ID:

dsi_29694

 Coordinate:

3r:1024918-1025091 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAATTGTTTTAATAACTTGCTTTTTGTTTTTTGCGTTTTTATTTTCATATTTTGACCACGCCACGCCAAAAACCCTACCCATAAATGCAATTTGTGTTAATAAACCAACCGCTTTACACCAAAACCCATAACACATCGCACCCCCAAAAACCACTTGTACATAAATCTGTGTGTGTGCCGCGCCCCCAAATATTACTCAGCTATTGTTTGTCTAATTCTCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTTACCGTGGACAGTG
**************************************************........((((((((...................(((....(((((((.............................)))))))..)))..................(((((....))))))))))..)))....((((((.((......)).))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................................................................................CGTAAGATGAGGGCGACA........................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCTAATTCCCGAAGATCCTCGGAA........................................ 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................CTCGGAAGATGAGGGCGACAACGA....................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................ATCCTCGGAAGATGAGGGCGACAACGAGT..................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTCGAAGATCCTCGGAAGATGAGGGC............................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGAAGATCCTCGGAAGAT..................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................ATTTTCATATTTTGACCACG...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................ATTGTTTGTCTAATTCCCGA.................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................CTAATTCTCGAAGATCCTCGGA......................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GATCCTCGGAAGATGAGGGC............................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................AACGTTACCGTGGACAGTG 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................AACGAGTCTAACGTTACCGTGGAC.... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATTGTTTGTCTAATTCTCGAAGATCCTC............................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCGGAAGATGAGGGCGACAACGAGTCC................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAGT..................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CAAGGAGTCTAACGT.............. 15 1 3 0.33 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................GGAAGATGAGGGCGA............................. 15 0 4 0.25 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................GGGGACAAGGAGTCTAACA............... 19 3 10 0.20 2 0 0 0 0 0 0 0 0 2
.....................................................................AAACACTACCCATAAATGCTG........................................................................................................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGTAGATACTCGGAAGA...................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................CTCCCAAGTATTGCTCAGCT........................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
..............................................................ACGCGAAAAACCTTACC................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................GGGTGATAACGAGTCT................... 16 2 18 0.06 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................CAAGGAGTCTAACGTC............. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATTAACAAAATTATTGAACGAAAAACAAAAAACGCAAAAATAAAAGTATAAAACTGGTGCGGTGCGGTTTTTGGGATGGGTATTTACGTTAAACACAATTATTTGGTTGGCGAAATGTGGTTTTGGGTATTGTGTAGCGTGGGGGTTTTTGGTGAACATGTATTTAGACACACACACGGCGCGGGGGTTTATAATGAGTCGATAACAAACAGATTAAGAGCTTCTAGGAGCCTTCTACTCCCGCTGTTGCTCAGATTGCAATGGCACCTGTCAC
**************************************************........((((((((...................(((....(((((((.............................)))))))..)))..................(((((....))))))))))..)))....((((((.((......)).))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................ATTTGGCGGGCGAAGTGTGGT......................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................GAACAGGTATTTAGAGACACTC................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................ACGGCGCCGGGGTTTAT.................................................................................. 17 1 2 0.50 1 0 0 0 1 0 0
.....................................................................TTTGGGCTAGGTCTTTACGTT........................................................................................................................................................................................ 21 3 7 0.43 3 3 0 0 0 0 0
........................................................................GGGATGGGTATTCCCGGTA....................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 1 0
...............................................................................................................................................................................................................................CCAGGAGCCTTCTAC.................................... 15 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................AATAGCTTCTAGGAG............................................ 15 1 8 0.13 1 0 0 1 0 0 0
......................................................................TCGGGATGGGTATTT............................................................................................................................................................................................. 15 1 10 0.10 1 0 0 1 0 0 0
......................................................................................................................................................................................................................TAACGGCTTCTAGGAGC........................................... 17 2 20 0.10 2 0 0 2 0 0 0
