ID:

dsi_2970

 Coordinate:

3l:7488112-7488261 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.6 -43.1 -42.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATCATTTCTATGAGTTTCACTTTTCAGCGCTGTGAATGGGGAATTGGAAATTGGGGTGGAGACGCTGATGACGATCATGATTGTGATTATGATGAAGTGGAACATGGCAATGGGGAACCTTGGCCTGGCGCGTGGGCTTGTTTACAGCGAGTTGAAGGTTTCCCACTCATTTTCTTGCTTTGATGTCCTATTTTTTAAGGTCACCTCATGGCTGGGCAGCGATGGAGCGGAGAATTTGCAAAAGTTTTC
**************************************************(((((.((....)).)))))....((((((((....))))))))(((((((.((((((((((((((((((((...((.((..((((......)))).)).))...))))))))))).........)))))...)))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 GSM343915
embryo
 SRR1275483
Male prepupae		 O002
Head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR1275485
Male prepupae		 SRR902008
ovaries
..................................................................................TGTGATGATGACGTAGTGGAAC.................................................................................................................................................. 22 3 2 74.50 149 49 61 37 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................TGTGATGATGACGTAGTGGAACA................................................................................................................................................. 23 3 2 74.00 148 75 34 37 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................TGTGATGATGACGTAGTGGAA................................................................................................................................................... 21 3 5 15.60 78 33 21 23 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................GAGCGGAGAATTTGGACAA...... 19 2 3 9.67 29 0 0 0 12 5 3 4 2 0 2 0 0 0 1 0
..................................................................................................................................................................................................................................AGCGGAGAATTTGGACAA...... 18 2 9 7.78 70 0 0 1 41 5 12 1 7 0 0 0 0 3 0 0
.................................................................................................................................................................................................................................GAGCGGAGAATTTGGACA....... 18 2 7 6.14 43 0 0 0 10 16 6 1 6 0 3 0 1 0 0 0
..................................................................................TGTGATTGTGACGTAGTGGAAC.................................................................................................................................................. 22 3 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGTGAATGGGGAATTGGAAATTGGG.................................................................................................................................................................................................. 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGAGCGGAGAATTTGGACAA...... 20 3 20 1.70 34 1 0 0 13 4 6 4 5 0 1 0 0 0 0 0
....................................................................................TGATTGTGACGTAGTGGAACA................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACAGCGAGTTGAAGGTTTCCCACT.................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGCGAGCTGTAGGTTTCCTACT.................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGCAGCGATGGAGCGGA.................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................TGTGATTGTGACGTAGTGGAACA................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGTGATGATGACGTAGTGGA.................................................................................................................................................... 20 3 10 0.70 7 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CCCGTGGGCTGGTTTAGAGC..................................................................................................... 20 3 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGATTGTGACGTAGTGGAAC.................................................................................................................................................. 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GGAGCGGAGAATTTGGACAA...... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAGCGGAGAATTTGGA......... 16 1 8 0.50 4 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0
..................................................................................TGTGATGATGACGTAGTGGAACAT................................................................................................................................................ 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGGAACCTTGGGCT........................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TGTGATTGTGACGTAGTGGAA................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGCGGAGAATTTGGACA....... 17 2 20 0.30 6 1 0 0 0 0 0 2 0 0 1 0 2 0 0 0
................................................................................................................................................................................TGCTTTGACTACCTATTTTTTA.................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................GTGATGATGACGTAGTGGAACA................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TGACGATCATGCTTGCG.................................................................................................................................................................... 17 2 10 0.20 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGCAATGGAGCGGAG................. 15 1 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGTAGCGGTGAATTTCCAAA....... 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GCGGAGAATTTGGAA........ 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................CATCGCTGGGTAGCTATGG........................ 19 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GCGGAGAATTTGACAAACTT... 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GCTTTGATGAGCTATTT........................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GTTGGGGACGCTGAGGAC................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCAGCGAGGGAGCGGGGA................ 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTCCTATTTTTCGAGG................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................TGCTTTGATTACCTATTGTT...................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CTAGTAAAGATACTCAAAGTGAAAAGTCGCGACACTTACCCCTTAACCTTTAACCCCACCTCTGCGACTACTGCTAGTACTAACACTAATACTACTTCACCTTGTACCGTTACCCCTTGGAACCGGACCGCGCACCCGAACAAATGTCGCTCAACTTCCAAAGGGTGAGTAAAAGAACGAAACTACAGGATAAAAAATTCCAGTGGAGTACCGACCCGTCGCTACCTCGCCTCTTAAACGTTTTCAAAAG
**************************************************(((((.((....)).)))))....((((((((....))))))))(((((((.((((((((((((((((((((...((.((..((((......)))).)).))...))))))))))).........)))))...)))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................TGTCGATCAACTTCCACAGGTT.................................................................................... 22 3 3 0.67 2 2 0 0
.............................................................................................................................................................CCAAAGGGGGAGTATAAG........................................................................... 18 2 5 0.20 1 0 1 0
...............................ACACGTACCCCTTAAACT......................................................................................................................................................................................................... 18 2 13 0.08 1 0 1 0
....TAAAGAAACTCAAAGT...................................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:20 AM