................27200.90180000018
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCAGTGAAGGAGACAT.................................26200.357700000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATCTCCGA...........................25200.255500000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACATC................................24200.153000003
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGAC...................................23200.153003000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GGT---C-A----AAAGTGTGCAACGC...............................................20200.153000030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGACATC................................26200.102200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------C-----CTTTTTATACCC-------------------------------TTGCAGAG------GGT................................................................................................25200.051010000
droBip1
GAA---------------------ATTCATTTTTCACATTTA--ATTT----------------CTCG--ATC----TGGTCTTGCAACTCATTTGGCTTA---------AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTCATTTCTCACTCTAGCTCAGTTTTTACTAGAGAAACTGACC--------TAAA---T-----A------------------------GTTT----------------AT---------------------------CA-----------------------------------------------TG----------------------------G-----TTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTTTAATTTT--GGT---C-A----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA--------TATATSizeHit CountTotal NormTotal
No Reads
dp5
AAGCATATCCGA----------------------------------------------------------------------------------CGCTTTA---------AAGT-----------G-------C---------------------------------------------------------------------ATATTTGCATACATAC------------------TA-------------------------------------------------------------------------------------------------------------------------------------GTATTAT----CATC--------------------------------------------------------------------------------------------------------------GCAC-----------------------------------------------TT--T------------------------GTATTTT------------TATACCCGATACTCAAAATGAGTATTGTTAT--ATTAT--------A-----------TATTAGATTT--GTGGT-GAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--------TATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GTGGT-GAAAATGGATGTGTG.....................................................22204.008008000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--GTGGT-GAAAATGGATGTG.......................................................21203.707400400000700
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GTGGT-GAAAATGGATGTGTGT....................................................23202.054103900000200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGA......................................21201.252502500000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACC.........................22201.152302300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATA--------T....25200.851701700000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGAC..........................21200.701401400000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGGT-GAAAATGGATGTGTGTAA..................................................24200.651301200100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--GTGGT-GAAAATGGATGTGT......................................................22200.601200120000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGGT-GAAAATGGATGTGTG.....................................................21200.50100000100900
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--GTGGT-GAAAATGGATG.........................................................19200.4590000009000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCC.......................20200.3570700000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------A-----------TATTAGATTT--GTGGT-GAAA................................................................21200.3060300000300
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAAGT................28200.2550050000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGT-GAAAATGGATGTGTGTA...................................................21200.1530000000300
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC.............................21200.1530300000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATA--------TATA.23200.1530000000300
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCCCATAAAGTAT..............20200.1020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--GTGGT-GAAAATGGATGTGTG.....................................................23200.1020000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--GTGGT-GAAAATGGATGT........................................................20200.1020000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGAA.....................................23200.1020000000020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGATGTGTGTAACG................................................20200.1020100000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAA...................21200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGATTT--GTGGT-GAAAATG.............................................................21200.1020000001010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--GTGGT-GAAAATGGATGTGTGTA...................................................26200.1020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGATGTGTGTAACGTC..............................................21200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATC...................................19200.0510010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCG..................................20200.0510000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTT--GTGGT-GAAAATGGATG.........................................................22200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-GAAAATGGATGTGTGTAAC.................................................21200.0510000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------TATACCCGATACTCAAAATGA...........................................................................................................................24200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCCCATAAAGTATA--------TAT..24200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGGT-GAAAATGGATGTGTGTAAC.................................................25200.0510000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTT--GTGGT-GAAAATGG............................................................23200.0510000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGT-GAAAATGGATGTG.......................................................18200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTT--GTGGT-GAAAATGGATGT........................................................25200.0510000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACC.........................23200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGA...........................21200.0510001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TATTAGATTT--GTGGT-GAAAATG.............................................................23200.0510000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GTGGT-GAAAATGGATGTGT......................................................21200.0510000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TATTAGATTT--GTGGT-GAAAA...............................................................21200.0510000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGGT-GAAAATGGATGTG.......................................................19200.0510000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTT--GTGGT-GAAAATGGAT..........................................................22200.0510000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--GTGGT-GAAAATGGATGTGTG.....................................................24200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGT-GAAAATGGATGTGTGTAA..................................................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTT--GTGGT-GAAAATG.............................................................22200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGGT-GAAAATGGATGTGT......................................................20200.0510000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT------------TATACCCGATACTCA.................................................................................................................................20200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------A-----------TATTAGATTT--GTGGT-GAAAATG.............................................................24200.0510000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-GAAAATGGATGTGTGTAAC.................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--GTGGT-GAAAATGGATGTT.......................................................21200.0510000100000
droPer2