............................................................................................................GGCGAATTGTGGTCTTG..................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1
..................AGAAAAACAAAAAACGC............................................................................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 1 0
.................................................................................................................AATGTGGTTATGGGT.................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................................................................TAATGGCTTCTAGGAG............................................ 16 2 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................TATGGTCTAGCGTGGG................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................................................ATAACGAGTCGATATCTAA................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
....................................................................................................................................................................................GCGGGGGTTCATCATG.............................................................................. 16 2 20 0.05 1 0 0 0 1 0 0
...................................................................ATGTTGGGATGGGTAT............................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1024868-1025141 - dsi_29694 TAATTGTT---------TTAATAACTTG-CTTTTTG------T-TTTTTGCGTTTTTATTTTCATAT-TTT------GA----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAAAC-CCATAAC---ACA--------------------------TCGCACCCCCAA------------------------------------------------------------------------------------AAAC----CACTTGTACATA----AATC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C---------------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCTCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTTACCGTGGACAGTG
droSec2 scaffold_6:1241883-1242156 - TAATTGTT---------TTAATAACTTG-CTTTTTG------T-TTTTTGCGTTTTTATTTTCATAT-TTT------GA----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAAAC-CCATAAC---ACA--------------------------TCACACCCCCAA------------------------------------------------------------------------------------AAAC----CACTTGTACATA----AATC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C---------------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTTACCGTGGACAGTG
dm3 chr3R:1120528-1120799 - TAATTGTT---------TTAATAACT-G-CTGTTTG------T-TTTTTGCGTTTTTATTTTCATAT-TTT------GA----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTT-AT-AAACCAACC-GCTTTACA-------------C------------CAAAAC-TCATAAT---ACC--------------------------TCACACCCCCAA------------------------------------------------------------------------------------AAAC----CACTTGTACATA----AATC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C----------------C-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCAAACGTTACCGTAGACAGTG
droEre2 scaffold_4770:1395317-1395590 - TAATTGTT---------TTAATAACTTG-CTGTTTT------T-TTTTTACGTTTTTATTTTCATAT-TTT------GT----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAA-CACC-TATT---ACA--------------------------TCACACCCCCAA----------------------------------AA---------------------------------------------------CCACTTACTTGTACATA----AATC-------------T----------------------------------GTATGGT--------------CCGCGC-----------A---------------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTAACCGTGGACAGCG
droYak3 3R:1500515-1500785 - TAATTGTT---------TTAATAACTTG-CTGTTTGTTC---TTTTTTTGCGTT-TTATTTTCATAT-TTT------GA----CTACGCTACGCCAAAA-------A-------CC----ATACCTAT-AATTGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAA-CACC-TATC---GCA--------------------------TTACACCCCCAA---------------------------------------------------------------------------------------C----CACTTGTACATA----AATC-------------T----------------------------------GTGTGTG--------------CCGCGC-----------A---------------CC-AAAATATTACTCAGCTATTGTTTGTCTAATTTCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTAACCGTGGACAGCG
droEug1 scf7180000409766:29590-29866 - TAATTGCT---------TTAATAACTTT-ATGTTTG------TATTCTTGTGTTTTTACTTTCATAT-TTC------GAA---CCACGCCACGCCAAAA-------A------ACC----CTACCCAT-ATATGCAATT--------------TGTGTTATAT-AAAACAACC-GCTTTACA-------------C------------CAAA-CCCC-TGTC---ACA--------------------------TCACACCCACAA----------------------------------ACC------------------------------------------------ACC----TCCTTGTACATA----ATTC-------------T----------------------------------GTGTGTG--------------CCACGC-----------C---------------CA-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAATGTGACCGTGGACAGCG
droBia1 scf7180000302411:872404-872673 - TAATTGCC---------TTAATAACTTT-CTGTTTG------TATTCTTGTGTTTTTACTTTCATAT-TTC------GAA---CCACGCCCCGCCAAAC---------------CT----TCACCCAT-AAATGCAATT--------------TGTGTTA-TC-AA----ACC-GCTTTTCA-------------C------------CAAA-CTCC-AATC---ACA--------------------------TCAAACCCACAA----------------------------------ACT------------------------------------------------TGC----CTCTTGTACAAA----AACC-------------T----------------------------------GTGTGTG--------------CCTCGC-----------C---------------CC-CGAATATTACTCAGATATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAACATTACCGTGGACAGCG
droTak1 scf7180000415789:268985-269257 + -ATTTGCC---------CTAATAACTTT-CTGTTTG------TATTCTTGTGTTTTTATTTTCATAT-TTC------GAT---CCACGCCACGCCAAAA-------C-------CC----CCACCCAT-AAATGCAATT--------------TGTGTTA-TC-AAACCAACC-GCTTTACA-------------C------------CAAA-CCCC-AATC---ACA--------------------------TCACACCCACAA----------------------------------AA-------------------------------------------------TCC----CTCTTGTACATA----AATC-------------T----------------------------------GTGTGTG--------------CCACGC-----------C---------------CC-CGAAAATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAACGTAACCGTGGACAGCG
droEle1 scf7180000491021:362426-362708 + CAATTGCT---------TTAATAATATT-TTGTTTG------TATTCTTGTGTTTTTATTTTCATAT-CTC------AAA---CCACGCCACGCCAATA---------------CC----CTACCCAT-AAATGCAATT--------------TGTGTTT-TCAAAACCAACC-GCTTTTTA-------------CAC----------CAAA-CCTT-T--C---ACAAC------------------------TCACACCCACAA----------------------------------ACC-----------------------------------------------ACAC----CACTTGTACATATGTAAATC-------------T----------------------------------GTGTGTG--------------CCACGC-----------C-----C---------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAGGACGAGGCCGACAACGAGTCCAATGTGACCGTGGACAGTG
droRho1 scf7180000777277:5404-5666 + TAATTGCT---------TTAATAACTTT-CTGTTCG------TATTCTTGTATTTTTATTTTCATAT-TTC------GAA---CCACGCC-------------------------------TTACCAT-AAACGCAATT--------------TGTGTTA-TC-AAACCAACC-GCTTTACA-------------C------------CAAA-CCCC-TCAC---ACA--------------------------TCACACCCACAA----------------------------------ATC----------------------------------------------AACCC----CACTTGTACATA----AATC-------------T----------------------------------GTGTGTG--------------CCACGT-----------C----------------C-CAAATATTACTCAGCTATTGTTTATCTAATTCCCGAAGATCCTCGGAGGACGAGGCCGACAACGAGTCCAACATAACTGTGGACAGCG
droFic1 scf7180000453850:497710-497997 - TAATTGCT---------TTAATAACTTT-CTGTTTG------TATTCTTGTGTTTTTATTTTCATAT-CTT------GAA---CCACGCCACGCCAAAA---------------CC----CCAACCAT-TTTTGCAATT--------------TGTGTTA-TCAAAAACAACC-GCTTTACA-------------C------------CAAA-CCCC-AAAC---ACA--------------------------TCACGCCCACAC----------------------------------AACCGCAAAA------------------------------------CCAAAAAC---CCACTTGTACATA----ATTC-------------T----------------------------------GTCTGTG--------------CCACGC-----------C---------------CC-CAAATATTACTCAGCTATTGTTTGTCTACTTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAACGTGACCGTGGACAGCG
droKik1 scf7180000302461:535792-536076 - TTATTGCCTTAA----GTTAATAACTTTTATGTTTG------TATTCTTGTGTTTTTATTTTCATAT-TTC------GAA---CCACGCCACGCCAAAC---------------CC----CTTACCAT-AAACGCA-----------------------------AACCAAAC-GCTTTACA-------------CAC----------CAAA-ACCC-TCCCTTTACA--------------------------TTACACCCACAA----------------------------------CA-----------------------------------------------AAACC----CACTTGTACATA----AATCT--A-TGTGTCTATG--------------------------------TGTGTGTG--------------CCACGC-----------C---------------AA-CAAATATTACTCAGCTATTATTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCGGATAACGAGTCGAACATAACGGTGGATAGCG
droAna3 scaffold_13340:23302866-23303191 - TATTTGCG---------TTAATAATTT---TGTTTG------TATTTTTGTGTTTTTATTTTCATAT-TTC------GAA---CCACGCCACGCCAAAA-------A-------CC----CTTACCAT-AACTGCAATC--------------TGTGT-A-TA-AAACCAACC-GCTTTATCCAAAACAAATAAACAC----------CAAA-CCCA----------A--------------------------TCACACCCACAA----------------------------------AC--GCAAAAATTACTCATCACCTCCACAAACAAAACCAAACCAATCCAAAAAC----CACTTGTACATA----AT---------------TG--------------------------------TGTTCGTG--------------ACACAC-----------C----------------C-CGTATGTTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATCACCGTGGACAGCG
droBip1 scf7180000396395:306136-306448 - TATTTACG---------TTAATAATTT---TGTTTG------TATTTTTGTGTTTTTATTTTCATAT-TTC------GAA---CCACGCCACGCCAAAC-------A-------CC----CTTACCAT-AACTGCAATC--------------TGTGTTATATAAAACCAACC-GCTTTATCCGAAACAAATAAACAC----------CAAA-CCCA-T-----------------------------------TCACACCCACAA----------------------------------AC--ACAAAAACTACTCATCCCCCCCACAAA---------------CCAAAAAC----CACTTGTACATA----AT---------------TG--------------------------------TGTTCGTG--------------ACACAC-----------C------------------CGAATGTTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGGCGACAACGAGTCCAACATCACCGTGGACAGCG
dp5 2:21664905-21665206 + TTGTTGCTTTATGCTTGTTAATAACTTT-CTGTTTG------TATTTTTGTGTTTTTATTTTCATATATTC------GAC---CCACGCCACGCCTTAA-------A--------A----CTAATCAT-AAACGCAATT--------------TCTGTTA-TC-AAACCAAAT-GCTTTACA-------------C------------AACAAA-CGAAAA----ACAACCG----CACACCA------------CACACCCA-----------------------------------------------------------------------------------------------CATTTGCACACACGAAAACACCAACCACATATCT----------------------------------GTGTGTG--------------CCCTGC-----------A---------------CG-AACATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATCACTGTGGATAGCG
droPer2 scaffold_3:4449721-4450034 + CTGTTGCTTTATGCTTGTTAATAACTTT-CTGTTTG------TATTTTTGTGTTTTTATTTTCATATATTC------GAC---CCACGCCACGCCTTAA-------A--------A----CTAATCAT-AAACGCAATT--------------TCTGTTA-TC-AAACCAAAT-GCTTTACA-------------C------------AACAAA-CGATAA----ACAACCG----CACACCGCCCACCACACACCACACCCA-----------------------------------------------------------------------------------------------CATTTGCACACACGAAAACACCAACCACATATCT----------------------------------GTGTGTG--------------CCCTGC-----------A---------------CG-AACATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATCACTGTGGATAGCG
droWil2 scf2_1100000004943:12807571-12807936 + TAATTGTT--------ATTAATAATTAT-CTGTTTGTTTTTCT-CATTTTTGTTTTTATTTTCATAT-GTGTTTATTGAAAAAC--TTCAACGACCAAATCCGAAAACTAAAATATTGTCAATCCCATCATATGCAATTTGGCTATATCCATATGTGTTACTT-AC----AAT-GCTTCACA-------------C------------AATCCA-C---AAC---A------------------------------------CC-AATCCACCTAAATGTTCCTACCTTGTATATTTCAAACT-----------------------------------------------C-------CA-----TCATCCGCAAATCCGCATCGCAAATCTT----TCTGTGCATTTTTGTTGTTCCCTTGTGT-TTATGTG-----------------------------------------------------AAATTACTCAGCTATTATTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGGCGACAATGAATCAAACATAACCGTCGACAGCG