CAACC-------------------------------------------------------------------------------------CGATCT-TTTA---------ACTTC----------------------------------------------------------------------------------------TTACATACATA----T------------------AA-------------------------------------------------------------------------------------------------------------------------------------ACGAAAT----TATTTATTCCGTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTAAACACGGTTTT------------TATACCCGATACTCAAAAT-----------------GAGTATTGGGGTA---------TATTAGATTT--GTGGT-AAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--------TATATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAT-----------------GAGTATTGGGGTA---------T.....................................................................................21200.204000004
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTT--GTGGT-AAAAGTG.............................................................20200.153030000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTA---------TATTAGATTT--GTGGT-AAAAG...............................................................24200.102020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAAAAT-----------------GAGTATTGG...................................................................................................19200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTT--GTGGT-AAAAGT..............................................................21200.102002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGATACTCAAAAT-----------------GAGTATTGG...................................................................................................26200.051010000
droWil2
GGT----------------GAAAAAAACCTTTTTTACACTAC--ACTTATATATATAAGGCTA-ATCTG---------------TGAATCTATTTGATTTG---------GACAG----------------------------------------------------------------------------------------ACAAATAATAAATATAGACCACGAGTTCAAT------------------------------------------------------------------------------------------------------------------------------------------------T----TAATGAATTAATGCAATAATA--------AACA---A-----T------------------------TTTT----------------ATTCG---------------TTAACATT---------------------------------------------------------------------TT-----TTTCG-----GTTTTTATACCC-------------------------------TTGCAGAG------GGTA---------TTATAAAATT--GGT---C-A----GATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATA--------TATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCC.......................25200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGCACAGAAGGAGACGTTTCCGA...........................26200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGGAGACGTTTCCGACCCCA......................25200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT--GGT---C-A----GATGTTTGTAACGCA..............................................25200.05101000
droVir3
GAA---------------------AAACGTTTTTCTCATCCAAGATAT---------------TTTGG--TTTAGCACGGC------ATTTAAAGAATTCA---------AAAT-----------GCTCCCTTCAT-TTTT-------------GCAAAATCTTATTTACATCGGACTACTATATCGTATATCTGCCATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------G------------------------AACG----------------ATCTG---------------CCGAAAAGTAG-----------------------------------------------GTTTT--GGATTAAAAA-------------C-----CTTTTTATATCC-------------------------------TTGCAGAA------G---------------------------------------------AAGGAAGGAGAAGGAGACATCTCCGATCCCATGAAGTATA--------TATATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................TGCCATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------G------------------------AACG----------------ATCTG---------------CC........................................................................................................................................................................................................................................................2020.501000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TTTACATCGGACTACTATATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.408000000000000000000000000030000000050000000000000000000000000000
.........................................................................................................................................TTTT-------------GCAAAATCTTATTTACATCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.306000000000000000000000000000004100000100000000000000000000000000
......................................................................................................................................................................TTACATCGGACTACTATATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.204000000002000000000000000000000000000101000000000000000000000000
................................................................................................................................................................TCTTATTTACATCGGACTACTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204000000000000000000001000030000000000000000000000000000000000000
......................................................................................................................................................................TTACATCGGACTACTATATCGTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................TCTTATTTACATCGGACTACTATATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102001000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................AATCTTATTTACATCGGACTACTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................AAAATCTTATTTACATCGGACTACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000000000010010000000000000000000000000000
.................................................................................................................................................................CTTATTTACATCGGACTACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000020000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTATTTACATCGGACTACTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000000010000010000000000000000000000000000
.....................................................................................................................................................................TTTACATCGGACTACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000020000000000000000000000000000000000000
..............................................................................................................................................................AATCTTATTTACATCGGACTACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................TTTT-------------GCAAAATCTTATTTACATCGGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................TTTACATCGGACTACTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................T-TTTT-------------GCAAAATCTTATTTACATCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................T-------------GCAAAATCTTATTTACATCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................TGCCATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------G------------------------AACG----------------ATCTG---------------..........................................................................................................................................................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................TCTTATTTACATCGGACTACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................TTATTTACATCGGACTACTATATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................AT-----------GCTCCCTTCAT-TTTT-------------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
TAGCGGCATGACGCTTGATCGAGAAGTCGCGGTTCGAATCC-----CG----------------ATCGGTGCAACTAATATTAATTTTTTTAATTGTTTCAACATATTTTTTGT-------------------------------------------------------------------------------------------AT--------TT------------------------TCATAAATAAGTTTTCTATTT------------------------AATTTATA-------TTTTTAAATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCATACTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGGTTCAGGTT---C-A----AATGTATCTAATAGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTTTA--------TATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................TCGAGAAGTCGCGGTTCGAATCC-----CG----------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.10220000220
.........................................................................................................................................................................................................................................................................................................................TCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCATACT..................................................................................................................................................................................................................................................25200.60121200000