droVir3 scaffold_12855:7792020-7792295 + dvi_4386 --ATTGCT--------GTTAATAATTTG-TTATTCTACA---TTTTTTTGTGCTTTTATTTTCATAT-TTT------AAA---C--CGCAACGTTC----CCTCAAT---AAACAC----ATAACCAT-ACTTGCCATT--------------TGTGC------------------CTTACA-------------AA-----------CACA-CACC-T--------C--------------------------TCACACCCACAA----------------------------------AC-------------------------------------------------------------GCACACACGTGAACC-------TGCA--TCTGTTA------------------------------CTGTA--AATTCCCACACACTG--CAC---------A---------------CTCCAA---ATACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATTACCATAGACAGCG
droMoj3 scaffold_6540:23012384-23012713 + TA----TT---------TTAATAATTTG-TTGTACAACCTTCT-TTTTTGTGTTTTTATTTTCATAT-TTG------TA----AACTGCAACGTTT----CCTCAAAATAAAATAC----ATACCCAT-A----TCATT--------------TGTGCTTCGT-AAACAAACACG---AACA-------------CCAACATCAACACCAAA-ACCA-AAAC---ACACCTGAACACACAACA------------CACACACA-----------------------------------------------------------------------------------------------CACCTGCACACGCGC--------A-CGCGTATTTG--TAACTGTACCCGTCACCTGTTACC---TGT-TAATGCACCAAT-----------ACG-----------------------------C-CA---AATACTCAGCTATTATTTGTCTAATTCCCGAAGATCATCGGATGACGAGGCCGACAACGAGTCCAACCTAACGGTCGACAGCG
droGri2 scaffold_15074:4345458-4345710 + T-------------------------------------------TCTTTGTGTTTTTACTTTCATAT-CTC------AAA---C--TGCAACGTCAAAA----------------------------C-ATATGCAATA--------------TATGTTA-TT-TC-----AC-GCTTTACA-------------C------------ACAC----------------------------------------------ACACACAAACACAC----------------------------G-C----------------------------------------------ACACA----CACTTGTA---------ATT-------------TG--TAA------------------------------CTGTA--AATACGCACAAACTG--TACACACTCTGCACCCCTCCCCAACCAACC----AAAATACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACTTGACGATCGATAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAATTGTT---------TTAATAACTTG-CTTTTTG------T-TTTTTGCGTTTTTATTTTCATAT-TTT------GA----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAAAC-CCATAAC---ACA--------------------------TCGCACCCCCAA------------------------------------------------------------------------------------AAAC----CACTTGTACATA----AATC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C---------------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCTCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTTACCGTGGACAGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAAGATGAGGGCGACAACGA.......................2411.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGGAAGATGAGGGCGACAACGAGT.....................2911.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAAGATCCTCGGAAGATGAGGGC...............................2611.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATCCTCGGAAGAT.....................................1811.00100000010000000000
.........................................................ATTTTCATAT-TTT------GA----CCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTCTCGAAGATCCTCGGA.........................................2211.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTCGGAAGATGAGGGC...............................2011.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTACCGTGGACAGTG1911.00100000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTCTAACGTTACCGTGGAC....2411.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTGTCTAATTCTCGAAGATCCTC............................................2811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGATGAGGGCGACAACGAGTCC...................2711.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAGT.....................2211.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGATGAGGGCGA.............................1540.25100000010000000000
droSec2
TAATTGTT---------TTAATAACTTG-CTTTTTG------T-TTTTTGCGTTTTTATTTTCATAT-TTT------GA----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAAAC-CCATAAC---ACA--------------------------TCACACCCCCAA------------------------------------------------------------------------------------AAAC----CACTTGTACATA----AATC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C---------------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTTACCGTGGACAGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCTAACGTTACCGTGGA.....2211.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGAAGATGAGGGCGACAACG........................2511.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACGA.......................1911.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGT.....................2011.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGA.......................1811.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACGAGT.....................2111.0010001
dm3
TAATTGTT---------TTAATAACT-G-CTGTTTG------T-TTTTTGCGTTTTTATTTTCATAT-TTT------GA----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTT-AT-AAACCAACC-GCTTTACA-------------C------------CAAAAC-TCATAAT---ACC--------------------------TCACACCCCCAA------------------------------------------------------------------------------------AAAC----CACTTGTACATA----AATC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C----------------C-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCAAACGTTACCGTAGACAGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGAAGATCCTCGGAAGATGAGGGC...............................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACGTTACCGTAGAC....1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAAGATCCTCGGAAGATGAGGGC...............................2714.0040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGT.....................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAAGATCCTCGGAAGATGAGG.................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTCGGAAGATGAGGGC...............................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCGACAACGAGTCAAACGT..............2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGTCAAACGT..............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGT.....................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAAGATGAGGGCGACAAC.........................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAGTCA...................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAACGAGTCAAACGTTACC..........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGACAACGAGTCAAACGT..............2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGATCCTCGGAAGATGAGGGCG..............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGATGAGGGCGACAACGAGT.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGCGACAACGAGTC....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGTCA...................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGACAACGAGTCAAAC................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGATCCTCGGAAGATGAGGGCGAC............................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGGAAGATGAGGGC...............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCTCGGAAGATGAGGGC...............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTTGTCTAATTCCCGAAGATC...............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGCGACAACGAGTCAAAC................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................TGTGTTT-AT-AAACCAACC-GCTTTACA-------------C------------...........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTAATTCCCGAAGATCCTCGGAAGA......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATCCTCGGAAGATGAGGGC...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGTCAAACGTT.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGTCAAACGTTACCGTAGAC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCTCGGAAGATGAGGGCGA.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCCGAAGATCCTCGGAAGAT.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAAGATCCTCGGAAGATGA...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGGAAGATGAGGGCGACAACGAG......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCGACAACGAGTCAAACGTTACC..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACGAGT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TC-------------TG--------------------------------TGTGTGTG--------------CCGCGC-----------C----------------C-CAA.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGAAGATGAGGGCGACAACGAGT.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAACGTTACCGTAGACAGT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTTGTCTAATTCCCGAAGA.................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGTTACCGTAGACAGTG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAGTC....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTCCCGAAGATCCTC............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAACGTTACCGTAGACT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAAGATCCTCGGAAGATGAGGGCG..............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGA.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAAGATCCTCGGAAGATGAGGGCGA.............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGAAGATGAGGGCGACAACGAG......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCAAACGTTACCGT........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACGA.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTAATTCCCGAAGATC...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG--------------CCGCGC-----------C----------------C-CAAATATTA...............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGTCAAACGTTACCGTAG......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAAGATCCTCGGAAGATG....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATCCTCGGAAGATGAG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGAAGATCCTCGGAAGA......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCGACAACGAGTCA...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCTCGGAAGATG....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAG......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAACGAGTCAAACGT..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACGAG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCTCGGAAGATGA...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCAAACGTTACCGTAGA.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGTCAA..................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGATGAGGGCGACAACGAG......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCTCGGAAGATGAG..................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAGTCAAA.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGAAGATGAGGGCGACAACGAGT.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTCAAACGTTACCGTAGACAGT.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGTCAAACGTTA............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCAAACGTTACCGTAGACAGT.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACG........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGGAAGATGAGGGA...............................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAATTGTT---------TTAATAACTTG-CTGTTTT------T-TTTTTACGTTTTTATTTTCATAT-TTT------GT----CCACGCCACGCCAAAA-------A-------CC----CTACCCAT-AAATGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAA-CACC-TATT---ACA--------------------------TCACACCCCCAA----------------------------------AA---------------------------------------------------CCACTTACTTGTACATA----AATC-------------T----------------------------------GTATGGT--------------CCGCGC-----------A---------------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTAACCGTGGACAGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGT.....................1917.0071001500