.....................................................................................................................................................................................................................................................................................................................TACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCAT.....................................................................................................................................................................................................................................................26200.357000070
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGG...............................................................................25200.255300002
....................................................................................................................................................................................................................................................................................................................ATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCC.......................................................................................................................................................................................................................................................25200.204400000
.........................................................................................................................................................................................................................................................................................................................TCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCATACTA.................................................................................................................................................................................................................................................26200.153000030
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGG...............................................................................28200.153300000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGCAGAAGGAGGCGTGGC..............................21200.153000030
...........................................................................................................................................................................................................................................................................................................................GAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCC.......................................................................................................................................................................................................................................................18200.102000020
....................GAGAAGTCGCGGTTCGAATCC-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
.......ATGACGCTTGATCGAGAAGTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
....................................................................................................................................................................................................................................................................................................................ATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GC........................................................................................................................................................................................................................................................24200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGG................................................................................25200.051100000
...............................................................................................................................................................................................................................................................................................................TTTAAATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTT..........................................................................................................................................................................................................................................................................26200.051000010
.......ATGACGCTTGATCGAGAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
....................GAGAAGTCGCGGTTCGAATCC-----CG----------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGG...............................................................................26200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGG...............................................................................21200.051100000
.................ATCGAGAAGTCGCGGTTCGAATCC-----CG----------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCAGACCCCATAAAGT................20200.051100000
...............TGATCGAGAAGTCGCGGTTCGAATCC-----CG----------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.................................................................................................................................................................................................................................................................................................................TAAATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GC........................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------------------------------------GGCATTTTTATTAG-TTGGGTTCAG..........................................................................25200.051100000
...........................................................................................................................................................................................................................................................GTTTTCTATTT------------------------AATTTATA-------TTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.......................AAGTCGCGGTTCGAATCC-----C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCGTGGCAGACCCC.......................21200.051000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGCATTTTTATTAG-T...................................................................................24200.051100000
....................................................................................................................................................................................................................................................................................................................ATACATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCATAC...................................................................................................................................................................................................................................................29200.051100000
...........................CGCGGTTCGAATCC-----CG----------------ATCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
............................GCGGTTCGAATCC-----CG----------------ATCGGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTA---------------GCCATACTAAA-----------------------------------------------TG-------------------------------------------------------------------------------------------GGC................................................................................................21200.051100000
...................CGAGAAGTCGCGGTTCGAATCC-----CG----------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
........................................................................................................................................................................................................................................................................................................................ATCGAAA------------------------------------------------------------------------------------------------TTGAA-----A--------------------------------------------TTTTA---------------GCCATA....................................................................................................................................................................................................................................................24200.051000010
.........GACGCTTGATCGAGAAGTCGCGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGGCAGAAGGAGGCGTGG...............................22200.051000010
droGri2
AAGAT----------------------TAAGGCTCAAACGG-------------------------------------------------------ATATT---------AAAGCATTTAAAATTG------------------------------------------------------------------------------------TATATTTTT------------------AACAACAAAA------A--------TCGTACATATATTGCATCTAATTA---------------TTTCCCAACCCAACGAAA------------------------------------------------------------------------------------------------A---T-----G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA--ATA---------GGGA---------TTAAGGTTTT--TTT-TGG-A----AATGTATATAATAGGCAGAAGGAAGCATCTCCGACCATGTAAAGTTTA--------TATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:52 AM