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGT.....................2014.0040000310
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGAGT.....................2213.0030002100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGTCTAACGTAACCGTGGA.....2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGTCT...................2111.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGACAACGAGTCTAACGTAACCG.........2711.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACG........................1911.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGGGCGACAACGAGT.....................2111.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAAGATGAGGGCGACAACGAGT.....................2611.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGTCTAACGTAACCGT........2311.0010000100
droYak3
TAATTGTT---------TTAATAACTTG-CTGTTTGTTC---TTTTTTTGCGTT-TTATTTTCATAT-TTT------GA----CTACGCTACGCCAAAA-------A-------CC----ATACCTAT-AATTGCAATT--------------TGTGTTA-AT-AAACCAACC-GCTTTACA-------------C------------CAAA-CACC-TATC---GCA--------------------------TTACACCCCCAA---------------------------------------------------------------------------------------C----CACTTGTACATA----AATC-------------T----------------------------------GTGTGTG--------------CCGCGC-----------A---------------CC-AAAATATTACTCAGCTATTGTTTGTCTAATTTCCGAAGATCCTCGGAAGATGAGGGCGACAACGAGTCTAACGTAACCGTGGACAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGGCGACAACGAGTCTAACGTAACCGT........30121.0021000000000021
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGT.....................1913.00300000030000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGTCT...................2212.00202000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGATGAGGGCGAC............................1811.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGGGCGACAACGA.......................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGTAACCGTGGACAGC.2011.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGTC....................2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGAAGATGAGGGCGACAACGAGTC....................2811.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGATGAGGGCGACAACGAGT.....................2411.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCGACAACGAGTC....................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGATGAGGGCGACAACGA.......................2211.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTCGGAAGATGAGGGCGACAACGA.......................2811.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGACAACGAGTCTAACGT..............2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGTCTAACGTAACCGT........2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTAACCGTGGACAGC.1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGGGCGACAACGAGT.....................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTCGGAAGATGAGGGCGACAACGAGT.....................3011.00100000010000
droEug1
TAATTGCT---------TTAATAACTTT-ATGTTTG------TATTCTTGTGTTTTTACTTTCATAT-TTC------GAA---CCACGCCACGCCAAAA-------A------ACC----CTACCCAT-ATATGCAATT--------------TGTGTTATAT-AAAACAACC-GCTTTACA-------------C------------CAAA-CCCC-TGTC---ACA--------------------------TCACACCCACAA----------------------------------ACC------------------------------------------------ACC----TCCTTGTACATA----ATTC-------------T----------------------------------GTGTGTG--------------CCACGC-----------C---------------CA-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAATGTGACCGTGGACAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
TAATTGCC---------TTAATAACTTT-CTGTTTG------TATTCTTGTGTTTTTACTTTCATAT-TTC------GAA---CCACGCCCCGCCAAAC---------------CT----TCACCCAT-AAATGCAATT--------------TGTGTTA-TC-AA----ACC-GCTTTTCA-------------C------------CAAA-CTCC-AATC---ACA--------------------------TCAAACCCACAA----------------------------------ACT------------------------------------------------TGC----CTCTTGTACAAA----AACC-------------T----------------------------------GTGTGTG--------------CCTCGC-----------C---------------CC-CGAATATTACTCAGATATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAACATTACCGTGGACAGCGSizeHit CountTotal NormTotal
No Reads
droTak1
-ATTTGCC---------CTAATAACTTT-CTGTTTG------TATTCTTGTGTTTTTATTTTCATAT-TTC------GAT---CCACGCCACGCCAAAA-------C-------CC----CCACCCAT-AAATGCAATT--------------TGTGTTA-TC-AAACCAACC-GCTTTACA-------------C------------CAAA-CCCC-AATC---ACA--------------------------TCACACCCACAA----------------------------------AA-------------------------------------------------TCC----CTCTTGTACATA----AATC-------------T----------------------------------GTGTGTG--------------CCACGC-----------C---------------CC-CGAAAATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAACGTAACCGTGGACAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CAATTGCT---------TTAATAATATT-TTGTTTG------TATTCTTGTGTTTTTATTTTCATAT-CTC------AAA---CCACGCCACGCCAATA---------------CC----CTACCCAT-AAATGCAATT--------------TGTGTTT-TCAAAACCAACC-GCTTTTTA-------------CAC----------CAAA-CCTT-T--C---ACAAC------------------------TCACACCCACAA----------------------------------ACC-----------------------------------------------ACAC----CACTTGTACATATGTAAATC-------------T----------------------------------GTGTGTG--------------CCACGC-----------C-----C---------CC-CAAATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAGGACGAGGCCGACAACGAGTCCAATGTGACCGTGGACAGTGSizeHit CountTotal NormTotal
No Reads
droRho1
TAATTGCT---------TTAATAACTTT-CTGTTCG------TATTCTTGTATTTTTATTTTCATAT-TTC------GAA---CCACGCC-------------------------------TTACCAT-AAACGCAATT--------------TGTGTTA-TC-AAACCAACC-GCTTTACA-------------C------------CAAA-CCCC-TCAC---ACA--------------------------TCACACCCACAA----------------------------------ATC----------------------------------------------AACCC----CACTTGTACATA----AATC-------------T----------------------------------GTGTGTG--------------CCACGT-----------C----------------C-CAAATATTACTCAGCTATTGTTTATCTAATTCCCGAAGATCCTCGGAGGACGAGGCCGACAACGAGTCCAACATAACTGTGGACAGCGSizeHit CountTotal NormTotal
No Reads
droFic1
TAATTGCT---------TTAATAACTTT-CTGTTTG------TATTCTTGTGTTTTTATTTTCATAT-CTT------GAA---CCACGCCACGCCAAAA---------------CC----CCAACCAT-TTTTGCAATT--------------TGTGTTA-TCAAAAACAACC-GCTTTACA-------------C------------CAAA-CCCC-AAAC---ACA--------------------------TCACGCCCACAC----------------------------------AACCGCAAAA------------------------------------CCAAAAAC---CCACTTGTACATA----ATTC-------------T----------------------------------GTCTGTG--------------CCACGC-----------C---------------CC-CAAATATTACTCAGCTATTGTTTGTCTACTTCCCGAAGATCCTCGGAAGACGAGGCCGACAACGAGTCCAACGTGACCGTGGACAGCGSizeHit CountTotal NormTotal
No Reads
droKik1
TTATTGCCTTAA----GTTAATAACTTTTATGTTTG------TATTCTTGTGTTTTTATTTTCATAT-TTC------GAA---CCACGCCACGCCAAAC---------------CC----CTTACCAT-AAACGCA-----------------------------AACCAAAC-GCTTTACA-------------CAC----------CAAA-ACCC-TCCCTTTACA--------------------------TTACACCCACAA----------------------------------CA-----------------------------------------------AAACC----CACTTGTACATA----AATCT--A-TGTGTCTATG--------------------------------TGTGTGTG--------------CCACGC-----------C---------------AA-CAAATATTACTCAGCTATTATTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCGGATAACGAGTCGAACATAACGGTGGATAGCGSizeHit CountTotal NormTotal
No Reads
droAna3
TATTTGCG---------TTAATAATTT---TGTTTG------TATTTTTGTGTTTTTATTTTCATAT-TTC------GAA---CCACGCCACGCCAAAA-------A-------CC----CTTACCAT-AACTGCAATC--------------TGTGT-A-TA-AAACCAACC-GCTTTATCCAAAACAAATAAACAC----------CAAA-CCCA----------A--------------------------TCACACCCACAA----------------------------------AC--GCAAAAATTACTCATCACCTCCACAAACAAAACCAAACCAATCCAAAAAC----CACTTGTACATA----AT---------------TG--------------------------------TGTTCGTG--------------ACACAC-----------C----------------C-CGTATGTTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATCACCGTGGACAGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................AATAATTT---TGTTTG------TATTTTTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTCCCGAAGATCATCGGAA........................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACGAGGCCGACAACGA.......................1911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGACGAGGCCGACAACGA.......................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGCCGACAACGAGTCCAAC................2411.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGGAAGACGAGGC................................1911.001010000
droBip1
TATTTACG---------TTAATAATTT---TGTTTG------TATTTTTGTGTTTTTATTTTCATAT-TTC------GAA---CCACGCCACGCCAAAC-------A-------CC----CTTACCAT-AACTGCAATC--------------TGTGTTATATAAAACCAACC-GCTTTATCCGAAACAAATAAACAC----------CAAA-CCCA-T-----------------------------------TCACACCCACAA----------------------------------AC--ACAAAAACTACTCATCCCCCCCACAAA---------------CCAAAAAC----CACTTGTACATA----AT---------------TG--------------------------------TGTTCGTG--------------ACACAC-----------C------------------CGAATGTTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGGCGACAACGAGTCCAACATCACCGTGGACAGCGSizeHit CountTotal NormTotal
No Reads
dp5
TTGTTGCTTTATGCTTGTTAATAACTTT-CTGTTTG------TATTTTTGTGTTTTTATTTTCATATATTC------GAC---CCACGCCACGCCTTAA-------A--------A----CTAATCAT-AAACGCAATT--------------TCTGTTA-TC-AAACCAAAT-GCTTTACA-------------C------------AACAAA-CGAAAA----ACAACCG----CACACCA------------CACACCCA-----------------------------------------------------------------------------------------------CATTTGCACACACGAAAACACCAACCACATATCT----------------------------------GTGTGTG--------------CCCTGC-----------A---------------CG-AACATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATCACTGTGGATAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTCCAACATCACTGTGGATAGC.2711.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTCCAACATCACTGTGG......2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAGGCCGACAACGAGTCCAAC................2511.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTCCAACATCACTGTGGA.....2311.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGACGAGGCCGAC............................1811.0010100000000
droPer2
CTGTTGCTTTATGCTTGTTAATAACTTT-CTGTTTG------TATTTTTGTGTTTTTATTTTCATATATTC------GAC---CCACGCCACGCCTTAA-------A--------A----CTAATCAT-AAACGCAATT--------------TCTGTTA-TC-AAACCAAAT-GCTTTACA-------------C------------AACAAA-CGATAA----ACAACCG----CACACCGCCCACCACACACCACACCCA-----------------------------------------------------------------------------------------------CATTTGCACACACGAAAACACCAACCACATATCT----------------------------------GTGTGTG--------------CCCTGC-----------A---------------CG-AACATATTACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATCACTGTGGATAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCATCGGAAGACGA...................................1913.003300000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAAGATCATCGGAAGACG....................................2112.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCATCGGAAGACGAGGC................................2011.001001000
droWil2
TAATTGTT--------ATTAATAATTAT-CTGTTTGTTTTTCT-CATTTTTGTTTTTATTTTCATAT-GTGTTTATTGAAAAAC--TTCAACGACCAAATCCGAAAACTAAAATATTGTCAATCCCATCATATGCAATTTGGCTATATCCATATGTGTTACTT-AC----AAT-GCTTCACA-------------C------------AATCCA-C---AAC---A------------------------------------CC-AATCCACCTAAATGTTCCTACCTTGTATATTTCAAACT-----------------------------------------------C-------CA-----TCATCCGCAAATCCGCATCGCAAATCTT----TCTGTGCATTTTTGTTGTTCCCTTGTGT-TTATGTG-----------------------------------------------------AAATTACTCAGCTATTATTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGGCGACAATGAATCAAACATAACCGTCGACAGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATCAAACATAACCGTCGACA...2411.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACATAACCGTCGACAGC.2011.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAGGGCGACAATGA.......................1811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCATCGGAAGACGAGGGC...............................2111.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAATCAAACATAACCGTCGACAGC.2711.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGTTGTTCCCTTGT....................................................................................................................................................1911.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGGAAGACGAGGGC...............................2011.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTTGTGT-TTATGTG-----------------------------------------------------A....................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAACATAACCGTCGACAGC.2411.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCAGCTATTATTTGTCT.............................................................2111.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATAACCGTCGACAGC.1811.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATAACCGTCGACAGC.1911.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTCTAATTCCCGAAG..................................................1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGTTGTTCCCTTGTGT-.................................................................................................................................................2111.00100100
droVir3
--ATTGCT--------GTTAATAATTTG-TTATTCTACA---TTTTTTTGTGCTTTTATTTTCATAT-TTT------AAA---C--CGCAACGTTC----CCTCAAT---AAACAC----ATAACCAT-ACTTGCCATT--------------TGTGC------------------CTTACA-------------AA-----------CACA-CACC-T--------C--------------------------TCACACCCACAA----------------------------------AC-------------------------------------------------------------GCACACACGTGAACC-------TGCA--TCTGTTA------------------------------CTGTA--AATTCCCACACACTG--CAC---------A---------------CTCCAA---ATACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACATTACCATAGACAGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................C------------------CTTACA-------------AA-----------CACA-CACC-T--------C--------------------------TC...........................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGCCGACAACGAGTCC...................2011.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGACGAGGCCGACAACGAGTCC...................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTAATTCCCGAAGATCATCGGA.........................................2611.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAATTCCCGAAGATCATCGGA.........................................2411.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCATCGGAAGACGAGGCCGACAACGAGT.....................3111.001000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAGGCCGACAACGAGTC....................2111.001000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTGTCTAATTCCCGAAGAT................................................2411.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCGGAAGACGAGGCCGACAAC.........................2411.001000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGCCGACAACGAGTC....................2011.001000000000000000100000000000000000000000000000000000000000000000
..........................................TTTTTTTGTGCTTTTATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000010000000000000000000000000000000000000
droMoj3
TA----TT---------TTAATAATTTG-TTGTACAACCTTCT-TTTTTGTGTTTTTATTTTCATAT-TTG------TA----AACTGCAACGTTT----CCTCAAAATAAAATAC----ATACCCAT-A----TCATT--------------TGTGCTTCGT-AAACAAACACG---AACA-------------CCAACATCAACACCAAA-ACCA-AAAC---ACACCTGAACACACAACA------------CACACACA-----------------------------------------------------------------------------------------------CACCTGCACACGCGC--------A-CGCGTATTTG--TAACTGTACCCGTCACCTGTTACC---TGT-TAATGCACCAAT-----------ACG-----------------------------C-CA---AATACTCAGCTATTATTTGTCTAATTCCCGAAGATCATCGGATGACGAGGCCGACAACGAGTCCAACCTAACGGTCGACAGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACGAGTCCAACCTAACGGTC.......2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTAATTCCCGAAGATCATCGGA.........................................2611.001000001
droGri2
T-------------------------------------------TCTTTGTGTTTTTACTTTCATAT-CTC------AAA---C--TGCAACGTCAAAA----------------------------C-ATATGCAATA--------------TATGTTA-TT-TC-----AC-GCTTTACA-------------C------------ACAC----------------------------------------------ACACACAAACACAC----------------------------G-C----------------------------------------------ACACA----CACTTGTA---------ATT-------------TG--TAA------------------------------CTGTA--AATACGCACAAACTG--TACACACTCTGCACCCCTCCCCAACCAACC----AAAATACTCAGCTATTGTTTGTCTAATTCCCGAAGATCATCGGAAGACGAGGCCGACAACGAGTCCAACTTGACGATCGATAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGACAACGAGTCCAA.................1911.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGACGAGGCCGACA...........................1811.00110

Generated: 05/19/2015 at 02:46 PM